Wall clock time and date at job start Mon Mar 30 2020 06:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99904 * 2 1 4 4 H 1.08998 * 109.47379 * 359.97438 * 3 2 1 5 5 C 1.53003 * 109.47139 * 239.99389 * 3 2 1 6 6 O 1.42901 * 109.47469 * 120.00107 * 3 2 1 7 7 N 1.46300 * 114.00327 * 205.00012 * 6 3 2 8 8 C 1.46896 * 111.00323 * 179.97438 * 7 6 3 9 9 C 1.50698 * 109.47287 * 179.97438 * 8 7 6 10 10 C 1.38116 * 120.03826 * 260.00365 * 9 8 7 11 11 C 1.38274 * 120.07124 * 179.97438 * 10 9 8 12 12 C 1.38327 * 120.14202 * 0.03759 * 11 10 9 13 13 C 1.38087 * 120.06474 * 0.02562 * 12 11 10 14 14 C 1.38861 * 120.03155 * 79.72575 * 9 8 7 15 15 O 1.35751 * 120.07172 * 359.97438 * 14 9 8 16 16 C 1.34833 * 117.00045 * 174.12915 * 15 14 9 17 17 H 1.07998 * 120.00009 * 5.06772 * 16 15 14 18 18 C 1.38653 * 119.99672 * 185.06230 * 16 15 14 19 19 N 1.31557 * 120.00272 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00054 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46780 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47132 * 119.99887 * 20 18 16 23 23 H 1.48501 * 109.47570 * 240.00456 * 20 18 16 24 24 H 1.08005 * 119.99922 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.00526 * 179.72798 * 1 2 3 26 26 H 1.07995 * 119.99931 * 179.97438 * 2 1 3 27 27 H 1.09010 * 109.46729 * 60.00164 * 5 3 2 28 28 H 1.08997 * 109.47114 * 179.97438 * 5 3 2 29 29 H 1.08998 * 109.47301 * 300.00435 * 5 3 2 30 30 H 1.00905 * 110.99727 * 303.95380 * 7 6 3 31 31 H 1.09006 * 109.47039 * 299.99899 * 8 7 6 32 32 H 1.08995 * 109.46776 * 59.99644 * 8 7 6 33 33 H 1.07996 * 119.96609 * 359.96880 * 10 9 8 34 34 H 1.08001 * 119.93217 * 180.02562 * 11 10 9 35 35 H 1.07997 * 119.97332 * 179.97438 * 12 11 10 36 36 H 1.07993 * 120.03116 * 180.02562 * 13 12 11 37 37 H 0.97000 * 120.00213 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9432 1.3861 -1.2492 6 8 2.8850 1.3809 1.1667 7 7 3.1997 2.7469 1.5854 8 6 4.0442 2.7480 2.7873 9 6 4.3472 4.1690 3.1871 10 6 5.5615 4.7369 2.8543 11 6 5.8400 6.0408 3.2204 12 6 4.9046 6.7805 3.9214 13 6 3.6893 6.2180 4.2582 14 6 3.4037 4.9107 3.8855 15 8 2.2069 4.3574 4.2087 16 6 1.3861 5.0876 4.9904 17 1 1.6563 6.0972 5.2625 18 6 0.1951 4.5423 5.4449 19 7 -0.1339 3.3123 5.1138 20 14 -0.9418 5.5535 6.5285 21 1 -0.3466 6.8952 6.7541 22 1 -2.2593 5.7032 5.8599 23 1 -1.1236 4.8665 7.8324 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5401 -0.9352 -0.0044 26 1 1.8499 -0.9353 0.0004 27 1 2.3165 1.3283 -2.1393 28 1 3.4878 2.3302 -1.2494 29 1 3.6515 0.5576 -1.2491 30 1 3.6358 3.2633 0.8361 31 1 3.5199 2.2454 3.6002 32 1 4.9762 2.2234 2.5769 33 1 6.2942 4.1618 2.3077 34 1 6.7901 6.4828 2.9586 35 1 5.1252 7.7985 4.2062 36 1 2.9592 6.7960 4.8051 37 1 -0.9673 2.9309 5.4314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400942104.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:20 Heat of formation + Delta-G solvation = 19.302567 kcal Electronic energy + Delta-G solvation = -19437.330856 eV Core-core repulsion = 16376.087156 eV Total energy + Delta-G solvation = -3061.243701 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.14693 -37.35566 -36.39515 -34.34424 -32.51372 -32.16040 -29.81970 -29.13685 -28.44631 -25.34499 -24.15728 -22.67054 -21.55383 -20.52321 -19.63032 -17.92623 -17.24515 -16.59442 -15.37860 -14.99594 -14.81264 -14.47555 -14.18814 -14.05782 -13.73598 -13.45911 -13.19351 -13.00263 -12.59673 -12.37278 -12.07304 -11.81584 -11.63821 -11.45992 -11.27202 -10.88608 -10.72119 -10.68443 -10.41792 -10.36912 -10.08541 -9.36167 -9.29826 -8.81649 -8.23825 -7.97373 -7.21410 -6.39916 -3.98977 2.00342 2.31610 2.38694 3.14541 3.15774 3.21037 3.39560 3.98874 4.57237 4.97026 5.12683 5.17446 5.25976 5.31060 5.42226 5.51766 5.57745 5.60190 5.74636 5.88248 5.89052 5.94579 6.09614 6.19488 6.23794 6.30879 6.50350 6.68055 6.70579 6.86772 6.89368 7.05206 7.16263 7.23361 7.36595 7.45849 7.80285 7.82300 8.02160 9.03858 9.74448 10.76208 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.007127 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.525005 B = 3927.884075 C = 5949.344753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.146 4.146 3 C 0.111 3.889 4 H 0.076 0.924 5 C -0.174 4.174 6 O -0.248 6.248 7 N -0.485 5.485 8 C 0.117 3.883 9 C -0.172 4.172 10 C -0.064 4.064 11 C -0.222 4.222 12 C -0.067 4.067 13 C -0.238 4.238 14 C 0.175 3.825 15 O -0.155 6.155 16 C -0.395 4.395 17 H 0.091 0.909 18 C 0.042 3.958 19 N -0.849 5.849 20 Si 0.938 3.062 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.322 0.678 31 H 0.094 0.906 32 H 0.034 0.966 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.175 -1.101 -8.179 9.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.052 3.948 4 H 0.094 0.906 5 C -0.231 4.231 6 O -0.255 6.255 7 N -0.155 5.155 8 C -0.011 4.011 9 C -0.175 4.175 10 C -0.083 4.083 11 C -0.241 4.241 12 C -0.086 4.086 13 C -0.257 4.257 14 C 0.119 3.881 15 O -0.056 6.056 16 C -0.472 4.472 17 H 0.108 0.892 18 C -0.163 4.163 19 N -0.483 5.483 20 Si 0.763 3.237 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.128 0.872 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.137 0.863 31 H 0.112 0.888 32 H 0.052 0.948 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.145 0.855 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.323 -1.627 -7.724 9.000 hybrid contribution 0.329 0.533 0.044 0.629 sum 4.653 -1.093 -7.679 9.045 Atomic orbital electron populations 1.23911 0.95722 1.02174 0.98911 1.22666 0.95618 0.97439 1.00843 1.21019 0.92366 0.96168 0.85214 0.90561 1.22331 1.00545 1.02025 0.98220 1.90778 1.70517 1.18623 1.45602 1.67006 1.48546 0.95163 1.04803 1.20616 0.94223 0.93866 0.92385 1.18572 0.94727 0.95388 1.08790 1.20565 0.95002 0.94852 0.97918 1.20513 1.00200 0.95473 1.07872 1.20786 0.93278 0.98303 0.96196 1.21190 0.99091 0.96484 1.08955 1.19115 0.86237 0.90931 0.91856 1.84060 1.20762 1.42285 1.58487 1.21387 1.00201 0.97716 1.27860 0.89151 1.25270 0.97097 0.96287 0.97655 1.70084 1.23131 1.13228 1.41872 0.85702 0.79649 0.79201 0.79188 1.19155 1.20183 1.20180 0.88143 0.88142 0.87239 0.91741 0.92544 0.92257 0.86297 0.88794 0.94796 0.87315 0.87666 0.87525 0.85463 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 14.32 29.02 0.42 -1.84 16 2 C -0.15 -2.09 9.15 -36.03 -0.33 -2.42 16 3 C 0.11 1.75 3.32 -27.88 -0.09 1.66 16 4 H 0.08 1.29 7.74 -51.93 -0.40 0.89 16 5 C -0.17 -2.15 9.51 37.16 0.35 -1.80 16 6 O -0.25 -4.79 10.91 -13.92 -0.15 -4.94 16 7 N -0.48 -9.66 7.29 -11.41 -0.08 -9.74 16 8 C 0.12 2.38 6.01 -4.98 -0.03 2.35 16 9 C -0.17 -3.59 5.41 -104.44 -0.56 -4.16 16 10 C -0.06 -1.14 9.66 -39.61 -0.38 -1.53 16 11 C -0.22 -3.80 10.04 -39.54 -0.40 -4.20 16 12 C -0.07 -1.23 10.04 -39.60 -0.40 -1.63 16 13 C -0.24 -5.16 9.17 -39.39 -0.36 -5.52 16 14 C 0.17 4.18 6.62 -39.10 -0.26 3.92 16 15 O -0.15 -4.35 9.00 0.04 0.00 -4.34 16 16 C -0.40 -10.98 9.49 30.89 0.29 -10.69 16 17 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 18 C 0.04 1.16 5.49 -17.52 -0.10 1.07 16 19 N -0.85 -24.91 13.67 55.48 0.76 -24.16 16 20 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H 0.10 1.37 7.83 -52.48 -0.41 0.96 16 25 H 0.10 1.11 8.06 -52.49 -0.42 0.69 16 26 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 27 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 28 H 0.06 0.68 7.73 -51.93 -0.40 0.28 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.32 5.61 8.46 -39.29 -0.33 5.27 16 31 H 0.09 2.21 7.87 -51.93 -0.41 1.80 16 32 H 0.03 0.60 8.00 -51.93 -0.42 0.19 16 33 H 0.11 1.61 8.04 -52.49 -0.42 1.19 16 34 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 37 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 323.32 15.07 4.87 4.87 Total: -1.00 -30.81 323.32 -6.51 -37.32 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -5.03 Total: 10.24 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -1.85 Total: -24.77 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.68 Total: -33.90 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.15 Total: -9.28 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.81 -6.51 -37.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400942104.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.625 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds