Wall clock time and date at job start Mon Mar 30 2020 06:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99904 * 2 1 4 4 H 1.08998 * 109.47379 * 359.97438 * 3 2 1 5 5 C 1.53003 * 109.47139 * 239.99389 * 3 2 1 6 6 O 1.42901 * 109.47469 * 120.00107 * 3 2 1 7 7 N 1.46300 * 114.00327 * 205.00012 * 6 3 2 8 8 C 1.46896 * 111.00323 * 179.97438 * 7 6 3 9 9 C 1.50698 * 109.47287 * 179.97438 * 8 7 6 10 10 C 1.38116 * 120.03826 * 260.00365 * 9 8 7 11 11 C 1.38274 * 120.07124 * 179.97438 * 10 9 8 12 12 C 1.38327 * 120.14202 * 0.03759 * 11 10 9 13 13 C 1.38087 * 120.06474 * 0.02562 * 12 11 10 14 14 C 1.38861 * 120.03155 * 79.72575 * 9 8 7 15 15 O 1.35751 * 120.07172 * 359.97438 * 14 9 8 16 16 C 1.34833 * 117.00045 * 174.12915 * 15 14 9 17 17 H 1.07998 * 120.00009 * 5.06772 * 16 15 14 18 18 C 1.38653 * 119.99672 * 185.06230 * 16 15 14 19 19 N 1.31557 * 120.00272 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00054 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46780 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47132 * 119.99887 * 20 18 16 23 23 H 1.48501 * 109.47570 * 240.00456 * 20 18 16 24 24 H 1.08005 * 119.99922 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.00526 * 179.72798 * 1 2 3 26 26 H 1.07995 * 119.99931 * 179.97438 * 2 1 3 27 27 H 1.09010 * 109.46729 * 60.00164 * 5 3 2 28 28 H 1.08997 * 109.47114 * 179.97438 * 5 3 2 29 29 H 1.08998 * 109.47301 * 300.00435 * 5 3 2 30 30 H 1.00905 * 110.99727 * 303.95380 * 7 6 3 31 31 H 1.09006 * 109.47039 * 299.99899 * 8 7 6 32 32 H 1.08995 * 109.46776 * 59.99644 * 8 7 6 33 33 H 1.07996 * 119.96609 * 359.96880 * 10 9 8 34 34 H 1.08001 * 119.93217 * 180.02562 * 11 10 9 35 35 H 1.07997 * 119.97332 * 179.97438 * 12 11 10 36 36 H 1.07993 * 120.03116 * 180.02562 * 13 12 11 37 37 H 0.97000 * 120.00213 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3552 2.1336 -0.0005 5 6 2.9432 1.3861 -1.2492 6 8 2.8850 1.3809 1.1667 7 7 3.1997 2.7469 1.5854 8 6 4.0442 2.7480 2.7873 9 6 4.3472 4.1690 3.1871 10 6 5.5615 4.7369 2.8543 11 6 5.8400 6.0408 3.2204 12 6 4.9046 6.7805 3.9214 13 6 3.6893 6.2180 4.2582 14 6 3.4037 4.9107 3.8855 15 8 2.2069 4.3574 4.2087 16 6 1.3861 5.0876 4.9904 17 1 1.6563 6.0972 5.2625 18 6 0.1951 4.5423 5.4449 19 7 -0.1339 3.3123 5.1138 20 14 -0.9418 5.5535 6.5285 21 1 -0.3466 6.8952 6.7541 22 1 -2.2593 5.7032 5.8599 23 1 -1.1236 4.8665 7.8324 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5401 -0.9352 -0.0044 26 1 1.8499 -0.9353 0.0004 27 1 2.3165 1.3283 -2.1393 28 1 3.4878 2.3302 -1.2494 29 1 3.6515 0.5576 -1.2491 30 1 3.6358 3.2633 0.8361 31 1 3.5199 2.2454 3.6002 32 1 4.9762 2.2234 2.5769 33 1 6.2942 4.1618 2.3077 34 1 6.7901 6.4828 2.9586 35 1 5.1252 7.7985 4.2062 36 1 2.9592 6.7960 4.8051 37 1 -0.9673 2.9309 5.4314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400942104.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:19 Heat of formation + Delta-G solvation = -0.287788 kcal Electronic energy + Delta-G solvation = -19438.180358 eV Core-core repulsion = 16376.087156 eV Total energy + Delta-G solvation = -3062.093202 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84442 -38.73167 -38.10397 -35.73955 -34.26623 -33.80257 -31.13674 -30.57975 -29.98028 -27.32532 -25.71063 -23.86273 -23.23976 -22.10184 -20.81376 -19.76369 -18.85383 -18.23532 -16.80284 -16.59367 -16.44561 -16.01700 -15.62014 -15.49639 -15.41960 -15.03441 -14.56073 -14.40556 -14.16491 -13.82369 -13.54886 -13.33453 -13.13513 -12.97530 -12.61050 -12.51422 -12.34142 -12.15994 -12.06137 -11.68974 -11.42711 -11.10513 -10.77478 -10.47851 -9.77633 -9.49196 -8.93240 -8.40360 -6.08170 0.46485 0.78722 1.14190 1.35507 1.44110 1.53183 2.00293 2.19557 2.88629 3.23089 3.56361 3.81544 3.87035 4.04198 4.09098 4.16246 4.31753 4.36200 4.38407 4.48254 4.60312 4.67788 4.80060 4.82183 4.92281 5.02795 5.11108 5.18258 5.18614 5.31339 5.58606 5.59940 5.67693 5.76298 5.78652 5.84594 6.07052 6.26536 6.40726 7.02957 7.86389 8.81193 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.007127 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.525005 B = 3927.884075 C = 5949.344753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.162 4.162 3 C 0.101 3.899 4 H 0.055 0.945 5 C -0.163 4.163 6 O -0.266 6.266 7 N -0.502 5.502 8 C 0.126 3.874 9 C -0.179 4.179 10 C -0.059 4.059 11 C -0.195 4.195 12 C -0.065 4.065 13 C -0.254 4.254 14 C 0.135 3.865 15 O -0.207 6.207 16 C -0.415 4.415 17 H 0.099 0.901 18 C -0.020 4.020 19 N -0.910 5.910 20 Si 1.014 2.986 21 H -0.252 1.252 22 H -0.270 1.270 23 H -0.270 1.270 24 H 0.090 0.910 25 H 0.126 0.874 26 H 0.125 0.875 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.336 0.664 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.144 0.856 36 H 0.116 0.884 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.543 0.289 -9.212 11.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.182 4.182 3 C 0.043 3.957 4 H 0.073 0.927 5 C -0.220 4.220 6 O -0.274 6.274 7 N -0.174 5.174 8 C -0.002 4.002 9 C -0.181 4.181 10 C -0.078 4.078 11 C -0.214 4.214 12 C -0.083 4.083 13 C -0.274 4.274 14 C 0.083 3.917 15 O -0.112 6.112 16 C -0.491 4.491 17 H 0.116 0.884 18 C -0.218 4.218 19 N -0.548 5.548 20 Si 0.834 3.166 21 H -0.175 1.175 22 H -0.196 1.196 23 H -0.195 1.195 24 H 0.108 0.892 25 H 0.144 0.856 26 H 0.143 0.857 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.152 0.848 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.161 0.839 36 H 0.134 0.866 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.753 -0.197 -8.785 11.082 hybrid contribution -0.098 0.164 0.208 0.282 sum 6.655 -0.033 -8.577 10.856 Atomic orbital electron populations 1.24122 0.95634 1.02972 0.97582 1.22789 0.96010 0.97320 1.02039 1.21287 0.92499 0.96321 0.85584 0.92721 1.22233 1.00343 1.02476 0.96970 1.90740 1.71237 1.18000 1.47444 1.66833 1.49101 0.96139 1.05326 1.20412 0.94742 0.93788 0.91297 1.18888 0.95454 0.95417 1.08317 1.21030 0.94016 0.95611 0.97097 1.21125 1.01157 0.94669 1.04423 1.21220 0.91752 1.00071 0.95287 1.21321 1.00701 0.95782 1.09564 1.19748 0.86177 0.92481 0.93316 1.84043 1.22792 1.43651 1.60745 1.21843 1.00828 0.98256 1.28168 0.88380 1.26502 0.98652 0.97532 0.99126 1.70243 1.24147 1.15638 1.44751 0.84598 0.77116 0.77942 0.76968 1.17507 1.19553 1.19514 0.89158 0.85574 0.85681 0.89808 0.92324 0.91401 0.84751 0.93399 0.91898 0.83310 0.83001 0.83853 0.86590 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 14.32 67.78 0.97 -3.45 16 2 C -0.16 -4.63 9.15 25.65 0.23 -4.39 16 3 C 0.10 3.25 3.32 29.85 0.10 3.35 16 4 H 0.05 1.95 7.74 -2.39 -0.02 1.93 16 5 C -0.16 -3.85 9.51 71.98 0.68 -3.16 16 6 O -0.27 -10.55 10.91 -50.16 -0.55 -11.10 16 7 N -0.50 -20.59 7.29 -190.02 -1.38 -21.98 16 8 C 0.13 5.24 6.01 85.56 0.51 5.75 16 9 C -0.18 -7.38 5.41 -19.74 -0.11 -7.49 16 10 C -0.06 -1.87 9.66 22.25 0.22 -1.65 16 11 C -0.20 -5.67 10.04 22.30 0.22 -5.44 16 12 C -0.07 -2.15 10.04 22.26 0.22 -1.93 16 13 C -0.25 -11.00 9.17 22.39 0.21 -10.79 16 14 C 0.14 6.67 6.62 22.58 0.15 6.82 16 15 O -0.21 -12.45 9.00 -22.78 -0.21 -12.66 16 16 C -0.41 -24.36 9.49 67.92 0.64 -23.72 16 17 H 0.10 5.32 5.20 -2.91 -0.02 5.30 16 18 C -0.02 -1.14 5.49 84.83 0.47 -0.68 16 19 N -0.91 -56.95 13.67 21.61 0.30 -56.65 16 20 Si 1.01 43.71 29.55 68.60 2.03 45.74 16 21 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H 0.09 2.56 7.83 -2.91 -0.02 2.53 16 25 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 26 H 0.13 3.14 8.06 -2.91 -0.02 3.11 16 27 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.06 1.34 7.73 -2.39 -0.02 1.32 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.34 11.69 8.46 -89.69 -0.76 10.93 16 31 H 0.05 2.41 7.87 -2.38 -0.02 2.40 16 32 H 0.06 2.18 8.00 -2.39 -0.02 2.16 16 33 H 0.15 3.56 8.04 -2.91 -0.02 3.54 16 34 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 35 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 36 H 0.12 5.16 5.64 -2.91 -0.02 5.15 16 37 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -73.16 323.32 5.02 -68.14 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: 0.31 Total: 35.30 kcal Atomic # 6 Polarization: -51.32 SS G_CDS: 4.52 Total: -46.80 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -1.09 Total: -78.63 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.75 Total: -23.76 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -73.16 5.02 -68.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400942104.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.855 kcal (2) G-P(sol) polarization free energy of solvation -73.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds