Wall clock time and date at job start Mon Mar 30 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50694 * 109.47443 * 2 1 4 4 C 1.35135 * 125.62052 * 89.99491 * 3 2 1 5 5 C 1.40360 * 107.11587 * 180.02562 * 4 3 2 6 6 C 1.36547 * 106.71058 * 0.02562 * 5 4 3 7 7 C 1.46654 * 125.98766 * 179.97438 * 6 5 4 8 8 O 1.21695 * 119.99859 * 354.64155 * 7 6 5 9 9 N 1.34773 * 119.99888 * 174.63871 * 7 6 5 10 10 C 1.46500 * 120.00221 * 185.57279 * 9 7 6 11 11 C 1.52992 * 109.47730 * 185.19633 * 10 9 7 12 12 C 1.50706 * 115.54736 * 57.83477 * 11 10 9 13 13 H 1.07999 * 120.00193 * 264.63811 * 12 11 10 14 14 C 1.37883 * 119.99589 * 84.64497 * 12 11 10 15 15 N 1.31506 * 120.00091 * 1.96709 * 14 12 11 16 16 Si 1.86807 * 119.99698 * 181.96801 * 14 12 11 17 17 H 1.48502 * 109.47054 * 59.99863 * 16 14 12 18 18 H 1.48498 * 109.46604 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46982 * 299.99963 * 16 14 12 20 20 C 1.53001 * 117.50060 * 272.17453 * 11 10 9 21 21 C 1.52993 * 117.50636 * 203.51011 * 11 10 9 22 22 O 1.33934 * 125.61476 * 270.31200 * 3 2 1 23 23 H 1.09002 * 109.47306 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47495 * 300.00188 * 1 2 3 25 25 H 1.08999 * 109.47314 * 60.00301 * 1 2 3 26 26 H 1.08997 * 109.46932 * 239.99415 * 2 1 3 27 27 H 1.09006 * 109.47040 * 119.99978 * 2 1 3 28 28 H 1.07997 * 126.43823 * 0.03187 * 4 3 2 29 29 H 1.08004 * 126.64091 * 179.97438 * 5 4 3 30 30 H 0.97004 * 120.00172 * 5.56588 * 9 7 6 31 31 H 1.09006 * 109.46806 * 305.19400 * 10 9 7 32 32 H 1.09002 * 109.47380 * 65.19326 * 10 9 7 33 33 H 0.97005 * 120.00090 * 185.01437 * 15 14 12 34 34 H 1.08996 * 117.49555 * 359.97438 * 20 11 10 35 35 H 1.09002 * 117.50083 * 145.01659 * 20 11 10 36 36 H 1.09000 * 117.50308 * 214.98217 * 21 11 10 37 37 H 1.09004 * 117.49408 * 359.97208 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2946 2.1628 1.0985 5 6 2.7379 3.4179 0.6530 6 6 2.7228 3.3778 -0.7118 7 6 3.1080 4.4710 -1.6103 8 8 3.3894 5.5634 -1.1536 9 7 3.1504 4.2658 -2.9416 10 6 3.6515 5.3180 -3.8294 11 6 3.4735 4.8843 -5.2857 12 6 2.0611 4.5596 -5.6991 13 1 1.7143 3.5370 -5.6797 14 6 1.2118 5.5681 -6.1024 15 7 1.6456 6.8081 -6.1632 16 14 -0.5552 5.1730 -6.5623 17 1 -1.2464 4.5666 -5.3962 18 1 -1.2544 6.4217 -6.9585 19 1 -0.5690 4.2167 -7.6983 20 6 4.6010 4.0699 -5.9231 21 6 4.3851 5.5292 -6.3315 22 8 2.2868 2.1580 -1.0888 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8932 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.1841 1.8490 2.1260 29 1 3.0328 4.2536 1.2703 30 1 2.8492 3.4214 -3.3121 31 1 3.0937 6.2379 -3.6535 32 1 4.7088 5.4902 -3.6282 33 1 1.0304 7.5273 -6.3762 34 1 5.4698 3.8435 -5.3050 35 1 4.3213 3.2996 -6.6419 36 1 3.9635 5.7185 -7.3186 37 1 5.1115 6.2630 -5.9820 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404071401.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:10 Heat of formation + Delta-G solvation = -12.022705 kcal Electronic energy + Delta-G solvation = -19488.804650 eV Core-core repulsion = 16426.202584 eV Total energy + Delta-G solvation = -3062.602066 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.57241 -38.87898 -36.69356 -34.37323 -33.43522 -32.69017 -31.97682 -29.11549 -26.45164 -25.33541 -23.95738 -21.87631 -21.25810 -21.00736 -19.80227 -19.43001 -17.82002 -16.32145 -16.13894 -15.60855 -15.07542 -14.70969 -14.51152 -14.30450 -14.02219 -13.37330 -13.19049 -12.88911 -12.80909 -12.64080 -12.50332 -11.90108 -11.75816 -11.59192 -11.23907 -10.97258 -10.94291 -10.56098 -10.27012 -9.92328 -9.87865 -9.48599 -9.08202 -8.56712 -8.46650 -8.28977 -8.05116 -6.08790 -4.18032 1.27862 2.42940 2.77712 3.27334 3.33066 3.34553 3.62722 3.79104 4.35665 4.54443 4.84409 4.97244 5.02799 5.17421 5.22020 5.26342 5.37687 5.56972 5.63398 5.77579 5.91772 5.93947 6.00258 6.07691 6.29884 6.44657 6.46025 6.48378 6.68650 6.80816 6.98591 7.09219 7.20646 7.36849 7.50311 7.80131 8.18819 8.31503 8.68741 8.83138 9.49493 10.99377 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017682 B = 0.005656 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.172308 B = 4948.937773 C = 5667.638326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.045 4.045 3 C 0.010 3.990 4 C -0.221 4.221 5 C -0.133 4.133 6 C -0.061 4.061 7 C 0.589 3.411 8 O -0.536 6.536 9 N -0.686 5.686 10 C 0.160 3.840 11 C 0.023 3.977 12 C -0.500 4.500 13 H 0.059 0.941 14 C 0.075 3.925 15 N -0.874 5.874 16 Si 0.889 3.111 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.212 4.212 21 C -0.142 4.142 22 O -0.157 6.157 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.152 0.848 29 H 0.158 0.842 30 H 0.406 0.594 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.262 0.738 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.419 -11.886 11.104 16.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.083 4.083 3 C -0.042 4.042 4 C -0.240 4.240 5 C -0.154 4.154 6 C -0.113 4.113 7 C 0.373 3.627 8 O -0.417 6.417 9 N -0.333 5.333 10 C 0.038 3.962 11 C 0.022 3.978 12 C -0.537 4.537 13 H 0.078 0.922 14 C -0.130 4.130 15 N -0.510 5.510 16 Si 0.717 3.283 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.249 4.249 21 C -0.180 4.180 22 O -0.053 6.053 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.169 0.831 29 H 0.175 0.825 30 H 0.241 0.759 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.567 -10.985 10.941 15.515 hybrid contribution -1.135 -0.360 -0.228 1.212 sum -0.568 -11.345 10.714 15.615 Atomic orbital electron populations 1.21804 0.93717 1.02388 1.03018 1.20148 0.96562 0.87263 1.04290 1.22761 1.02089 0.95088 0.84298 1.21500 1.08632 0.94427 0.99458 1.21873 1.01703 0.98745 0.93056 1.22420 1.08761 0.85303 0.94852 1.16617 0.78774 0.85131 0.82147 1.90836 1.51594 1.22813 1.76410 1.45891 1.62403 1.20095 1.04905 1.21081 0.95850 0.90103 0.89195 1.19030 0.91359 0.98892 0.88516 1.20298 0.94496 0.93629 1.45317 0.92248 1.24972 0.98360 0.95197 0.94431 1.69971 1.34666 0.99156 1.47235 0.86710 0.84913 0.77728 0.78984 1.20199 1.21206 1.20172 1.23057 1.01191 0.95333 1.05296 1.22469 1.01958 0.92444 1.01143 1.84050 1.64260 1.22189 1.34764 0.91556 0.92133 0.91888 0.89715 0.88755 0.83063 0.82481 0.75889 0.90577 0.94166 0.92772 0.91627 0.90314 0.89530 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 37.15 0.37 -0.88 16 2 C -0.05 -0.39 6.47 -27.89 -0.18 -0.57 16 3 C 0.01 0.13 6.57 -35.42 -0.23 -0.10 16 4 C -0.22 -2.73 10.77 -39.89 -0.43 -3.16 16 5 C -0.13 -2.01 10.63 -39.39 -0.42 -2.42 16 6 C -0.06 -1.07 7.13 -36.80 -0.26 -1.33 16 7 C 0.59 12.09 7.78 -12.87 -0.10 11.99 16 8 O -0.54 -12.42 16.85 5.19 0.09 -12.33 16 9 N -0.69 -14.25 5.37 -61.63 -0.33 -14.58 16 10 C 0.16 3.67 5.57 -4.05 -0.02 3.65 16 11 C 0.02 0.54 1.51 -155.66 -0.23 0.30 16 12 C -0.50 -12.99 8.38 -34.44 -0.29 -13.28 16 13 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 14 C 0.07 2.00 5.43 -17.82 -0.10 1.90 16 15 N -0.87 -24.40 12.72 55.43 0.71 -23.70 16 16 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 C -0.21 -4.42 9.94 -26.69 -0.27 -4.69 16 21 C -0.14 -3.25 9.26 -26.70 -0.25 -3.49 16 22 O -0.16 -2.51 10.41 4.98 0.05 -2.45 16 23 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.16 2.20 8.06 -52.48 -0.42 1.77 16 30 H 0.41 8.00 8.01 -40.82 -0.33 7.68 16 31 H 0.08 1.98 8.09 -51.93 -0.42 1.56 16 32 H 0.04 0.88 8.11 -51.93 -0.42 0.45 16 33 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 37 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 325.26 15.07 4.90 4.90 Total: -1.00 -29.76 325.26 -7.38 -37.14 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.36 Total: 7.29 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -2.41 Total: -12.08 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.37 Total: -38.27 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.14 Total: -14.78 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.76 -7.38 -37.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404071401.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.114 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds