Wall clock time and date at job start Mon Mar 30 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50694 * 109.47443 * 2 1 4 4 C 1.35135 * 125.62052 * 89.99491 * 3 2 1 5 5 C 1.40360 * 107.11587 * 180.02562 * 4 3 2 6 6 C 1.36547 * 106.71058 * 0.02562 * 5 4 3 7 7 C 1.46654 * 125.98766 * 179.97438 * 6 5 4 8 8 O 1.21695 * 119.99859 * 354.64155 * 7 6 5 9 9 N 1.34773 * 119.99888 * 174.63871 * 7 6 5 10 10 C 1.46500 * 120.00221 * 185.57279 * 9 7 6 11 11 C 1.52992 * 109.47730 * 185.19633 * 10 9 7 12 12 C 1.50706 * 115.54736 * 57.83477 * 11 10 9 13 13 H 1.07999 * 120.00193 * 264.63811 * 12 11 10 14 14 C 1.37883 * 119.99589 * 84.64497 * 12 11 10 15 15 N 1.31506 * 120.00091 * 1.96709 * 14 12 11 16 16 Si 1.86807 * 119.99698 * 181.96801 * 14 12 11 17 17 H 1.48502 * 109.47054 * 59.99863 * 16 14 12 18 18 H 1.48498 * 109.46604 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46982 * 299.99963 * 16 14 12 20 20 C 1.53001 * 117.50060 * 272.17453 * 11 10 9 21 21 C 1.52993 * 117.50636 * 203.51011 * 11 10 9 22 22 O 1.33934 * 125.61476 * 270.31200 * 3 2 1 23 23 H 1.09002 * 109.47306 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47495 * 300.00188 * 1 2 3 25 25 H 1.08999 * 109.47314 * 60.00301 * 1 2 3 26 26 H 1.08997 * 109.46932 * 239.99415 * 2 1 3 27 27 H 1.09006 * 109.47040 * 119.99978 * 2 1 3 28 28 H 1.07997 * 126.43823 * 0.03187 * 4 3 2 29 29 H 1.08004 * 126.64091 * 179.97438 * 5 4 3 30 30 H 0.97004 * 120.00172 * 5.56588 * 9 7 6 31 31 H 1.09006 * 109.46806 * 305.19400 * 10 9 7 32 32 H 1.09002 * 109.47380 * 65.19326 * 10 9 7 33 33 H 0.97005 * 120.00090 * 185.01437 * 15 14 12 34 34 H 1.08996 * 117.49555 * 359.97438 * 20 11 10 35 35 H 1.09002 * 117.50083 * 145.01659 * 20 11 10 36 36 H 1.09000 * 117.50308 * 214.98217 * 21 11 10 37 37 H 1.09004 * 117.49408 * 359.97208 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2946 2.1628 1.0985 5 6 2.7379 3.4179 0.6530 6 6 2.7228 3.3778 -0.7118 7 6 3.1080 4.4710 -1.6103 8 8 3.3894 5.5634 -1.1536 9 7 3.1504 4.2658 -2.9416 10 6 3.6515 5.3180 -3.8294 11 6 3.4735 4.8843 -5.2857 12 6 2.0611 4.5596 -5.6991 13 1 1.7143 3.5370 -5.6797 14 6 1.2118 5.5681 -6.1024 15 7 1.6456 6.8081 -6.1632 16 14 -0.5552 5.1730 -6.5623 17 1 -1.2464 4.5666 -5.3962 18 1 -1.2544 6.4217 -6.9585 19 1 -0.5690 4.2167 -7.6983 20 6 4.6010 4.0699 -5.9231 21 6 4.3851 5.5292 -6.3315 22 8 2.2868 2.1580 -1.0888 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8932 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.1841 1.8490 2.1260 29 1 3.0328 4.2536 1.2703 30 1 2.8492 3.4214 -3.3121 31 1 3.0937 6.2379 -3.6535 32 1 4.7088 5.4902 -3.6282 33 1 1.0304 7.5273 -6.3762 34 1 5.4698 3.8435 -5.3050 35 1 4.3213 3.2996 -6.6419 36 1 3.9635 5.7185 -7.3186 37 1 5.1115 6.2630 -5.9820 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404071401.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:09 Heat of formation + Delta-G solvation = -29.786898 kcal Electronic energy + Delta-G solvation = -19489.574963 eV Core-core repulsion = 16426.202584 eV Total energy + Delta-G solvation = -3063.372379 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.71139 -40.52899 -38.50279 -35.36316 -34.91903 -33.99654 -33.84319 -30.30889 -28.11732 -27.21196 -24.98170 -23.11968 -22.87619 -22.24293 -21.36800 -21.01335 -19.34339 -18.04051 -17.47350 -16.91504 -16.71871 -16.50441 -15.98221 -15.65889 -15.18845 -14.94226 -14.55157 -14.13809 -13.95117 -13.90749 -13.79972 -13.50421 -13.22892 -12.94687 -12.82952 -12.45675 -12.42075 -12.04555 -11.90259 -11.59684 -11.30779 -11.02970 -10.99824 -10.44920 -10.21612 -9.94732 -9.45607 -8.13029 -6.26316 0.02205 1.36124 1.40224 1.41204 1.47819 1.61944 2.13133 2.29382 2.40900 3.15665 3.45434 3.59504 3.91411 3.96714 4.20588 4.27971 4.35893 4.49769 4.52784 4.60226 4.63285 4.66322 4.84663 4.93518 4.97573 5.00100 5.03300 5.08766 5.26442 5.35123 5.41785 5.48076 5.54035 5.65779 5.73911 5.92261 6.33028 6.58042 6.80624 7.08116 7.43400 8.94654 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017682 B = 0.005656 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.172308 B = 4948.937773 C = 5667.638326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.045 4.045 3 C 0.020 3.980 4 C -0.220 4.220 5 C -0.121 4.121 6 C -0.105 4.105 7 C 0.588 3.412 8 O -0.574 6.574 9 N -0.686 5.686 10 C 0.175 3.825 11 C -0.003 4.003 12 C -0.505 4.505 13 H 0.060 0.940 14 C 0.026 3.974 15 N -0.906 5.906 16 Si 0.946 3.054 17 H -0.275 1.275 18 H -0.289 1.289 19 H -0.267 1.267 20 C -0.178 4.178 21 C -0.150 4.150 22 O -0.173 6.173 23 H 0.089 0.911 24 H 0.063 0.937 25 H 0.039 0.961 26 H 0.090 0.910 27 H 0.129 0.871 28 H 0.190 0.810 29 H 0.163 0.837 30 H 0.411 0.589 31 H 0.035 0.965 32 H 0.049 0.951 33 H 0.259 0.741 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.083 -14.728 12.557 19.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.082 4.082 3 C -0.032 4.032 4 C -0.238 4.238 5 C -0.141 4.141 6 C -0.157 4.157 7 C 0.376 3.624 8 O -0.457 6.457 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.004 4.004 12 C -0.542 4.542 13 H 0.078 0.922 14 C -0.175 4.175 15 N -0.543 5.543 16 Si 0.772 3.228 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.192 1.192 20 C -0.215 4.215 21 C -0.188 4.188 22 O -0.069 6.069 23 H 0.108 0.892 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.109 0.891 27 H 0.147 0.853 28 H 0.207 0.793 29 H 0.181 0.819 30 H 0.247 0.753 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.229 -13.861 12.387 18.591 hybrid contribution -1.040 0.408 -0.590 1.263 sum -0.811 -13.453 11.798 17.912 Atomic orbital electron populations 1.21811 0.93272 1.03692 1.02071 1.20446 0.96748 0.84739 1.06290 1.23758 0.99618 0.96250 0.83569 1.21901 1.07850 0.92837 1.01216 1.22202 0.99714 1.00047 0.92181 1.21827 1.13048 0.85866 0.94912 1.16968 0.77737 0.85624 0.82096 1.90795 1.53307 1.24600 1.76985 1.45786 1.62759 1.19675 1.05068 1.20726 0.95663 0.89124 0.89361 1.19079 0.91363 1.01069 0.88873 1.20601 0.95759 0.93529 1.44360 0.92195 1.25677 1.01882 0.95167 0.94776 1.70091 1.35624 0.99860 1.48718 0.85805 0.80777 0.77431 0.78799 1.20076 1.21424 1.19206 1.23048 1.00324 0.93980 1.04197 1.22392 1.02159 0.94384 0.99847 1.84027 1.64720 1.21856 1.36337 0.89173 0.91793 0.94145 0.89144 0.85323 0.79280 0.81915 0.75330 0.94660 0.93271 0.93169 0.89080 0.89695 0.91672 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.89 71.98 0.71 -1.29 16 2 C -0.05 -0.61 6.47 29.84 0.19 -0.42 16 3 C 0.02 0.46 6.57 24.97 0.16 0.63 16 4 C -0.22 -4.71 10.77 22.07 0.24 -4.48 16 5 C -0.12 -3.48 10.63 22.39 0.24 -3.24 16 6 C -0.10 -3.66 7.13 24.07 0.17 -3.49 16 7 C 0.59 24.82 7.78 86.44 0.67 25.49 16 8 O -0.57 -27.58 16.85 -4.33 -0.07 -27.65 16 9 N -0.69 -29.13 5.37 -467.11 -2.51 -31.63 16 10 C 0.18 8.23 5.57 86.38 0.48 8.71 16 11 C 0.00 -0.15 1.51 -52.93 -0.08 -0.23 16 12 C -0.50 -26.45 8.38 25.60 0.21 -26.24 16 13 H 0.06 3.06 7.81 -2.91 -0.02 3.03 16 14 C 0.03 1.40 5.43 84.66 0.46 1.86 16 15 N -0.91 -51.94 12.72 21.45 0.27 -51.67 16 16 Si 0.95 43.19 29.54 68.60 2.03 45.22 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 C -0.18 -7.21 9.94 30.62 0.30 -6.91 16 21 C -0.15 -6.87 9.26 30.62 0.28 -6.59 16 22 O -0.17 -5.35 10.41 -5.08 -0.05 -5.41 16 23 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.16 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.41 16.41 8.01 -92.71 -0.74 15.66 16 31 H 0.03 1.93 8.09 -2.38 -0.02 1.91 16 32 H 0.05 2.18 8.11 -2.39 -0.02 2.16 16 33 H 0.26 14.40 8.32 -92.70 -0.77 13.63 16 34 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 36 H 0.06 3.25 8.14 -2.39 -0.02 3.23 16 37 H 0.07 3.20 8.14 -2.38 -0.02 3.18 16 Total: -1.00 -66.00 325.26 4.04 -61.96 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.32 Total: 25.37 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 4.05 Total: -16.18 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -2.23 Total: -83.31 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.13 Total: -33.06 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -66.00 4.04 -61.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404071401.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.170 kcal (2) G-P(sol) polarization free energy of solvation -65.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds