Wall clock time and date at job start Mon Mar 30 2020 07:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35913 * 116.99828 * 180.02562 * 3 2 1 5 5 C 1.38500 * 119.98225 * 0.02562 * 4 3 2 6 6 C 1.39490 * 119.78993 * 180.02562 * 5 4 3 7 7 C 1.47856 * 120.11371 * 179.97438 * 6 5 4 8 8 O 1.21555 * 120.00501 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99629 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99863 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47377 * 180.02562 * 10 9 7 12 12 H 1.08004 * 119.99875 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00344 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99752 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00177 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47187 * 89.99675 * 15 13 11 17 17 H 1.48493 * 109.47461 * 210.00017 * 15 13 11 18 18 H 1.48506 * 109.46999 * 329.99862 * 15 13 11 19 19 C 1.39597 * 119.76613 * 359.97438 * 6 5 4 20 20 C 1.37968 * 119.96818 * 0.02562 * 19 6 5 21 21 C 1.38287 * 120.20266 * 359.72263 * 20 19 6 22 22 C 1.50700 * 119.88145 * 180.27310 * 21 20 19 23 23 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 28 28 H 1.07998 * 120.10428 * 359.97382 * 5 4 3 29 29 H 0.96991 * 120.00197 * 359.97438 * 9 7 6 30 30 H 1.09003 * 109.47446 * 300.00434 * 10 9 7 31 31 H 1.09005 * 109.47194 * 59.99699 * 10 9 7 32 32 H 0.96999 * 119.99606 * 180.02562 * 14 13 11 33 33 H 1.07997 * 120.01843 * 180.02562 * 19 6 5 34 34 H 1.08000 * 119.90160 * 180.02562 * 20 19 6 35 35 H 1.08996 * 109.47565 * 270.27805 * 22 21 20 36 36 H 1.09002 * 109.47149 * 30.28065 * 22 21 20 37 37 H 1.09004 * 109.47220 * 150.27640 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5255 -0.0005 5 6 4.1970 0.4269 -0.0016 6 6 5.5793 0.6143 -0.0016 7 6 6.4863 -0.5534 -0.0022 8 8 6.0278 -1.6792 -0.0021 9 7 7.8215 -0.3695 -0.0027 10 6 8.7202 -1.5265 -0.0027 11 6 10.1504 -1.0517 -0.0027 12 1 10.3682 0.0062 -0.0023 13 6 11.1810 -1.9676 -0.0032 14 7 10.9158 -3.2557 -0.0032 15 14 12.9538 -1.3790 -0.0040 16 1 13.4242 -1.2231 1.3959 17 1 13.8054 -2.3736 -0.7044 18 1 13.0412 -0.0722 -0.7040 19 6 6.1032 1.9083 -0.0011 20 6 5.2540 2.9956 0.0000 21 6 3.8839 2.8083 -0.0053 22 6 2.9630 4.0012 -0.0103 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.7858 -0.5717 -0.0016 29 1 8.1874 0.5288 -0.0031 30 1 8.5376 -2.1284 0.8875 31 1 8.5369 -2.1289 -0.8924 32 1 11.6408 -3.9001 -0.0032 33 1 7.1727 2.0581 -0.0015 34 1 5.6605 3.9962 -0.0001 35 1 2.7408 4.2931 1.0160 36 1 3.4455 4.8305 -0.5276 37 1 2.0365 3.7429 -0.5233 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427627545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:43 Heat of formation + Delta-G solvation = -66.711983 kcal Electronic energy + Delta-G solvation = -18985.110204 eV Core-core repulsion = 15920.136633 eV Total energy + Delta-G solvation = -3064.973571 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41710 -38.82231 -37.20792 -34.28100 -33.04951 -32.26539 -31.75719 -29.75025 -28.04548 -26.46668 -24.23511 -22.95629 -22.10074 -21.31058 -19.92684 -18.44402 -16.72739 -16.24163 -16.14790 -15.83732 -15.18416 -14.94937 -14.43649 -14.29711 -13.85444 -13.77515 -13.64355 -12.88866 -12.86911 -12.74774 -12.34071 -12.05952 -11.99731 -11.96118 -11.54755 -11.38398 -11.00293 -10.99320 -10.91310 -10.79625 -10.33257 -9.42221 -9.21085 -8.82260 -8.75243 -8.18750 -7.88901 -6.18116 -4.25244 0.98226 1.41742 3.08623 3.23741 3.25424 3.29820 3.32271 3.98940 4.12535 4.34660 4.73654 4.77092 4.78546 4.87762 5.10030 5.14240 5.16336 5.18173 5.35736 5.42312 5.54791 5.56158 5.59806 5.61364 5.78788 5.82359 6.06091 6.27775 6.41374 6.43941 6.70243 7.28189 7.32645 7.37678 7.48853 7.64310 7.94485 8.57209 8.74529 9.02806 9.41176 10.92157 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032118 B = 0.003831 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.589450 B = 7307.181093 C = 8147.717228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.314 6.314 4 C 0.117 3.883 5 C -0.151 4.151 6 C -0.087 4.087 7 C 0.538 3.462 8 O -0.553 6.553 9 N -0.702 5.702 10 C 0.248 3.752 11 C -0.544 4.544 12 H 0.063 0.937 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.905 3.095 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 C -0.121 4.121 20 C -0.092 4.092 21 C -0.104 4.104 22 C -0.104 4.104 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.140 0.860 29 H 0.391 0.609 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.266 0.734 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.726 12.864 0.001 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.228 6.228 4 C 0.072 3.928 5 C -0.171 4.171 6 C -0.090 4.090 7 C 0.323 3.677 8 O -0.433 6.433 9 N -0.350 5.350 10 C 0.128 3.872 11 C -0.583 4.583 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.732 3.268 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.140 4.140 20 C -0.110 4.110 21 C -0.105 4.105 22 C -0.161 4.161 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.158 0.842 29 H 0.225 0.775 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.070 11.975 -0.006 20.852 hybrid contribution 1.376 0.292 0.017 1.407 sum -15.695 12.267 0.012 19.920 Atomic orbital electron populations 1.21757 0.92766 1.02865 1.03249 1.22828 0.95712 0.81941 1.02025 1.86021 1.18636 1.29290 1.88900 1.18635 0.82402 0.93298 0.98421 1.21333 0.92921 0.98785 1.04012 1.20048 0.93596 0.93918 1.01475 1.18253 0.83092 0.88189 0.78162 1.90717 1.76631 1.24586 1.51383 1.46428 1.05218 1.12036 1.71338 1.19168 0.86881 0.83209 0.97944 1.21212 0.90245 0.93421 1.53381 0.91842 1.24952 0.99693 0.94709 0.94634 1.69975 1.32835 1.00643 1.48796 0.86398 0.83627 0.78553 0.78243 1.20429 1.20985 1.19699 1.21293 1.00284 0.91482 1.00952 1.20797 0.91534 0.99059 0.99586 1.19373 0.94330 0.92481 1.04359 1.20618 0.98573 0.94642 1.02247 0.91642 0.91645 0.90351 0.91738 0.91751 0.84225 0.77482 0.95294 0.95280 0.92408 0.85118 0.84924 0.91370 0.91635 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.05 0.52 5.46 37.16 0.20 0.72 16 3 O -0.31 -3.92 9.16 -19.47 -0.18 -4.10 16 4 C 0.12 1.63 6.65 -39.27 -0.26 1.37 16 5 C -0.15 -2.39 8.58 -39.02 -0.33 -2.72 16 6 C -0.09 -1.49 5.87 -104.99 -0.62 -2.11 16 7 C 0.54 11.53 7.77 -12.32 -0.10 11.43 16 8 O -0.55 -13.83 16.35 5.32 0.09 -13.74 16 9 N -0.70 -15.34 5.50 -62.42 -0.34 -15.69 16 10 C 0.25 6.67 5.43 -5.20 -0.03 6.64 16 11 C -0.54 -14.82 9.28 -34.44 -0.32 -15.14 16 12 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 15 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 19 C -0.12 -1.70 9.54 -39.17 -0.37 -2.07 16 20 C -0.09 -1.09 9.68 -39.66 -0.38 -1.47 16 21 C -0.10 -1.29 5.90 -104.39 -0.62 -1.90 16 22 C -0.10 -0.98 9.78 36.01 0.35 -0.62 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 27 H 0.06 0.67 7.66 -51.93 -0.40 0.27 16 28 H 0.14 2.23 5.88 -52.49 -0.31 1.92 16 29 H 0.39 7.31 6.35 -40.82 -0.26 7.05 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.13 1.63 6.40 -52.49 -0.34 1.30 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 37 H 0.07 0.67 7.52 -51.93 -0.39 0.28 16 LS Contribution 317.20 15.07 4.78 4.78 Total: -1.00 -32.52 317.20 -7.13 -39.65 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -5.00 Total: 3.62 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -2.19 Total: -4.95 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.39 Total: -41.06 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.09 Total: -17.84 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.52 -7.13 -39.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427627545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.064 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds