Wall clock time and date at job start Mon Mar 30 2020 07:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35913 * 116.99828 * 180.02562 * 3 2 1 5 5 C 1.38500 * 119.98225 * 0.02562 * 4 3 2 6 6 C 1.39490 * 119.78993 * 180.02562 * 5 4 3 7 7 C 1.47856 * 120.11371 * 179.97438 * 6 5 4 8 8 O 1.21555 * 120.00501 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99629 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99863 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47377 * 180.02562 * 10 9 7 12 12 H 1.08004 * 119.99875 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00344 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99752 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00177 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47187 * 89.99675 * 15 13 11 17 17 H 1.48493 * 109.47461 * 210.00017 * 15 13 11 18 18 H 1.48506 * 109.46999 * 329.99862 * 15 13 11 19 19 C 1.39597 * 119.76613 * 359.97438 * 6 5 4 20 20 C 1.37968 * 119.96818 * 0.02562 * 19 6 5 21 21 C 1.38287 * 120.20266 * 359.72263 * 20 19 6 22 22 C 1.50700 * 119.88145 * 180.27310 * 21 20 19 23 23 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 28 28 H 1.07998 * 120.10428 * 359.97382 * 5 4 3 29 29 H 0.96991 * 120.00197 * 359.97438 * 9 7 6 30 30 H 1.09003 * 109.47446 * 300.00434 * 10 9 7 31 31 H 1.09005 * 109.47194 * 59.99699 * 10 9 7 32 32 H 0.96999 * 119.99606 * 180.02562 * 14 13 11 33 33 H 1.07997 * 120.01843 * 180.02562 * 19 6 5 34 34 H 1.08000 * 119.90160 * 180.02562 * 20 19 6 35 35 H 1.08996 * 109.47565 * 270.27805 * 22 21 20 36 36 H 1.09002 * 109.47149 * 30.28065 * 22 21 20 37 37 H 1.09004 * 109.47220 * 150.27640 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3537 1.5255 -0.0005 5 6 4.1970 0.4269 -0.0016 6 6 5.5793 0.6143 -0.0016 7 6 6.4863 -0.5534 -0.0022 8 8 6.0278 -1.6792 -0.0021 9 7 7.8215 -0.3695 -0.0027 10 6 8.7202 -1.5265 -0.0027 11 6 10.1504 -1.0517 -0.0027 12 1 10.3682 0.0062 -0.0023 13 6 11.1810 -1.9676 -0.0032 14 7 10.9158 -3.2557 -0.0032 15 14 12.9538 -1.3790 -0.0040 16 1 13.4242 -1.2231 1.3959 17 1 13.8054 -2.3736 -0.7044 18 1 13.0412 -0.0722 -0.7040 19 6 6.1032 1.9083 -0.0011 20 6 5.2540 2.9956 0.0000 21 6 3.8839 2.8083 -0.0053 22 6 2.9630 4.0012 -0.0103 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.7858 -0.5717 -0.0016 29 1 8.1874 0.5288 -0.0031 30 1 8.5376 -2.1284 0.8875 31 1 8.5369 -2.1289 -0.8924 32 1 11.6408 -3.9001 -0.0032 33 1 7.1727 2.0581 -0.0015 34 1 5.6605 3.9962 -0.0001 35 1 2.7408 4.2931 1.0160 36 1 3.4455 4.8305 -0.5276 37 1 2.0365 3.7429 -0.5233 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427627545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:43 Heat of formation + Delta-G solvation = -88.375425 kcal Electronic energy + Delta-G solvation = -18986.049601 eV Core-core repulsion = 15920.136633 eV Total energy + Delta-G solvation = -3065.912969 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.58021 -40.35692 -38.34313 -36.27239 -34.55364 -33.87392 -32.58294 -30.82091 -29.74748 -27.88240 -25.30448 -24.62339 -23.41422 -22.39283 -21.45203 -19.93633 -18.37059 -17.54122 -17.31570 -17.15447 -16.70169 -16.44011 -16.21506 -15.88262 -14.94750 -14.77746 -14.71964 -14.39276 -14.07226 -14.04479 -13.59085 -13.42998 -13.15851 -12.93714 -12.83240 -12.74952 -12.63196 -12.34606 -12.22395 -12.03218 -11.71959 -11.51807 -10.98538 -10.83124 -10.05314 -9.81769 -9.20458 -8.30922 -6.48221 -0.23424 0.34742 1.43217 1.46011 1.57281 1.82733 2.14992 2.27633 2.47920 2.78939 3.04265 3.63933 3.76654 3.94976 3.99347 4.05517 4.14044 4.23412 4.34433 4.49952 4.71935 4.73497 4.86262 4.90150 4.92188 5.01886 5.16160 5.18078 5.24464 5.26723 5.30774 5.41013 5.43383 5.61994 5.73753 5.80120 6.30751 6.60653 6.78400 7.18529 7.34445 8.81547 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032118 B = 0.003831 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.589450 B = 7307.181093 C = 8147.717228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.042 3.958 3 O -0.314 6.314 4 C 0.110 3.890 5 C -0.164 4.164 6 C -0.116 4.116 7 C 0.536 3.464 8 O -0.601 6.601 9 N -0.696 5.696 10 C 0.265 3.735 11 C -0.558 4.558 12 H 0.086 0.914 13 C 0.004 3.996 14 N -0.931 5.931 15 Si 0.988 3.012 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.254 1.254 19 C -0.116 4.116 20 C -0.081 4.081 21 C -0.095 4.095 22 C -0.103 4.103 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.125 0.875 29 H 0.409 0.591 30 H -0.010 1.010 31 H -0.010 1.010 32 H 0.270 0.730 33 H 0.146 0.854 34 H 0.176 0.824 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.585 16.671 -0.001 23.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 O -0.228 6.228 4 C 0.064 3.936 5 C -0.184 4.184 6 C -0.119 4.119 7 C 0.324 3.676 8 O -0.484 6.484 9 N -0.345 5.345 10 C 0.143 3.857 11 C -0.595 4.595 12 H 0.104 0.896 13 C -0.196 4.196 14 N -0.569 5.569 15 Si 0.810 3.190 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.177 1.177 19 C -0.135 4.135 20 C -0.099 4.099 21 C -0.096 4.096 22 C -0.159 4.159 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.142 0.858 29 H 0.246 0.754 30 H 0.008 0.992 31 H 0.008 0.992 32 H 0.078 0.922 33 H 0.164 0.836 34 H 0.193 0.807 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.953 15.835 -0.007 23.199 hybrid contribution 1.179 -0.864 0.020 1.462 sum -15.775 14.971 0.013 21.748 Atomic orbital electron populations 1.21765 0.90309 1.04118 1.03741 1.23028 0.97623 0.81120 1.01477 1.86032 1.17789 1.30304 1.88699 1.18806 0.82770 0.93462 0.98512 1.21284 0.92893 0.99124 1.05107 1.19687 0.93088 0.93317 1.05781 1.18993 0.83164 0.89093 0.76316 1.90675 1.77357 1.27035 1.53367 1.46119 1.05117 1.11512 1.71784 1.18635 0.88530 0.84228 0.94355 1.21597 0.90073 0.94647 1.53227 0.89590 1.26097 1.05179 0.94618 0.93689 1.70142 1.34666 1.02356 1.49777 0.85114 0.76650 0.78545 0.78659 1.19521 1.20941 1.17722 1.21504 1.01527 0.90564 0.99885 1.21235 0.90945 1.00128 0.97562 1.19909 0.95298 0.92773 1.01607 1.20715 0.97947 0.93853 1.03409 0.91107 0.91105 0.88758 0.92381 0.92396 0.85756 0.75392 0.99197 0.99176 0.92166 0.83607 0.80666 0.90040 0.89058 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 10.28 71.98 0.74 -1.26 16 2 C 0.04 0.88 5.46 71.98 0.39 1.28 16 3 O -0.31 -7.56 9.16 -92.57 -0.85 -8.41 16 4 C 0.11 2.94 6.65 22.47 0.15 3.09 16 5 C -0.16 -5.35 8.58 22.63 0.19 -5.16 16 6 C -0.12 -4.02 5.87 -20.10 -0.12 -4.14 16 7 C 0.54 24.19 7.77 86.79 0.67 24.86 16 8 O -0.60 -32.38 16.35 -3.89 -0.06 -32.44 16 9 N -0.70 -31.47 5.50 -469.68 -2.58 -34.05 16 10 C 0.26 15.01 5.43 85.63 0.46 15.47 16 11 C -0.56 -30.70 9.28 25.60 0.24 -30.46 16 12 H 0.09 4.24 7.60 -2.91 -0.02 4.22 16 13 C 0.00 0.22 5.46 84.66 0.46 0.68 16 14 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 15 Si 0.99 42.31 29.54 68.60 2.03 44.34 16 16 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.25 -10.04 7.11 99.48 0.71 -9.34 16 19 C -0.12 -3.02 9.54 22.53 0.21 -2.81 16 20 C -0.08 -1.61 9.68 22.22 0.21 -1.40 16 21 C -0.09 -2.04 5.90 -19.72 -0.12 -2.16 16 22 C -0.10 -1.49 9.78 71.24 0.70 -0.80 16 23 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.27 7.66 -2.39 -0.02 1.25 16 27 H 0.06 1.27 7.66 -2.39 -0.02 1.25 16 28 H 0.12 4.31 5.88 -2.91 -0.02 4.29 16 29 H 0.41 15.18 6.35 -92.72 -0.59 14.59 16 30 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 32 H 0.27 15.25 8.31 -92.71 -0.77 14.47 16 33 H 0.15 3.27 6.40 -2.91 -0.02 3.25 16 34 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 0.91 8.09 -2.39 -0.02 0.89 16 37 H 0.07 1.06 7.52 -2.39 -0.02 1.04 16 Total: -1.00 -74.51 317.20 3.51 -71.00 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.49 Total: 18.68 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 4.21 Total: -2.80 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -2.30 Total: -90.37 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.91 Total: -40.85 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -74.51 3.51 -71.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427627545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.379 kcal (2) G-P(sol) polarization free energy of solvation -74.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds