Wall clock time and date at job start Mon Mar 30 2020 07:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31816 * 120.14104 * 2 1 4 4 N 1.28304 * 122.25698 * 179.97438 * 3 2 1 5 5 C 1.32050 * 122.37805 * 0.02562 * 4 3 2 6 6 C 1.38311 * 119.93554 * 359.97438 * 5 4 3 7 7 C 1.39343 * 120.13381 * 179.72807 * 2 1 3 8 8 N 1.39582 * 121.09273 * 0.02562 * 7 2 1 9 9 C 1.34770 * 119.99971 * 204.09022 * 8 7 2 10 10 O 1.21277 * 120.00120 * 5.67433 * 9 8 7 11 11 C 1.50697 * 120.00226 * 185.67213 * 9 8 7 12 12 C 1.52995 * 109.47755 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47395 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.47136 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46990 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99955 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99612 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00316 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99710 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47101 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47172 * 120.00305 * 19 17 15 22 22 H 1.48502 * 109.47005 * 240.00224 * 19 17 15 23 23 H 1.09002 * 109.47203 * 89.99380 * 1 2 3 24 24 H 1.08997 * 109.47231 * 329.99597 * 1 2 3 25 25 H 1.08998 * 109.47286 * 209.99825 * 1 2 3 26 26 H 1.08009 * 120.03361 * 179.97438 * 5 4 3 27 27 H 1.07993 * 121.05776 * 180.02562 * 6 5 4 28 28 H 0.97001 * 119.99502 * 24.08942 * 8 7 2 29 29 H 1.09005 * 109.47041 * 300.00633 * 11 9 8 30 30 H 1.09004 * 109.47105 * 59.99813 * 11 9 8 31 31 H 1.09003 * 109.46854 * 300.00558 * 12 11 9 32 32 H 1.09004 * 109.46987 * 59.99716 * 12 11 9 33 33 H 1.08995 * 109.47428 * 300.00066 * 13 12 11 34 34 H 1.09004 * 109.47125 * 59.99997 * 13 12 11 35 35 H 1.08995 * 109.47146 * 300.00398 * 14 13 12 36 36 H 1.09001 * 109.46920 * 60.00608 * 14 13 12 37 37 H 0.97002 * 120.00339 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1688 1.1399 0.0000 4 7 3.4510 1.1873 0.0005 5 6 4.1988 0.0990 0.0005 6 6 3.6018 -1.1487 0.0006 7 6 2.2065 -1.2051 0.0057 8 7 1.5346 -2.4286 0.0110 9 6 2.1440 -3.5299 0.4926 10 8 3.2347 -3.4400 1.0151 11 6 1.4701 -4.8733 0.3820 12 6 2.3672 -5.9466 1.0015 13 6 1.6827 -7.3103 0.8897 14 6 2.5803 -8.3838 1.5087 15 6 1.9062 -9.7271 1.3980 16 1 0.9351 -9.8072 0.9324 17 6 2.5299 -10.8539 1.8903 18 7 3.7127 -10.7563 2.4568 19 14 1.6948 -12.5191 1.7524 20 1 0.3811 -12.3598 1.0786 21 1 2.5498 -13.4375 0.9583 22 1 1.4897 -13.0840 3.1105 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 0.8899 0.5139 25 1 -0.3634 -0.8900 0.5138 26 1 5.2756 0.1830 0.0005 27 1 4.1959 -2.0505 0.0010 28 1 0.6291 -2.4860 -0.3320 29 1 0.5175 -4.8466 0.9113 30 1 1.2956 -5.1069 -0.6683 31 1 3.3200 -5.9734 0.4726 32 1 2.5413 -5.7128 2.0518 33 1 0.7302 -7.2832 1.4189 34 1 1.5083 -7.5443 -0.1605 35 1 3.5325 -8.4107 0.9791 36 1 2.7550 -8.1500 2.5589 37 1 4.1514 -11.5490 2.8034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588957196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:36 Heat of formation + Delta-G solvation = -3.302004 kcal Electronic energy + Delta-G solvation = -18569.804767 eV Core-core repulsion = 15539.873609 eV Total energy + Delta-G solvation = -3029.931157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.68576 -39.99036 -36.16897 -35.06940 -33.72977 -32.85042 -31.97857 -29.83343 -28.52834 -26.16774 -24.57356 -23.27517 -22.39703 -20.79764 -20.14005 -18.68683 -17.79056 -16.73734 -16.31560 -16.19796 -15.64514 -15.40056 -14.85741 -14.48309 -14.22097 -14.19289 -13.48373 -13.33426 -12.87683 -12.74922 -12.54503 -11.86869 -11.72388 -11.68321 -11.10988 -11.07909 -10.68264 -10.65393 -10.54233 -10.50498 -10.14912 -9.74195 -9.72346 -9.32574 -9.05696 -8.99904 -8.36832 -6.01280 -4.04130 0.49087 0.64923 2.25637 2.46791 3.29036 3.32607 3.36580 3.39984 3.75886 4.02232 4.15815 4.42859 4.45450 4.73922 4.86622 4.99708 5.05292 5.07921 5.11465 5.23827 5.34409 5.49909 5.58361 5.65696 5.82693 5.96427 6.10282 6.13554 6.38841 6.69167 6.79408 6.88501 7.09786 7.66539 7.68095 7.81076 7.99169 8.40739 8.50205 9.03696 9.60107 11.10035 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.052658 B = 0.002805 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.609800 B = 9980.223609 C =10423.330991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.039 3.961 3 N -0.227 5.227 4 N -0.264 5.264 5 C 0.057 3.943 6 C -0.139 4.139 7 C 0.157 3.843 8 N -0.667 5.667 9 C 0.513 3.487 10 O -0.505 6.505 11 C -0.137 4.137 12 C -0.105 4.105 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.521 4.521 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.175 0.825 27 H 0.170 0.830 28 H 0.418 0.582 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.362 19.909 -7.076 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.109 4.109 3 N -0.069 5.069 4 N -0.107 5.107 5 C -0.106 4.106 6 C -0.170 4.170 7 C 0.049 3.951 8 N -0.313 5.313 9 C 0.303 3.697 10 O -0.378 6.378 11 C -0.177 4.177 12 C -0.143 4.143 13 C -0.148 4.148 14 C -0.018 4.018 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.103 0.897 24 H 0.107 0.893 25 H 0.094 0.906 26 H 0.192 0.808 27 H 0.187 0.813 28 H 0.255 0.745 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.495 21.413 -6.610 23.074 hybrid contribution -0.660 -2.629 -0.174 2.716 sum -6.156 18.784 -6.784 20.899 Atomic orbital electron populations 1.20646 0.87424 1.04341 1.03670 1.22756 0.99005 0.88955 1.00234 1.72860 1.02155 1.23438 1.08476 1.72887 0.99070 1.27525 1.11169 1.24227 1.02620 0.88878 0.94866 1.22669 0.93614 1.01354 0.99411 1.18739 0.92817 0.86703 0.96831 1.43769 1.19058 1.06278 1.62227 1.21575 0.86170 0.85999 0.75990 1.90698 1.20612 1.85955 1.40497 1.21874 1.01234 0.90208 1.04354 1.21505 0.98129 0.93570 1.01130 1.21652 0.99367 0.93312 1.00460 1.19099 0.94641 0.92019 0.95991 1.21300 1.04000 0.92470 1.38185 0.92681 1.25042 0.94941 0.99221 0.95355 1.69977 1.14545 1.29255 1.39634 0.86555 0.79576 0.84227 0.77741 1.19769 1.21019 1.21013 0.89692 0.89298 0.90619 0.80798 0.81308 0.74475 0.88378 0.88254 0.91565 0.91566 0.93322 0.93329 0.96570 0.96571 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 9.69 36.00 0.35 -0.26 16 2 C 0.04 0.39 6.89 -82.19 -0.57 -0.18 16 3 N -0.23 -2.82 11.42 33.72 0.39 -2.44 16 4 N -0.26 -3.35 11.50 30.51 0.35 -3.00 16 5 C 0.06 0.60 11.30 -17.43 -0.20 0.41 16 6 C -0.14 -1.55 8.87 -39.03 -0.35 -1.90 16 7 C 0.16 1.63 6.46 -83.39 -0.54 1.09 16 8 N -0.67 -5.65 5.01 -9.65 -0.05 -5.70 16 9 C 0.51 5.84 7.66 -10.99 -0.08 5.75 16 10 O -0.50 -7.64 13.22 5.56 0.07 -7.57 16 11 C -0.14 -1.46 5.70 -27.89 -0.16 -1.61 16 12 C -0.11 -1.66 4.50 -26.74 -0.12 -1.78 16 13 C -0.11 -2.10 5.15 -26.73 -0.14 -2.23 16 14 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 15 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 19 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.33 7.05 -51.93 -0.37 -0.04 16 26 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 27 H 0.17 1.99 5.96 -52.49 -0.31 1.68 16 28 H 0.42 2.02 7.50 -40.82 -0.31 1.72 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 32 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 317.03 15.07 4.78 4.78 Total: -1.00 -34.40 317.03 -6.27 -40.67 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -5.17 Total: -3.17 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -2.35 Total: -13.77 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 1.42 Total: -37.36 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.07 Total: -7.57 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.40 -6.27 -40.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588957196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.371 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds