Wall clock time and date at job start Mon Mar 30 2020 07:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31816 * 120.14104 * 2 1 4 4 N 1.28304 * 122.25698 * 179.97438 * 3 2 1 5 5 C 1.32050 * 122.37805 * 0.02562 * 4 3 2 6 6 C 1.38311 * 119.93554 * 359.97438 * 5 4 3 7 7 C 1.39343 * 120.13381 * 179.72807 * 2 1 3 8 8 N 1.39582 * 121.09273 * 0.02562 * 7 2 1 9 9 C 1.34770 * 119.99971 * 204.09022 * 8 7 2 10 10 O 1.21277 * 120.00120 * 5.67433 * 9 8 7 11 11 C 1.50697 * 120.00226 * 185.67213 * 9 8 7 12 12 C 1.52995 * 109.47755 * 180.02562 * 11 9 8 13 13 C 1.52994 * 109.47395 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.47136 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46990 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99955 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99612 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00316 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99710 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47101 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47172 * 120.00305 * 19 17 15 22 22 H 1.48502 * 109.47005 * 240.00224 * 19 17 15 23 23 H 1.09002 * 109.47203 * 89.99380 * 1 2 3 24 24 H 1.08997 * 109.47231 * 329.99597 * 1 2 3 25 25 H 1.08998 * 109.47286 * 209.99825 * 1 2 3 26 26 H 1.08009 * 120.03361 * 179.97438 * 5 4 3 27 27 H 1.07993 * 121.05776 * 180.02562 * 6 5 4 28 28 H 0.97001 * 119.99502 * 24.08942 * 8 7 2 29 29 H 1.09005 * 109.47041 * 300.00633 * 11 9 8 30 30 H 1.09004 * 109.47105 * 59.99813 * 11 9 8 31 31 H 1.09003 * 109.46854 * 300.00558 * 12 11 9 32 32 H 1.09004 * 109.46987 * 59.99716 * 12 11 9 33 33 H 1.08995 * 109.47428 * 300.00066 * 13 12 11 34 34 H 1.09004 * 109.47125 * 59.99997 * 13 12 11 35 35 H 1.08995 * 109.47146 * 300.00398 * 14 13 12 36 36 H 1.09001 * 109.46920 * 60.00608 * 14 13 12 37 37 H 0.97002 * 120.00339 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1688 1.1399 0.0000 4 7 3.4510 1.1873 0.0005 5 6 4.1988 0.0990 0.0005 6 6 3.6018 -1.1487 0.0006 7 6 2.2065 -1.2051 0.0057 8 7 1.5346 -2.4286 0.0110 9 6 2.1440 -3.5299 0.4926 10 8 3.2347 -3.4400 1.0151 11 6 1.4701 -4.8733 0.3820 12 6 2.3672 -5.9466 1.0015 13 6 1.6827 -7.3103 0.8897 14 6 2.5803 -8.3838 1.5087 15 6 1.9062 -9.7271 1.3980 16 1 0.9351 -9.8072 0.9324 17 6 2.5299 -10.8539 1.8903 18 7 3.7127 -10.7563 2.4568 19 14 1.6948 -12.5191 1.7524 20 1 0.3811 -12.3598 1.0786 21 1 2.5498 -13.4375 0.9583 22 1 1.4897 -13.0840 3.1105 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 0.8899 0.5139 25 1 -0.3634 -0.8900 0.5138 26 1 5.2756 0.1830 0.0005 27 1 4.1959 -2.0505 0.0010 28 1 0.6291 -2.4860 -0.3320 29 1 0.5175 -4.8466 0.9113 30 1 1.2956 -5.1069 -0.6683 31 1 3.3200 -5.9734 0.4726 32 1 2.5413 -5.7128 2.0518 33 1 0.7302 -7.2832 1.4189 34 1 1.5083 -7.5443 -0.1605 35 1 3.5325 -8.4107 0.9791 36 1 2.7550 -8.1500 2.5589 37 1 4.1514 -11.5490 2.8034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588957196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:36 Heat of formation + Delta-G solvation = -26.793423 kcal Electronic energy + Delta-G solvation = -18570.823431 eV Core-core repulsion = 15539.873609 eV Total energy + Delta-G solvation = -3030.949822 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.50878 -40.89532 -37.11993 -36.53174 -34.67477 -34.47380 -32.98941 -31.32566 -29.21529 -27.70839 -25.75053 -24.13316 -23.79629 -21.91206 -21.55193 -19.51922 -18.66714 -18.37409 -17.58665 -17.17321 -16.59093 -16.47668 -16.24305 -15.68039 -15.49635 -15.05200 -14.55063 -14.28020 -13.90780 -13.81063 -13.59473 -13.36029 -13.29896 -12.87389 -12.58490 -12.32127 -12.16611 -12.14958 -11.90947 -11.55911 -11.36275 -11.29195 -11.06209 -10.94682 -10.55302 -10.54339 -9.80226 -8.18823 -6.30479 -0.35727 -0.13094 1.39458 1.41198 1.41384 1.54735 1.67510 2.41934 2.51532 3.05465 3.14545 3.28408 3.38230 3.64564 3.92060 4.01516 4.14598 4.22729 4.33663 4.55821 4.62112 4.68219 4.70167 4.83472 4.85513 4.87775 5.04591 5.13298 5.19000 5.33716 5.35475 5.40189 5.58424 5.79853 5.89709 6.13527 6.26087 6.87110 6.89213 7.39507 7.67425 8.93473 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.052658 B = 0.002805 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.609800 B = 9980.223609 C =10423.330991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.045 3.955 3 N -0.256 5.256 4 N -0.292 5.292 5 C 0.057 3.943 6 C -0.153 4.153 7 C 0.151 3.849 8 N -0.645 5.645 9 C 0.516 3.484 10 O -0.550 6.550 11 C -0.124 4.124 12 C -0.099 4.099 13 C -0.096 4.096 14 C 0.017 3.983 15 C -0.539 4.539 16 H 0.067 0.933 17 C -0.007 4.007 18 N -0.938 5.938 19 Si 0.967 3.033 20 H -0.256 1.256 21 H -0.280 1.280 22 H -0.280 1.280 23 H 0.108 0.892 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.199 0.801 27 H 0.161 0.839 28 H 0.438 0.562 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.063 0.937 35 H -0.015 1.015 36 H -0.016 1.016 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.203 19.735 -8.258 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.104 4.104 3 N -0.097 5.097 4 N -0.134 5.134 5 C -0.107 4.107 6 C -0.185 4.185 7 C 0.043 3.957 8 N -0.293 5.293 9 C 0.307 3.693 10 O -0.426 6.426 11 C -0.164 4.164 12 C -0.137 4.137 13 C -0.134 4.134 14 C -0.020 4.020 15 C -0.577 4.577 16 H 0.085 0.915 17 C -0.204 4.204 18 N -0.579 5.579 19 Si 0.791 3.209 20 H -0.180 1.180 21 H -0.206 1.206 22 H -0.206 1.206 23 H 0.126 0.874 24 H 0.108 0.892 25 H 0.115 0.885 26 H 0.216 0.784 27 H 0.178 0.822 28 H 0.280 0.720 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.003 0.997 36 H 0.003 0.997 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.391 21.278 -7.821 24.172 hybrid contribution 0.251 -2.568 0.207 2.588 sum -8.140 18.710 -7.614 21.778 Atomic orbital electron populations 1.20842 0.84381 1.05443 1.05439 1.23294 1.00822 0.87924 0.98373 1.72785 1.02307 1.24860 1.09788 1.72817 0.99648 1.28563 1.12326 1.24567 1.03729 0.88287 0.94117 1.22722 0.94415 1.01212 1.00101 1.18849 0.92719 0.87491 0.96688 1.43493 1.19666 1.04876 1.61224 1.21673 0.85515 0.86798 0.75338 1.90704 1.22653 1.86539 1.42706 1.21743 1.00790 0.87673 1.06146 1.21285 0.98316 0.93856 1.00286 1.21443 0.98513 0.92732 1.00687 1.19071 0.94685 0.93994 0.94246 1.21802 1.04508 0.93592 1.37834 0.91508 1.26068 0.95567 1.03857 0.94912 1.70129 1.16366 1.30570 1.40826 0.85373 0.78970 0.78651 0.77888 1.18002 1.20620 1.20623 0.87409 0.89234 0.88475 0.78439 0.82190 0.72030 0.85139 0.85140 0.93447 0.93614 0.91871 0.91865 0.99676 0.99734 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 9.69 71.23 0.69 -0.21 16 2 C 0.05 0.83 6.89 42.83 0.29 1.12 16 3 N -0.26 -6.22 11.42 -47.24 -0.54 -6.76 16 4 N -0.29 -7.42 11.50 -57.38 -0.66 -8.08 16 5 C 0.06 1.20 11.30 84.68 0.96 2.16 16 6 C -0.15 -3.39 8.87 22.63 0.20 -3.19 16 7 C 0.15 2.91 6.46 38.51 0.25 3.16 16 8 N -0.65 -9.12 5.01 -302.84 -1.52 -10.64 16 9 C 0.52 10.71 7.66 87.66 0.67 11.39 16 10 O -0.55 -16.61 13.22 -3.02 -0.04 -16.65 16 11 C -0.12 -2.23 5.70 29.85 0.17 -2.06 16 12 C -0.10 -3.06 4.50 30.59 0.14 -2.92 16 13 C -0.10 -3.54 5.15 30.59 0.16 -3.38 16 14 C 0.02 0.90 4.97 29.85 0.15 1.04 16 15 C -0.54 -30.19 9.11 25.60 0.23 -29.96 16 16 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 17 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 18 N -0.94 -57.88 13.29 21.45 0.28 -57.59 16 19 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H 0.11 0.50 8.14 -2.39 -0.02 0.49 16 24 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.10 0.44 7.05 -2.39 -0.02 0.42 16 26 H 0.20 2.89 8.06 -2.91 -0.02 2.87 16 27 H 0.16 3.86 5.96 -2.91 -0.02 3.85 16 28 H 0.44 2.37 7.50 -92.71 -0.70 1.68 16 29 H 0.13 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.62 8.10 -2.39 -0.02 1.60 16 32 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 36 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 37 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -77.89 317.03 4.31 -73.59 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 0.38 Total: 3.18 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 4.37 Total: -22.81 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -2.43 Total: -83.07 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.04 Total: -16.65 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -77.89 4.31 -73.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588957196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.793 kcal (2) G-P(sol) polarization free energy of solvation -77.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds