Wall clock time and date at job start Mon Mar 30 2020 07:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99664 * 2 1 4 4 H 1.48500 * 109.47389 * 240.00183 * 3 2 1 5 5 H 1.48500 * 109.47293 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47255 * 120.00287 * 3 2 1 7 7 C 1.37868 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00236 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99932 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47393 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47345 * 179.97438 * 10 9 7 12 12 C 1.46899 * 111.00150 * 185.74544 * 11 10 9 13 13 C 1.50697 * 112.90798 * 76.18533 * 12 11 10 14 14 C 1.38225 * 120.01213 * 355.14651 * 13 12 11 15 15 C 1.38227 * 120.02184 * 179.72278 * 14 13 12 16 16 C 1.38269 * 120.05250 * 0.55256 * 15 14 13 17 17 C 1.38174 * 120.02570 * 359.71791 * 16 15 14 18 18 C 1.38441 * 120.01431 * 175.41553 * 13 12 11 19 19 F 1.35102 * 120.02548 * 0.02924 * 18 13 12 20 20 C 1.53775 * 113.61377 * 304.93285 * 12 11 10 21 21 C 1.53778 * 87.08258 * 270.88131 * 20 12 11 22 22 C 1.53779 * 87.08349 * 334.56780 * 21 20 12 23 23 H 0.96993 * 120.00161 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47272 * 59.99807 * 9 7 2 25 25 H 1.09002 * 109.47213 * 299.99756 * 9 7 2 26 26 H 1.08997 * 109.47261 * 59.99901 * 10 9 7 27 27 H 1.09004 * 109.47335 * 299.99555 * 10 9 7 28 28 H 1.00901 * 110.99691 * 309.69813 * 11 10 9 29 29 H 1.07997 * 119.98601 * 359.97438 * 14 13 12 30 30 H 1.07994 * 119.97073 * 180.27065 * 15 14 13 31 31 H 1.08001 * 119.98570 * 179.75050 * 16 15 14 32 32 H 1.07994 * 120.01134 * 180.02562 * 17 16 15 33 33 H 1.09007 * 113.61411 * 156.33479 * 20 12 11 34 34 H 1.08997 * 113.61592 * 25.43575 * 20 12 11 35 35 H 1.09006 * 113.60924 * 89.11626 * 21 20 12 36 36 H 1.08998 * 113.61510 * 220.01567 * 21 20 12 37 37 H 1.08999 * 113.61111 * 139.97593 * 22 21 20 38 38 H 1.09001 * 113.61505 * 270.88329 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6619 -0.0027 11 7 1.5111 -4.9342 -0.0033 12 6 2.4297 -6.0724 0.1330 13 6 2.9371 -6.2513 1.5407 14 6 2.6084 -5.3293 2.5166 15 6 3.0690 -5.4963 3.8091 16 6 3.8684 -6.5795 4.1248 17 6 4.2029 -7.4994 3.1496 18 6 3.7374 -7.3363 1.8556 19 9 4.0643 -8.2348 0.9012 20 6 3.5403 -6.0983 -0.9302 21 6 2.5747 -6.9141 -1.8058 22 6 1.9010 -7.3700 -0.5008 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8920 25 1 0.6242 -2.5575 0.8880 26 1 2.8721 -3.6050 0.8873 27 1 2.8721 -3.6034 -0.8927 28 1 0.8095 -4.9469 0.7218 29 1 1.9881 -4.4803 2.2700 30 1 2.8081 -4.7778 4.5719 31 1 4.2310 -6.7067 5.1341 32 1 4.8270 -8.3455 3.3965 33 1 4.4263 -6.6540 -0.6227 34 1 3.7765 -5.1159 -1.3389 35 1 1.9327 -6.2995 -2.4371 36 1 3.0589 -7.7229 -2.3530 37 1 0.8137 -7.4141 -0.5631 38 1 2.3387 -8.2733 -0.0759 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592144283.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:02 Heat of formation + Delta-G solvation = 0.800847 kcal Electronic energy + Delta-G solvation = -19976.010683 eV Core-core repulsion = 16926.337477 eV Total energy + Delta-G solvation = -3049.673206 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.98408 -40.07161 -37.94218 -34.55697 -32.58763 -31.02803 -30.37568 -28.69281 -25.71993 -24.97598 -23.67944 -22.47415 -21.56753 -20.53928 -18.77874 -17.74696 -16.58909 -16.21675 -16.02280 -15.68585 -15.13470 -14.61408 -14.48529 -14.41224 -13.88997 -13.41354 -13.24806 -12.83800 -12.42288 -12.18406 -12.06069 -11.97169 -11.50353 -11.28224 -11.06168 -10.97208 -10.60610 -10.45227 -10.38528 -10.17693 -9.86016 -9.38200 -9.18658 -8.93029 -8.56402 -8.37951 -7.90620 -6.01940 -4.04741 1.16142 1.21336 3.32133 3.36745 3.39094 3.57583 4.24934 4.39517 4.54974 4.69362 4.74671 4.86303 4.93636 5.08968 5.13482 5.24747 5.34157 5.40798 5.57010 5.85729 5.91145 5.94310 6.05480 6.09002 6.14465 6.22778 6.26155 6.34206 6.39723 6.42989 6.59245 6.65255 6.90205 6.95583 7.44722 7.66592 7.80227 7.89644 8.03791 8.40356 9.02016 9.59380 11.09343 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.022391 B = 0.005304 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.210019 B = 5277.879928 C = 6035.062183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.058 3.942 11 N -0.659 5.659 12 C 0.127 3.873 13 C -0.122 4.122 14 C -0.091 4.091 15 C -0.124 4.124 16 C -0.101 4.101 17 C -0.157 4.157 18 C 0.099 3.901 19 F -0.136 7.136 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.131 4.131 23 H 0.261 0.739 24 H 0.025 0.975 25 H 0.013 0.987 26 H 0.024 0.976 27 H 0.063 0.937 28 H 0.340 0.660 29 H 0.140 0.860 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.545 -15.723 5.160 17.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.069 4.069 11 N -0.290 5.290 12 C 0.034 3.966 13 C -0.125 4.125 14 C -0.109 4.109 15 C -0.142 4.142 16 C -0.119 4.119 17 C -0.176 4.176 18 C 0.080 3.920 19 F -0.114 7.114 20 C -0.169 4.169 21 C -0.161 4.161 22 C -0.169 4.169 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.031 0.969 26 H 0.042 0.958 27 H 0.081 0.919 28 H 0.160 0.840 29 H 0.158 0.842 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.354 -15.654 4.411 17.461 hybrid contribution 0.800 0.962 0.945 1.568 sum 7.154 -14.692 5.356 17.197 Atomic orbital electron populations 1.69955 1.06017 1.26743 1.50496 1.24982 0.94820 0.99170 0.95240 0.86664 0.79587 0.83153 0.78624 1.20205 1.21255 1.20299 1.21104 0.92933 0.90916 1.51089 0.92812 1.19089 0.93964 0.90522 0.97688 1.22328 0.97447 0.87815 0.99360 1.60631 1.14040 1.01688 1.52610 1.21004 0.94370 0.93690 0.87556 1.20797 0.98802 0.94451 0.98488 1.21272 0.99071 0.98338 0.92263 1.21248 0.98168 0.98090 0.96737 1.20969 0.97872 0.94120 0.98976 1.21084 1.03058 1.01642 0.91856 1.17464 0.99441 0.89094 0.86033 1.91407 1.90872 1.66107 1.63063 1.23124 0.96171 1.01523 0.96079 1.22621 0.98261 0.99125 0.96082 1.23153 1.01045 0.95944 0.96743 0.92911 0.95615 0.96896 0.95794 0.91868 0.84036 0.84195 0.85301 0.85345 0.85129 0.90106 0.90339 0.89384 0.92183 0.90983 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.63 5.17 -27.89 -0.14 0.49 16 10 C 0.06 1.19 4.45 -3.83 -0.02 1.17 16 11 N -0.66 -11.62 6.10 -100.31 -0.61 -12.23 16 12 C 0.13 1.95 0.99 -131.94 -0.13 1.82 16 13 C -0.12 -1.81 5.20 -104.55 -0.54 -2.36 16 14 C -0.09 -1.35 8.06 -39.59 -0.32 -1.67 16 15 C -0.12 -1.55 10.04 -39.57 -0.40 -1.95 16 16 C -0.10 -1.11 10.04 -39.59 -0.40 -1.51 16 17 C -0.16 -1.83 10.03 -39.52 -0.40 -2.23 16 18 C 0.10 1.36 6.67 -39.42 -0.26 1.09 16 19 F -0.14 -1.84 12.88 2.25 0.03 -1.81 16 20 C -0.13 -1.97 6.78 -25.92 -0.18 -2.15 16 21 C -0.12 -1.69 7.99 -25.92 -0.21 -1.90 16 22 C -0.13 -1.82 7.10 -25.92 -0.18 -2.00 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.02 0.49 5.91 -51.93 -0.31 0.18 16 27 H 0.06 1.34 6.41 -51.93 -0.33 1.00 16 28 H 0.34 5.86 7.51 -39.29 -0.29 5.56 16 29 H 0.14 2.25 5.27 -52.49 -0.28 1.97 16 30 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.08 1.16 6.47 -51.92 -0.34 0.82 16 34 H 0.08 1.28 6.17 -51.93 -0.32 0.96 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.16 5.65 -51.93 -0.29 0.87 16 LS Contribution 304.53 15.07 4.59 4.59 Total: -1.00 -29.39 304.53 -8.95 -38.33 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.08 Total: 4.96 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -3.59 Total: -24.49 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.12 Total: -38.09 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.03 Total: -1.81 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.39 -8.95 -38.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592144283.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.134 kcal (2) G-P(sol) polarization free energy of solvation -29.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds