Wall clock time and date at job start Mon Mar 30 2020 07:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99664 * 2 1 4 4 H 1.48500 * 109.47389 * 240.00183 * 3 2 1 5 5 H 1.48500 * 109.47293 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47255 * 120.00287 * 3 2 1 7 7 C 1.37868 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00236 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99932 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47393 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47345 * 179.97438 * 10 9 7 12 12 C 1.46899 * 111.00150 * 185.74544 * 11 10 9 13 13 C 1.50697 * 112.90798 * 76.18533 * 12 11 10 14 14 C 1.38225 * 120.01213 * 355.14651 * 13 12 11 15 15 C 1.38227 * 120.02184 * 179.72278 * 14 13 12 16 16 C 1.38269 * 120.05250 * 0.55256 * 15 14 13 17 17 C 1.38174 * 120.02570 * 359.71791 * 16 15 14 18 18 C 1.38441 * 120.01431 * 175.41553 * 13 12 11 19 19 F 1.35102 * 120.02548 * 0.02924 * 18 13 12 20 20 C 1.53775 * 113.61377 * 304.93285 * 12 11 10 21 21 C 1.53778 * 87.08258 * 270.88131 * 20 12 11 22 22 C 1.53779 * 87.08349 * 334.56780 * 21 20 12 23 23 H 0.96993 * 120.00161 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47272 * 59.99807 * 9 7 2 25 25 H 1.09002 * 109.47213 * 299.99756 * 9 7 2 26 26 H 1.08997 * 109.47261 * 59.99901 * 10 9 7 27 27 H 1.09004 * 109.47335 * 299.99555 * 10 9 7 28 28 H 1.00901 * 110.99691 * 309.69813 * 11 10 9 29 29 H 1.07997 * 119.98601 * 359.97438 * 14 13 12 30 30 H 1.07994 * 119.97073 * 180.27065 * 15 14 13 31 31 H 1.08001 * 119.98570 * 179.75050 * 16 15 14 32 32 H 1.07994 * 120.01134 * 180.02562 * 17 16 15 33 33 H 1.09007 * 113.61411 * 156.33479 * 20 12 11 34 34 H 1.08997 * 113.61592 * 25.43575 * 20 12 11 35 35 H 1.09006 * 113.60924 * 89.11626 * 21 20 12 36 36 H 1.08998 * 113.61510 * 220.01567 * 21 20 12 37 37 H 1.08999 * 113.61111 * 139.97593 * 22 21 20 38 38 H 1.09001 * 113.61505 * 270.88329 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6619 -0.0027 11 7 1.5111 -4.9342 -0.0033 12 6 2.4297 -6.0724 0.1330 13 6 2.9371 -6.2513 1.5407 14 6 2.6084 -5.3293 2.5166 15 6 3.0690 -5.4963 3.8091 16 6 3.8684 -6.5795 4.1248 17 6 4.2029 -7.4994 3.1496 18 6 3.7374 -7.3363 1.8556 19 9 4.0643 -8.2348 0.9012 20 6 3.5403 -6.0983 -0.9302 21 6 2.5747 -6.9141 -1.8058 22 6 1.9010 -7.3700 -0.5008 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8920 25 1 0.6242 -2.5575 0.8880 26 1 2.8721 -3.6050 0.8873 27 1 2.8721 -3.6034 -0.8927 28 1 0.8095 -4.9469 0.7218 29 1 1.9881 -4.4803 2.2700 30 1 2.8081 -4.7778 4.5719 31 1 4.2310 -6.7067 5.1341 32 1 4.8270 -8.3455 3.3965 33 1 4.4263 -6.6540 -0.6227 34 1 3.7765 -5.1159 -1.3389 35 1 1.9327 -6.2995 -2.4371 36 1 3.0589 -7.7229 -2.3530 37 1 0.8137 -7.4141 -0.5631 38 1 2.3387 -8.2733 -0.0759 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592144283.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:01 Heat of formation + Delta-G solvation = -15.591924 kcal Electronic energy + Delta-G solvation = -19976.721527 eV Core-core repulsion = 16926.337477 eV Total energy + Delta-G solvation = -3050.384050 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.00238 -41.23850 -38.98976 -36.29789 -34.49296 -32.22880 -31.35965 -30.47679 -27.06711 -26.36844 -25.27439 -23.49756 -22.62615 -22.40471 -20.00499 -18.85479 -18.42179 -17.57160 -17.08627 -16.72699 -16.61900 -16.22657 -15.84511 -15.53111 -15.27184 -14.78789 -14.56120 -14.19321 -13.95463 -13.59753 -13.21973 -13.13733 -13.01176 -12.85724 -12.67782 -12.46644 -12.20423 -12.12001 -11.65012 -11.46504 -11.37365 -11.24783 -11.12608 -10.56597 -9.95213 -9.58508 -9.35465 -8.20879 -6.32250 0.16823 0.22453 1.39709 1.42461 1.50493 2.39561 2.58870 3.10373 3.12734 3.31759 3.58499 3.66701 3.75055 3.86692 3.96194 4.12175 4.32648 4.37943 4.42204 4.51789 4.62520 4.75523 4.82325 4.88552 4.98712 5.06278 5.09001 5.11073 5.13440 5.25175 5.34986 5.43588 5.47994 5.53872 5.64632 5.78819 5.93630 6.11412 6.25615 6.45689 6.83828 7.37010 8.90888 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.022391 B = 0.005304 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.210019 B = 5277.879928 C = 6035.062183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.034 3.966 10 C 0.083 3.917 11 N -0.662 5.662 12 C 0.119 3.881 13 C -0.138 4.138 14 C -0.114 4.114 15 C -0.128 4.128 16 C -0.091 4.091 17 C -0.151 4.151 18 C 0.088 3.912 19 F -0.137 7.137 20 C -0.133 4.133 21 C -0.118 4.118 22 C -0.122 4.122 23 H 0.264 0.736 24 H -0.006 1.006 25 H -0.006 1.006 26 H 0.025 0.975 27 H 0.056 0.944 28 H 0.341 0.659 29 H 0.116 0.884 30 H 0.144 0.856 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.389 -16.697 6.369 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.004 4.004 10 C -0.045 4.045 11 N -0.292 5.292 12 C 0.027 3.973 13 C -0.141 4.141 14 C -0.133 4.133 15 C -0.146 4.146 16 C -0.109 4.109 17 C -0.169 4.169 18 C 0.068 3.932 19 F -0.115 7.115 20 C -0.170 4.170 21 C -0.155 4.155 22 C -0.160 4.160 23 H 0.073 0.927 24 H 0.012 0.988 25 H 0.012 0.988 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.160 0.840 29 H 0.134 0.866 30 H 0.161 0.839 31 H 0.183 0.817 32 H 0.178 0.822 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.207 -16.649 5.618 19.393 hybrid contribution 0.211 1.207 0.617 1.372 sum 8.419 -15.442 6.235 18.660 Atomic orbital electron populations 1.70089 1.07737 1.27864 1.51283 1.25913 0.95713 1.03166 0.94579 0.85530 0.78315 0.78220 0.79160 1.19336 1.20711 1.19123 1.21517 0.93368 0.92190 1.51106 0.92434 1.18911 0.94160 0.92161 0.95123 1.21861 0.95949 0.87697 0.99000 1.60530 1.14458 1.01305 1.52885 1.21083 0.94304 0.93249 0.88710 1.20690 1.00081 0.95515 0.97847 1.21181 1.00187 0.98176 0.93731 1.21498 0.98049 0.99084 0.95993 1.21377 0.96280 0.92669 1.00524 1.21466 1.02326 1.02350 0.90804 1.17593 0.99770 0.88842 0.86980 1.91397 1.90871 1.65979 1.63289 1.23143 0.96656 1.00927 0.96303 1.22579 0.97675 0.99283 0.95970 1.23123 1.00999 0.95440 0.96424 0.92715 0.98775 0.98787 0.95650 0.92552 0.84006 0.86605 0.83862 0.81665 0.82230 0.89122 0.92162 0.90705 0.89960 0.91164 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.66 13.29 21.44 0.28 -56.37 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.54 -31.10 9.11 25.60 0.23 -30.86 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.03 1.81 5.17 29.85 0.15 1.96 16 10 C 0.08 3.56 4.45 86.30 0.38 3.95 16 11 N -0.66 -24.25 6.10 -471.28 -2.87 -27.12 16 12 C 0.12 3.67 0.99 3.31 0.00 3.68 16 13 C -0.14 -4.04 5.20 -19.82 -0.10 -4.14 16 14 C -0.11 -3.38 8.06 22.26 0.18 -3.20 16 15 C -0.13 -2.99 10.04 22.27 0.22 -2.77 16 16 C -0.09 -1.68 10.04 22.26 0.22 -1.45 16 17 C -0.15 -3.00 10.03 22.31 0.22 -2.78 16 18 C 0.09 2.23 6.67 22.38 0.15 2.38 16 19 F -0.14 -3.40 12.88 44.97 0.58 -2.82 16 20 C -0.13 -3.95 6.78 31.12 0.21 -3.74 16 21 C -0.12 -3.15 7.99 31.12 0.25 -2.90 16 22 C -0.12 -3.30 7.10 31.12 0.22 -3.07 16 23 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 24 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 25 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H 0.03 1.08 5.91 -2.39 -0.01 1.06 16 27 H 0.06 2.48 6.41 -2.39 -0.02 2.46 16 28 H 0.34 12.39 7.51 -89.69 -0.67 11.71 16 29 H 0.12 3.92 5.27 -2.91 -0.02 3.91 16 30 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.09 2.50 6.47 -2.38 -0.02 2.49 16 34 H 0.06 2.00 6.17 -2.39 -0.01 1.98 16 35 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.10 2.48 5.65 -2.39 -0.01 2.46 16 Total: -1.00 -64.07 304.53 3.23 -60.84 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.40 Total: 21.39 kcal Atomic # 6 Polarization: -45.05 SS G_CDS: 2.81 Total: -42.24 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -2.59 Total: -83.49 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.58 Total: -2.82 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -64.07 3.23 -60.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592144283.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.247 kcal (2) G-P(sol) polarization free energy of solvation -64.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds