Wall clock time and date at job start Mon Mar 30 2020 07:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99893 * 2 1 4 4 H 1.48503 * 109.47119 * 270.00067 * 3 2 1 5 5 H 1.48503 * 109.47045 * 29.99869 * 3 2 1 6 6 H 1.48502 * 109.47168 * 149.99892 * 3 2 1 7 7 C 1.37879 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99422 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00420 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47434 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47279 * 180.02562 * 10 9 7 12 12 C 1.46903 * 111.00115 * 175.09581 * 11 10 9 13 13 C 1.50702 * 112.84774 * 293.96690 * 12 11 10 14 14 C 1.38263 * 119.98638 * 154.93858 * 13 12 11 15 15 C 1.38231 * 120.04707 * 180.02562 * 14 13 12 16 16 C 1.38217 * 120.02753 * 0.02562 * 15 14 13 17 17 C 1.38440 * 119.97280 * 359.97438 * 16 15 14 18 18 F 1.35100 * 120.01959 * 180.02562 * 17 16 15 19 19 C 1.38185 * 119.98583 * 334.66846 * 13 12 11 20 20 C 1.53775 * 113.61500 * 162.76823 * 12 11 10 21 21 C 1.54047 * 86.98994 * 270.83693 * 20 12 11 22 22 C 1.53781 * 113.61557 * 65.16126 * 12 11 10 23 23 H 0.96997 * 120.00284 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47242 * 300.00587 * 9 7 2 25 25 H 1.09002 * 109.47384 * 59.99801 * 9 7 2 26 26 H 1.09005 * 109.46661 * 300.00076 * 10 9 7 27 27 H 1.09004 * 109.47140 * 60.00176 * 10 9 7 28 28 H 1.00905 * 110.99956 * 299.04941 * 11 10 9 29 29 H 1.07994 * 119.97751 * 0.02562 * 14 13 12 30 30 H 1.07998 * 119.98049 * 179.97438 * 15 14 13 31 31 H 1.07997 * 120.00696 * 180.02562 * 16 15 14 32 32 H 1.08000 * 120.00927 * 359.97438 * 19 13 12 33 33 H 1.09000 * 113.61516 * 25.43775 * 20 12 11 34 34 H 1.09001 * 113.61460 * 156.32953 * 20 12 11 35 35 H 1.08998 * 113.62468 * 220.02396 * 21 20 12 36 36 H 1.08998 * 113.68699 * 89.12274 * 21 20 12 37 37 H 1.08999 * 113.61272 * 203.66738 * 22 12 11 38 38 H 1.09005 * 113.61096 * 334.48701 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9343 -0.0012 12 6 2.4310 -6.0734 -0.1184 13 6 3.1418 -6.1171 -1.4466 14 6 4.3644 -6.7536 -1.5554 15 6 5.0177 -6.7940 -2.7729 16 6 4.4496 -6.1976 -3.8829 17 6 3.2254 -5.5601 -3.7750 18 9 2.6690 -4.9773 -4.8594 19 6 2.5687 -5.5260 -2.5564 20 6 1.8033 -7.4168 0.2889 21 6 2.2788 -7.1119 1.7221 22 6 3.3704 -6.2332 1.0886 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.8720 -3.6043 -0.8906 27 1 2.8720 -3.6044 0.8895 28 1 0.9336 -5.0190 0.8221 29 1 4.8093 -7.2194 -0.6886 30 1 5.9728 -7.2910 -2.8566 31 1 4.9601 -6.2298 -4.8340 32 1 1.6115 -5.0331 -2.4721 33 1 0.7187 -7.4419 0.1832 34 1 2.2932 -8.2813 -0.1590 35 1 2.6699 -7.9833 2.2472 36 1 1.5553 -6.5507 2.3134 37 1 4.2881 -6.7747 0.8589 38 1 3.5513 -5.3030 1.6272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592144730.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:51 Heat of formation + Delta-G solvation = -5.934742 kcal Electronic energy + Delta-G solvation = -19717.049297 eV Core-core repulsion = 16667.084014 eV Total energy + Delta-G solvation = -3049.965283 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.64865 -40.38807 -37.83008 -34.40920 -32.45191 -31.05779 -30.28020 -28.70348 -25.81909 -25.03130 -23.73446 -22.42896 -21.67269 -20.49008 -18.79199 -17.32528 -16.35516 -16.07350 -15.97347 -15.45487 -15.36667 -15.10344 -14.44854 -14.20315 -13.59870 -13.33772 -13.29432 -12.99086 -12.58585 -12.30146 -12.12124 -11.71182 -11.63549 -11.30248 -11.16280 -10.92868 -10.73438 -10.57123 -10.46519 -10.24220 -9.95855 -9.39465 -9.14956 -8.71095 -8.52240 -8.34217 -7.89564 -5.99095 -4.01467 1.26601 1.37652 3.33028 3.39025 3.42000 3.68238 4.32501 4.40148 4.52541 4.60117 4.71110 4.75489 4.96988 5.01569 5.13821 5.20106 5.37104 5.49247 5.58075 5.69139 5.72464 5.91741 5.96458 6.01289 6.08526 6.14889 6.24972 6.36817 6.37759 6.38093 6.47403 6.68616 6.98414 7.06065 7.45074 7.70952 7.79588 7.93430 8.07507 8.43853 9.05569 9.62362 11.12328 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.016192 B = 0.005899 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.805728 B = 4745.605916 C = 5795.098669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.028 3.972 10 C 0.065 3.935 11 N -0.664 5.664 12 C 0.132 3.868 13 C -0.027 4.027 14 C -0.134 4.134 15 C -0.097 4.097 16 C -0.163 4.163 17 C 0.094 3.906 18 F -0.141 7.141 19 C -0.122 4.122 20 C -0.126 4.126 21 C -0.142 4.142 22 C -0.174 4.174 23 H 0.260 0.740 24 H 0.013 0.987 25 H 0.024 0.976 26 H 0.061 0.939 27 H 0.019 0.981 28 H 0.343 0.657 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.150 0.850 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.670 -16.983 -1.585 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.063 4.063 11 N -0.294 5.294 12 C 0.040 3.960 13 C -0.028 4.028 14 C -0.152 4.152 15 C -0.115 4.115 16 C -0.182 4.182 17 C 0.075 3.925 18 F -0.120 7.120 19 C -0.141 4.141 20 C -0.163 4.163 21 C -0.179 4.179 22 C -0.213 4.213 23 H 0.070 0.930 24 H 0.032 0.968 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.037 0.963 28 H 0.161 0.839 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.168 0.832 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.335 -16.794 -2.298 18.469 hybrid contribution 0.799 1.168 0.650 1.557 sum 8.134 -15.626 -1.649 17.693 Atomic orbital electron populations 1.69968 1.06005 1.26579 1.50661 1.24985 0.94825 0.99164 0.95291 0.86610 0.79808 0.83524 0.78161 1.20605 1.21200 1.19939 1.21156 0.92950 0.90999 1.50866 0.92842 1.19042 0.93949 0.90309 0.97684 1.22204 0.97090 0.87904 0.99083 1.60491 1.21952 1.01085 1.45867 1.20856 0.92385 0.92800 0.89995 1.19414 0.93650 0.95607 0.94118 1.21084 0.95139 1.01138 0.97841 1.20859 0.99631 0.99060 0.91998 1.21081 0.95345 1.01424 1.00351 1.17801 0.93456 0.97373 0.83866 1.91497 1.85167 1.82218 1.53095 1.21264 1.02181 1.00257 0.90355 1.23134 1.01475 0.96009 0.95730 1.22870 0.98762 0.99913 0.96402 1.23784 0.98147 1.00880 0.98516 0.92998 0.96828 0.95713 0.92087 0.96275 0.83855 0.85512 0.85438 0.85282 0.83224 0.90475 0.89711 0.91399 0.90050 0.89651 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.07 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.72 5.27 -27.89 -0.15 0.57 16 10 C 0.06 1.35 5.09 -3.82 -0.02 1.33 16 11 N -0.66 -11.32 5.48 -100.31 -0.55 -11.87 16 12 C 0.13 1.85 1.01 -131.94 -0.13 1.71 16 13 C -0.03 -0.39 4.54 -104.63 -0.47 -0.87 16 14 C -0.13 -1.62 9.24 -39.57 -0.37 -1.98 16 15 C -0.10 -1.09 10.04 -39.59 -0.40 -1.49 16 16 C -0.16 -2.07 10.03 -39.51 -0.40 -2.47 16 17 C 0.09 1.46 7.30 -39.42 -0.29 1.17 16 18 F -0.14 -2.34 17.27 2.25 0.04 -2.30 16 19 C -0.12 -1.98 8.26 -39.51 -0.33 -2.31 16 20 C -0.13 -1.43 7.33 -25.78 -0.19 -1.62 16 21 C -0.14 -1.52 7.75 -25.78 -0.20 -1.72 16 22 C -0.17 -2.15 6.94 -25.92 -0.18 -2.33 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.32 6.55 -51.93 -0.34 0.98 16 27 H 0.02 0.39 6.76 -51.93 -0.35 0.04 16 28 H 0.34 5.57 7.94 -39.29 -0.31 5.26 16 29 H 0.13 1.26 5.93 -52.49 -0.31 0.95 16 30 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 31 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.15 2.70 7.44 -52.49 -0.39 2.31 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.89 7.73 -51.93 -0.40 0.49 16 37 H 0.09 0.91 5.78 -51.93 -0.30 0.61 16 38 H 0.07 1.04 6.70 -51.93 -0.35 0.69 16 LS Contribution 311.96 15.07 4.70 4.70 Total: -1.00 -30.38 311.96 -8.88 -39.26 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.25 Total: 3.24 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -3.53 Total: -23.62 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.19 Total: -38.21 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.38 -8.88 -39.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592144730.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.322 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds