Wall clock time and date at job start Mon Mar 30 2020 07:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99893 * 2 1 4 4 H 1.48503 * 109.47119 * 270.00067 * 3 2 1 5 5 H 1.48503 * 109.47045 * 29.99869 * 3 2 1 6 6 H 1.48502 * 109.47168 * 149.99892 * 3 2 1 7 7 C 1.37879 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99422 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00420 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47434 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47279 * 180.02562 * 10 9 7 12 12 C 1.46903 * 111.00115 * 175.09581 * 11 10 9 13 13 C 1.50702 * 112.84774 * 293.96690 * 12 11 10 14 14 C 1.38263 * 119.98638 * 154.93858 * 13 12 11 15 15 C 1.38231 * 120.04707 * 180.02562 * 14 13 12 16 16 C 1.38217 * 120.02753 * 0.02562 * 15 14 13 17 17 C 1.38440 * 119.97280 * 359.97438 * 16 15 14 18 18 F 1.35100 * 120.01959 * 180.02562 * 17 16 15 19 19 C 1.38185 * 119.98583 * 334.66846 * 13 12 11 20 20 C 1.53775 * 113.61500 * 162.76823 * 12 11 10 21 21 C 1.54047 * 86.98994 * 270.83693 * 20 12 11 22 22 C 1.53781 * 113.61557 * 65.16126 * 12 11 10 23 23 H 0.96997 * 120.00284 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47242 * 300.00587 * 9 7 2 25 25 H 1.09002 * 109.47384 * 59.99801 * 9 7 2 26 26 H 1.09005 * 109.46661 * 300.00076 * 10 9 7 27 27 H 1.09004 * 109.47140 * 60.00176 * 10 9 7 28 28 H 1.00905 * 110.99956 * 299.04941 * 11 10 9 29 29 H 1.07994 * 119.97751 * 0.02562 * 14 13 12 30 30 H 1.07998 * 119.98049 * 179.97438 * 15 14 13 31 31 H 1.07997 * 120.00696 * 180.02562 * 16 15 14 32 32 H 1.08000 * 120.00927 * 359.97438 * 19 13 12 33 33 H 1.09000 * 113.61516 * 25.43775 * 20 12 11 34 34 H 1.09001 * 113.61460 * 156.32953 * 20 12 11 35 35 H 1.08998 * 113.62468 * 220.02396 * 21 20 12 36 36 H 1.08998 * 113.68699 * 89.12274 * 21 20 12 37 37 H 1.08999 * 113.61272 * 203.66738 * 22 12 11 38 38 H 1.09005 * 113.61096 * 334.48701 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9343 -0.0012 12 6 2.4310 -6.0734 -0.1184 13 6 3.1418 -6.1171 -1.4466 14 6 4.3644 -6.7536 -1.5554 15 6 5.0177 -6.7940 -2.7729 16 6 4.4496 -6.1976 -3.8829 17 6 3.2254 -5.5601 -3.7750 18 9 2.6690 -4.9773 -4.8594 19 6 2.5687 -5.5260 -2.5564 20 6 1.8033 -7.4168 0.2889 21 6 2.2788 -7.1119 1.7221 22 6 3.3704 -6.2332 1.0886 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.8720 -3.6043 -0.8906 27 1 2.8720 -3.6044 0.8895 28 1 0.9336 -5.0190 0.8221 29 1 4.8093 -7.2194 -0.6886 30 1 5.9728 -7.2910 -2.8566 31 1 4.9601 -6.2298 -4.8340 32 1 1.6115 -5.0331 -2.4721 33 1 0.7187 -7.4419 0.1832 34 1 2.2932 -8.2813 -0.1590 35 1 2.6699 -7.9833 2.2472 36 1 1.5553 -6.5507 2.3134 37 1 4.2881 -6.7747 0.8589 38 1 3.5513 -5.3030 1.6272 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592144730.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:51 Heat of formation + Delta-G solvation = -23.414746 kcal Electronic energy + Delta-G solvation = -19717.807287 eV Core-core repulsion = 16667.084014 eV Total energy + Delta-G solvation = -3050.723273 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.87039 -41.45863 -38.86438 -36.19024 -34.36373 -32.18411 -31.32611 -30.53854 -26.94792 -26.35387 -25.35199 -23.49106 -22.73829 -22.32200 -19.89411 -18.69213 -18.15421 -17.32611 -17.06716 -16.70304 -16.56272 -16.51828 -16.13361 -15.46152 -14.96094 -14.74574 -14.53231 -14.26815 -13.95345 -13.63546 -13.45259 -13.21978 -12.93219 -12.73089 -12.63553 -12.44340 -12.34237 -12.02839 -11.64310 -11.49307 -11.40686 -11.31516 -11.11536 -10.59019 -9.79221 -9.58114 -9.27480 -8.22977 -6.34441 0.22236 0.33158 1.36997 1.39023 1.49720 2.37673 2.65440 3.10389 3.15078 3.32911 3.59607 3.71647 3.82115 4.00796 4.04529 4.14359 4.21958 4.42881 4.52649 4.54916 4.58765 4.81420 4.84797 4.98114 5.02545 5.10302 5.12529 5.13359 5.19056 5.25908 5.35681 5.41255 5.45779 5.58068 5.65074 5.78824 6.00845 6.13761 6.28084 6.54637 6.82524 7.34750 8.89222 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.016192 B = 0.005899 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.805728 B = 4745.605916 C = 5795.098669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.035 3.965 10 C 0.092 3.908 11 N -0.672 5.672 12 C 0.116 3.884 13 C -0.039 4.039 14 C -0.127 4.127 15 C -0.084 4.084 16 C -0.160 4.160 17 C 0.065 3.935 18 F -0.158 7.158 19 C -0.151 4.151 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.169 4.169 23 H 0.264 0.736 24 H -0.007 1.007 25 H -0.011 1.011 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.345 0.655 29 H 0.158 0.842 30 H 0.171 0.829 31 H 0.153 0.847 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.608 -18.604 -0.925 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.036 4.036 11 N -0.302 5.302 12 C 0.024 3.976 13 C -0.040 4.040 14 C -0.145 4.145 15 C -0.102 4.102 16 C -0.179 4.179 17 C 0.046 3.954 18 F -0.136 7.136 19 C -0.170 4.170 20 C -0.154 4.154 21 C -0.170 4.170 22 C -0.208 4.208 23 H 0.073 0.927 24 H 0.011 0.989 25 H 0.008 0.992 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.164 0.836 29 H 0.176 0.824 30 H 0.188 0.812 31 H 0.170 0.830 32 H 0.132 0.868 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.129 0.871 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.276 -18.438 -1.633 21.171 hybrid contribution -0.133 1.607 0.421 1.667 sum 10.143 -16.831 -1.212 19.688 Atomic orbital electron populations 1.70103 1.07785 1.27808 1.51368 1.25957 0.95765 1.03307 0.94582 0.85459 0.78760 0.78440 0.78480 1.19970 1.20373 1.18600 1.21579 0.93372 0.92344 1.50989 0.92481 1.18877 0.94232 0.92259 0.94860 1.21658 0.95408 0.88084 0.98481 1.60306 1.22844 1.00871 1.46203 1.21096 0.93032 0.92624 0.90840 1.19590 0.94847 0.96153 0.93405 1.21440 0.93729 0.99938 0.99416 1.21369 1.00633 0.97425 0.90734 1.21417 0.93951 1.00301 1.02200 1.18145 0.94987 0.98963 0.83268 1.91444 1.85684 1.82790 1.53727 1.21117 1.01663 1.02163 0.92027 1.23141 1.01196 0.94915 0.96128 1.22833 0.97799 1.00321 0.96004 1.23795 0.99267 1.00646 0.97060 0.92710 0.98886 0.99239 0.93234 0.96022 0.83561 0.82434 0.81151 0.82954 0.86768 0.91169 0.87576 0.88727 0.90849 0.87076 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.13 13.29 21.45 0.28 -57.85 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.96 45.40 29.54 68.60 2.03 47.43 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.54 -32.09 9.11 25.60 0.23 -31.86 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.04 1.94 5.27 29.85 0.16 2.10 16 10 C 0.09 4.00 5.09 86.30 0.44 4.44 16 11 N -0.67 -23.89 5.48 -471.27 -2.58 -26.48 16 12 C 0.12 3.15 1.01 3.31 0.00 3.16 16 13 C -0.04 -1.10 4.54 -19.87 -0.09 -1.19 16 14 C -0.13 -2.63 9.24 22.27 0.21 -2.43 16 15 C -0.08 -1.55 10.04 22.26 0.22 -1.32 16 16 C -0.16 -3.73 10.03 22.31 0.22 -3.51 16 17 C 0.07 2.07 7.30 22.37 0.16 2.23 16 18 F -0.16 -5.51 17.27 44.97 0.78 -4.74 16 19 C -0.15 -5.12 8.26 22.31 0.18 -4.94 16 20 C -0.12 -2.42 7.33 31.21 0.23 -2.19 16 21 C -0.13 -2.49 7.75 31.21 0.24 -2.24 16 22 C -0.17 -3.76 6.94 31.12 0.22 -3.55 16 23 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 24 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 25 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 26 H 0.05 2.25 6.55 -2.38 -0.02 2.23 16 27 H 0.02 0.92 6.76 -2.38 -0.02 0.90 16 28 H 0.35 11.72 7.94 -89.69 -0.71 11.01 16 29 H 0.16 2.27 5.93 -2.91 -0.02 2.25 16 30 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 32 H 0.11 4.59 7.44 -2.91 -0.02 4.57 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.11 1.79 8.09 -2.39 -0.02 1.77 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.51 7.73 -2.39 -0.02 1.49 16 37 H 0.11 1.89 5.78 -2.39 -0.01 1.87 16 38 H 0.05 1.44 6.70 -2.38 -0.02 1.42 16 Total: -1.00 -69.38 311.96 3.75 -65.63 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.35 Total: 16.72 kcal Atomic # 6 Polarization: -43.62 SS G_CDS: 2.89 Total: -40.72 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -2.30 Total: -84.32 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.78 Total: -4.74 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -69.38 3.75 -65.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592144730.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.218 kcal (2) G-P(sol) polarization free energy of solvation -69.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds