Wall clock time and date at job start Mon Mar 30 2020 07:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00102 * 2 1 4 4 H 1.48502 * 109.47526 * 240.00366 * 3 2 1 5 5 H 1.48503 * 109.47324 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47036 * 120.00087 * 3 2 1 7 7 C 1.38809 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00332 * 168.85417 * 7 2 1 9 9 N 1.36939 * 119.99817 * 348.86337 * 7 2 1 10 10 C 1.46924 * 120.63171 * 328.79503 * 9 7 2 11 11 C 1.53184 * 108.89611 * 233.68993 * 10 9 7 12 12 C 1.53048 * 109.31145 * 305.28923 * 11 10 9 13 13 C 1.53041 * 109.53435 * 61.37007 * 12 11 10 14 14 C 1.47208 * 120.81552 * 148.94808 * 9 7 2 15 15 H 1.09001 * 109.55978 * 246.15199 * 14 9 7 16 16 C 1.53006 * 109.65060 * 6.45988 * 14 9 7 17 17 C 1.50694 * 109.46965 * 185.34005 * 16 14 9 18 18 C 1.38218 * 120.01478 * 92.68292 * 17 16 14 19 19 C 1.38223 * 120.02779 * 179.97438 * 18 17 16 20 20 C 1.38271 * 120.05179 * 0.02562 * 19 18 17 21 21 C 1.38180 * 120.02438 * 359.97438 * 20 19 18 22 22 C 1.38435 * 120.01085 * 272.40090 * 17 16 14 23 23 F 1.35101 * 120.02864 * 0.02562 * 22 17 16 24 24 H 0.96999 * 120.00063 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.58525 * 113.82620 * 10 9 7 26 26 H 1.09006 * 109.58385 * 353.54991 * 10 9 7 27 27 H 1.08997 * 109.50317 * 65.24438 * 11 10 9 28 28 H 1.09007 * 109.49817 * 185.34752 * 11 10 9 29 29 H 1.08993 * 109.46068 * 181.38827 * 12 11 10 30 30 H 1.09003 * 109.45910 * 301.36085 * 12 11 10 31 31 H 1.08993 * 109.50196 * 58.58575 * 13 12 11 32 32 H 1.08996 * 109.49624 * 178.68584 * 13 12 11 33 33 H 1.09006 * 109.46948 * 305.33486 * 16 14 9 34 34 H 1.09001 * 109.47172 * 65.33243 * 16 14 9 35 35 H 1.08001 * 119.98818 * 359.97438 * 18 17 16 36 36 H 1.08004 * 119.97790 * 180.02562 * 19 18 17 37 37 H 1.07995 * 119.99180 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.01647 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0750 -1.2109 -0.1813 9 7 1.3449 -2.3770 0.2280 10 6 0.1631 -2.4105 1.1003 11 6 0.3743 -3.4753 2.1811 12 6 0.6988 -4.8147 1.5155 13 6 1.9915 -4.6844 0.7068 14 6 1.7985 -3.6332 -0.3908 15 1 1.0494 -3.9810 -1.1022 16 6 3.1253 -3.3997 -1.1162 17 6 3.5199 -4.6514 -1.8569 18 6 3.1529 -4.8171 -3.1791 19 6 3.5151 -5.9649 -3.8588 20 6 4.2446 -6.9487 -3.2170 21 6 4.6127 -6.7852 -1.8952 22 6 4.2552 -5.6330 -1.2149 23 9 4.6190 -5.4698 0.0759 24 1 -0.4850 0.8400 -0.0004 25 1 -0.7194 -2.6585 0.5105 26 1 0.0271 -1.4359 1.5691 27 1 1.2017 -3.1797 2.8263 28 1 -0.5337 -3.5752 2.7758 29 1 0.8254 -5.5796 2.2816 30 1 -0.1180 -5.0975 0.8514 31 1 2.8036 -4.3774 1.3657 32 1 2.2345 -5.6447 0.2520 33 1 3.0126 -2.5788 -1.8245 34 1 3.8977 -3.1488 -0.3892 35 1 2.5828 -4.0496 -3.6813 36 1 3.2283 -6.0934 -4.8921 37 1 4.5267 -7.8452 -3.7489 38 1 5.1820 -7.5538 -1.3939 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593083495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:36 Heat of formation + Delta-G solvation = -13.547045 kcal Electronic energy + Delta-G solvation = -20400.772813 eV Core-core repulsion = 17350.477436 eV Total energy + Delta-G solvation = -3050.295377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.61462 -39.05110 -37.48937 -33.27587 -33.01501 -30.49108 -30.16640 -29.38981 -26.06884 -24.94473 -22.73158 -22.01860 -21.73826 -20.12116 -18.99065 -17.33781 -16.40868 -16.09291 -15.74751 -15.31484 -14.88046 -14.04443 -13.94051 -13.62867 -13.43864 -13.33940 -12.89135 -12.66783 -12.40000 -12.20137 -12.19304 -11.60425 -11.40661 -10.92513 -10.77520 -10.72134 -10.54512 -10.40602 -10.14148 -9.98941 -9.88670 -9.47882 -9.26363 -8.74198 -8.44425 -8.32384 -6.54845 -5.73678 -3.20672 1.32978 1.37421 3.39445 3.45134 3.46264 3.75023 4.48766 4.50387 4.88016 4.95746 5.07866 5.33600 5.41478 5.48370 5.59198 5.70120 5.77740 5.82427 5.95333 6.05800 6.18105 6.26054 6.28509 6.36986 6.40874 6.50691 6.53164 6.63363 6.74746 6.81714 6.84740 6.90222 7.02993 7.10484 7.19868 7.49671 7.76600 7.83502 8.51743 9.26585 9.89146 10.48716 11.34064 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.020660 B = 0.006701 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.982490 B = 4177.389770 C = 4859.884996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.005 3.995 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.109 4.109 13 C -0.128 4.128 14 C 0.185 3.815 15 H 0.025 0.975 16 C -0.076 4.076 17 C -0.096 4.096 18 C -0.090 4.090 19 C -0.132 4.132 20 C -0.107 4.107 21 C -0.158 4.158 22 C 0.099 3.901 23 F -0.136 7.136 24 H 0.253 0.747 25 H 0.016 0.984 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.836 -12.273 -4.119 14.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.047 3.953 11 C -0.183 4.183 12 C -0.147 4.147 13 C -0.167 4.167 14 C 0.078 3.922 15 H 0.043 0.957 16 C -0.113 4.113 17 C -0.097 4.097 18 C -0.108 4.108 19 C -0.150 4.150 20 C -0.125 4.125 21 C -0.177 4.177 22 C 0.080 3.920 23 F -0.114 7.114 24 H 0.064 0.936 25 H 0.034 0.966 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.729 -12.093 -4.073 13.987 hybrid contribution 0.461 0.810 0.247 0.964 sum 6.190 -11.282 -3.827 13.426 Atomic orbital electron populations 1.69976 1.05238 1.25439 1.54225 1.25131 0.95330 0.98227 1.00716 0.86401 0.78877 0.83529 0.78125 1.20897 1.21652 1.21036 1.19100 0.91090 0.83859 1.43949 0.91626 1.44093 1.32331 1.02693 1.51997 1.20774 0.87958 0.97236 0.89292 1.22201 0.99660 0.96778 0.99648 1.21394 0.97650 0.97271 0.98352 1.22100 0.97523 0.98297 0.98788 1.20384 0.92208 0.87905 0.91691 0.95748 1.20754 0.98594 0.92721 0.99262 1.20300 0.97451 0.96954 0.95024 1.21061 0.98651 0.97854 0.93218 1.21165 0.99418 0.94215 1.00193 1.20887 0.98604 0.99234 0.93819 1.21081 1.03616 0.97220 0.95818 1.17599 0.99503 0.95624 0.79292 1.91496 1.89781 1.95644 1.34482 0.93643 0.96623 0.89457 0.92907 0.93629 0.94017 0.93124 0.92157 0.93737 0.89287 0.90776 0.84962 0.85765 0.85658 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.13 11.06 55.49 0.61 -25.51 16 2 C 0.00 0.13 5.04 -17.43 -0.09 0.04 16 3 Si 0.90 21.65 29.57 -169.99 -5.03 16.62 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.25 -6.73 8.49 -15.06 -0.13 -6.86 16 8 H 0.07 1.72 6.38 -52.48 -0.33 1.39 16 9 N -0.59 -14.74 3.00 -164.56 -0.49 -15.24 16 10 C 0.17 4.24 5.25 -3.72 -0.02 4.22 16 11 C -0.14 -2.92 6.08 -26.61 -0.16 -3.09 16 12 C -0.11 -2.03 5.88 -26.69 -0.16 -2.18 16 13 C -0.13 -2.46 3.97 -26.61 -0.11 -2.57 16 14 C 0.18 3.94 2.94 -67.44 -0.20 3.74 16 15 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 16 C -0.08 -1.47 3.46 -27.88 -0.10 -1.57 16 17 C -0.10 -1.57 4.81 -104.56 -0.50 -2.07 16 18 C -0.09 -1.27 9.69 -39.59 -0.38 -1.66 16 19 C -0.13 -1.54 10.04 -39.58 -0.40 -1.94 16 20 C -0.11 -1.19 10.04 -39.59 -0.40 -1.59 16 21 C -0.16 -2.01 10.03 -39.51 -0.40 -2.41 16 22 C 0.10 1.54 5.97 -39.42 -0.24 1.30 16 23 F -0.14 -2.28 14.65 2.25 0.03 -2.24 16 24 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 2.37 6.10 -51.93 -0.32 2.06 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.22 7.74 -51.93 -0.40 0.82 16 32 H 0.04 0.80 6.33 -51.93 -0.33 0.47 16 33 H 0.09 1.82 7.27 -51.93 -0.38 1.44 16 34 H 0.07 1.50 7.32 -51.93 -0.38 1.12 16 35 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 301.83 15.07 4.55 4.55 Total: -1.00 -29.03 301.83 -9.09 -38.13 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.50 Total: 0.33 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -3.27 Total: -16.63 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.12 Total: -40.75 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.03 Total: -2.24 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.03 -9.09 -38.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593083495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.578 kcal (2) G-P(sol) polarization free energy of solvation -29.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds