Wall clock time and date at job start Mon Mar 30 2020 07:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00102 * 2 1 4 4 H 1.48502 * 109.47526 * 240.00366 * 3 2 1 5 5 H 1.48503 * 109.47324 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47036 * 120.00087 * 3 2 1 7 7 C 1.38809 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00332 * 168.85417 * 7 2 1 9 9 N 1.36939 * 119.99817 * 348.86337 * 7 2 1 10 10 C 1.46924 * 120.63171 * 328.79503 * 9 7 2 11 11 C 1.53184 * 108.89611 * 233.68993 * 10 9 7 12 12 C 1.53048 * 109.31145 * 305.28923 * 11 10 9 13 13 C 1.53041 * 109.53435 * 61.37007 * 12 11 10 14 14 C 1.47208 * 120.81552 * 148.94808 * 9 7 2 15 15 H 1.09001 * 109.55978 * 246.15199 * 14 9 7 16 16 C 1.53006 * 109.65060 * 6.45988 * 14 9 7 17 17 C 1.50694 * 109.46965 * 185.34005 * 16 14 9 18 18 C 1.38218 * 120.01478 * 92.68292 * 17 16 14 19 19 C 1.38223 * 120.02779 * 179.97438 * 18 17 16 20 20 C 1.38271 * 120.05179 * 0.02562 * 19 18 17 21 21 C 1.38180 * 120.02438 * 359.97438 * 20 19 18 22 22 C 1.38435 * 120.01085 * 272.40090 * 17 16 14 23 23 F 1.35101 * 120.02864 * 0.02562 * 22 17 16 24 24 H 0.96999 * 120.00063 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.58525 * 113.82620 * 10 9 7 26 26 H 1.09006 * 109.58385 * 353.54991 * 10 9 7 27 27 H 1.08997 * 109.50317 * 65.24438 * 11 10 9 28 28 H 1.09007 * 109.49817 * 185.34752 * 11 10 9 29 29 H 1.08993 * 109.46068 * 181.38827 * 12 11 10 30 30 H 1.09003 * 109.45910 * 301.36085 * 12 11 10 31 31 H 1.08993 * 109.50196 * 58.58575 * 13 12 11 32 32 H 1.08996 * 109.49624 * 178.68584 * 13 12 11 33 33 H 1.09006 * 109.46948 * 305.33486 * 16 14 9 34 34 H 1.09001 * 109.47172 * 65.33243 * 16 14 9 35 35 H 1.08001 * 119.98818 * 359.97438 * 18 17 16 36 36 H 1.08004 * 119.97790 * 180.02562 * 19 18 17 37 37 H 1.07995 * 119.99180 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.01647 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0750 -1.2109 -0.1813 9 7 1.3449 -2.3770 0.2280 10 6 0.1631 -2.4105 1.1003 11 6 0.3743 -3.4753 2.1811 12 6 0.6988 -4.8147 1.5155 13 6 1.9915 -4.6844 0.7068 14 6 1.7985 -3.6332 -0.3908 15 1 1.0494 -3.9810 -1.1022 16 6 3.1253 -3.3997 -1.1162 17 6 3.5199 -4.6514 -1.8569 18 6 3.1529 -4.8171 -3.1791 19 6 3.5151 -5.9649 -3.8588 20 6 4.2446 -6.9487 -3.2170 21 6 4.6127 -6.7852 -1.8952 22 6 4.2552 -5.6330 -1.2149 23 9 4.6190 -5.4698 0.0759 24 1 -0.4850 0.8400 -0.0004 25 1 -0.7194 -2.6585 0.5105 26 1 0.0271 -1.4359 1.5691 27 1 1.2017 -3.1797 2.8263 28 1 -0.5337 -3.5752 2.7758 29 1 0.8254 -5.5796 2.2816 30 1 -0.1180 -5.0975 0.8514 31 1 2.8036 -4.3774 1.3657 32 1 2.2345 -5.6447 0.2520 33 1 3.0126 -2.5788 -1.8245 34 1 3.8977 -3.1488 -0.3892 35 1 2.5828 -4.0496 -3.6813 36 1 3.2283 -6.0934 -4.8921 37 1 4.5267 -7.8452 -3.7489 38 1 5.1820 -7.5538 -1.3939 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593083495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:35 Heat of formation + Delta-G solvation = -27.894826 kcal Electronic energy + Delta-G solvation = -20401.394980 eV Core-core repulsion = 17350.477436 eV Total energy + Delta-G solvation = -3050.917544 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.81504 -40.27888 -39.07833 -34.98988 -34.67244 -32.05534 -31.50717 -30.88726 -27.64509 -26.82127 -24.05010 -23.47929 -23.18555 -21.61508 -20.77306 -18.49480 -18.26109 -17.33712 -17.18093 -16.53783 -16.46241 -15.74930 -15.44327 -15.07575 -14.98803 -14.84975 -14.37452 -14.13654 -14.00888 -13.68962 -13.47024 -13.05423 -12.80311 -12.76177 -12.49895 -12.47165 -12.15147 -12.01653 -11.78653 -11.72904 -11.58011 -11.15805 -11.05607 -10.52618 -9.81132 -9.48094 -8.59561 -7.83850 -5.33676 0.28065 0.33918 1.45172 1.47321 1.53689 2.50284 2.71879 3.30126 3.41873 3.49889 3.86411 4.00511 4.06532 4.15612 4.18056 4.23020 4.34242 4.47507 4.49828 4.63286 4.66808 4.79818 4.88520 5.02363 5.05095 5.14003 5.17979 5.21270 5.27827 5.30992 5.38286 5.43545 5.51696 5.56370 5.62312 5.69092 5.79986 6.05021 6.43391 7.17667 7.87662 8.42498 9.22001 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.020660 B = 0.006701 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.982490 B = 4177.389770 C = 4859.884996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.048 4.048 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.254 4.254 8 H 0.067 0.933 9 N -0.605 5.605 10 C 0.176 3.824 11 C -0.134 4.134 12 C -0.106 4.106 13 C -0.115 4.115 14 C 0.181 3.819 15 H 0.012 0.988 16 C -0.062 4.062 17 C -0.121 4.121 18 C -0.103 4.103 19 C -0.123 4.123 20 C -0.093 4.093 21 C -0.155 4.155 22 C 0.077 3.923 23 F -0.150 7.150 24 H 0.249 0.751 25 H -0.006 1.006 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.128 0.872 36 H 0.157 0.843 37 H 0.167 0.833 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.075 -14.841 -5.008 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.244 4.244 3 Si 0.791 3.209 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.384 4.384 8 H 0.085 0.915 9 N -0.329 5.329 10 C 0.051 3.949 11 C -0.173 4.173 12 C -0.144 4.144 13 C -0.154 4.154 14 C 0.075 3.925 15 H 0.030 0.970 16 C -0.099 4.099 17 C -0.122 4.122 18 C -0.121 4.121 19 C -0.141 4.141 20 C -0.110 4.110 21 C -0.173 4.173 22 C 0.058 3.942 23 F -0.128 7.128 24 H 0.058 0.942 25 H 0.012 0.988 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.146 0.854 36 H 0.175 0.825 37 H 0.185 0.815 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.988 -14.685 -4.964 17.003 hybrid contribution 0.091 1.513 0.434 1.576 sum 7.079 -13.172 -4.529 15.625 Atomic orbital electron populations 1.70141 1.06571 1.25676 1.55856 1.25845 0.96086 1.01240 1.01196 0.85418 0.77609 0.79610 0.78289 1.20055 1.21918 1.20650 1.19382 0.91378 0.84866 1.42779 0.91549 1.44370 1.32237 1.03552 1.52726 1.20603 0.87280 0.97049 0.89980 1.22048 1.00550 0.96355 0.98302 1.21397 0.97140 0.96819 0.98994 1.21931 0.97594 0.98047 0.97793 1.20526 0.92733 0.86915 0.92283 0.97001 1.20442 0.96996 0.94134 0.98350 1.20058 0.99904 0.96240 0.95994 1.21168 0.99109 0.99198 0.92602 1.21541 0.98172 0.92865 1.01493 1.21398 0.96497 1.00052 0.93092 1.21426 1.03023 0.96389 0.96472 1.17858 1.00511 0.96731 0.79082 1.91455 1.90046 1.95851 1.35485 0.94203 0.98770 0.92711 0.93517 0.91333 0.90858 0.92828 0.93327 0.92019 0.91593 0.92561 0.85374 0.82537 0.81518 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.27 11.06 21.65 0.24 -56.03 16 2 C -0.05 -2.75 5.04 84.86 0.43 -2.33 16 3 Si 0.96 45.72 29.57 68.60 2.03 47.75 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.25 -14.16 8.49 84.03 0.71 -13.45 16 8 H 0.07 3.62 6.38 -2.91 -0.02 3.60 16 9 N -0.60 -31.49 3.00 -674.55 -2.02 -33.51 16 10 C 0.18 8.96 5.25 86.36 0.45 9.41 16 11 C -0.13 -5.39 6.08 30.67 0.19 -5.20 16 12 C -0.11 -3.77 5.88 30.62 0.18 -3.59 16 13 C -0.11 -4.36 3.97 30.67 0.12 -4.24 16 14 C 0.18 7.94 2.94 44.92 0.13 8.07 16 15 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 16 C -0.06 -2.48 3.46 29.85 0.10 -2.38 16 17 C -0.12 -3.92 4.81 -19.82 -0.10 -4.02 16 18 C -0.10 -2.81 9.69 22.26 0.22 -2.59 16 19 C -0.12 -2.44 10.04 22.27 0.22 -2.21 16 20 C -0.09 -1.62 10.04 22.26 0.22 -1.40 16 21 C -0.15 -3.39 10.03 22.32 0.22 -3.16 16 22 C 0.08 2.30 5.97 22.38 0.13 2.43 16 23 F -0.15 -4.95 14.65 44.97 0.66 -4.29 16 24 H 0.25 14.53 8.31 -92.71 -0.77 13.75 16 25 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 26 H 0.05 3.12 6.10 -2.38 -0.01 3.10 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.96 7.74 -2.39 -0.02 1.94 16 32 H 0.06 2.14 6.33 -2.39 -0.02 2.12 16 33 H 0.07 2.87 7.27 -2.38 -0.02 2.85 16 34 H 0.06 2.40 7.32 -2.39 -0.02 2.38 16 35 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 36 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -65.33 301.83 5.19 -60.15 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 1.04 Total: 10.60 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 3.24 Total: -24.66 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -1.78 Total: -89.54 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.66 Total: -4.29 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -65.33 5.19 -60.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593083495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.251 kcal (2) G-P(sol) polarization free energy of solvation -65.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds