Wall clock time and date at job start Mon Mar 30 2020 07:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00243 * 2 1 4 4 H 1.48494 * 109.47209 * 86.93381 * 3 2 1 5 5 H 1.48495 * 109.47423 * 206.93656 * 3 2 1 6 6 H 1.48504 * 109.46797 * 326.93760 * 3 2 1 7 7 C 1.38811 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00425 * 20.00195 * 7 2 1 9 9 N 1.36941 * 119.99729 * 199.99019 * 7 2 1 10 10 C 1.46931 * 120.63043 * 29.27320 * 9 7 2 11 11 C 1.53193 * 108.77482 * 126.36606 * 10 9 7 12 12 C 1.53038 * 109.31310 * 54.63375 * 11 10 9 13 13 C 1.53048 * 109.53826 * 298.63266 * 12 11 10 14 14 C 1.46925 * 120.62891 * 208.98628 * 9 7 2 15 15 H 1.09008 * 109.58423 * 113.84851 * 14 9 7 16 16 C 1.53003 * 109.58803 * 353.42628 * 14 9 7 17 17 C 1.50697 * 109.47077 * 175.18569 * 16 14 9 18 18 C 1.38227 * 120.01432 * 98.89478 * 17 16 14 19 19 C 1.38224 * 120.02575 * 179.97438 * 18 17 16 20 20 C 1.38270 * 120.05113 * 0.02590 * 19 18 17 21 21 C 1.38176 * 120.02389 * 359.97438 * 20 19 18 22 22 C 1.38440 * 120.01543 * 278.61858 * 17 16 14 23 23 F 1.35106 * 120.02103 * 0.02562 * 22 17 16 24 24 H 0.97001 * 119.99594 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.58093 * 246.15150 * 10 9 7 26 26 H 1.08999 * 109.58434 * 6.42979 * 10 9 7 27 27 H 1.08995 * 109.49307 * 174.58386 * 11 10 9 28 28 H 1.08998 * 109.49510 * 294.68094 * 11 10 9 29 29 H 1.09000 * 109.46276 * 58.65372 * 12 11 10 30 30 H 1.09006 * 109.46041 * 178.63026 * 12 11 10 31 31 H 1.08996 * 109.49626 * 181.31561 * 13 12 11 32 32 H 1.08995 * 109.49575 * 301.38280 * 13 12 11 33 33 H 1.09005 * 109.46600 * 295.18410 * 16 14 9 34 34 H 1.08998 * 109.47280 * 55.18563 * 16 14 9 35 35 H 1.07999 * 119.98761 * 359.97438 * 18 17 16 36 36 H 1.07994 * 119.97314 * 179.97438 * 19 18 17 37 37 H 1.08002 * 119.98602 * 179.97438 * 20 19 18 38 38 H 1.08004 * 120.01066 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4330 2.0838 1.3980 5 1 3.5787 1.4223 -0.6342 6 1 1.4816 2.6331 -0.7638 7 6 2.0102 -1.2022 0.0005 8 1 1.5191 -2.1094 -0.3190 9 7 3.3178 -1.2377 0.4060 10 6 3.8208 -0.2762 1.3967 11 6 4.4828 -1.0490 2.5418 12 6 5.5537 -1.9813 1.9707 13 6 4.9014 -2.9892 1.0215 14 6 4.2427 -2.2420 -0.1367 15 1 5.0101 -1.7478 -0.7326 16 6 3.4698 -3.2324 -1.0100 17 6 4.4357 -4.1895 -1.6595 18 6 4.6330 -5.4461 -1.1186 19 6 5.5186 -6.3244 -1.7144 20 6 6.2084 -5.9470 -2.8518 21 6 6.0128 -4.6914 -3.3943 22 6 5.1216 -3.8127 -2.8015 23 9 4.9258 -2.5866 -3.3341 24 1 -0.4849 0.8401 -0.0004 25 1 4.5529 0.3815 0.9284 26 1 2.9921 0.3166 1.7840 27 1 4.9445 -0.3464 3.2355 28 1 3.7301 -1.6376 3.0664 29 1 6.2927 -1.3944 1.4252 30 1 6.0431 -2.5145 2.7858 31 1 5.6611 -3.6675 0.6332 32 1 4.1453 -3.5599 1.5605 33 1 2.7663 -3.7899 -0.3916 34 1 2.9240 -2.6881 -1.7808 35 1 4.0951 -5.7418 -0.2300 36 1 5.6724 -7.3058 -1.2909 37 1 6.9004 -6.6340 -3.3163 38 1 6.5520 -4.3966 -4.2825 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593083496.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:38 Heat of formation + Delta-G solvation = -8.708434 kcal Electronic energy + Delta-G solvation = -20414.680834 eV Core-core repulsion = 17364.595275 eV Total energy + Delta-G solvation = -3050.085559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.56669 -39.18321 -37.80949 -33.44162 -33.06145 -30.77983 -30.41627 -29.85084 -26.26654 -24.86539 -22.78213 -22.56372 -21.75439 -20.31218 -19.22428 -17.34652 -16.46761 -16.15679 -15.74800 -15.40156 -15.13301 -14.40895 -13.94790 -13.67662 -13.63805 -13.48870 -13.11188 -12.98097 -12.59348 -12.35496 -12.21223 -11.85086 -11.56733 -11.37572 -11.04222 -10.76204 -10.64030 -10.43618 -10.23000 -10.12424 -9.86204 -9.51899 -9.37549 -8.78325 -8.55733 -8.38561 -6.87835 -5.90801 -3.27167 1.29623 1.32996 3.36425 3.52672 3.57665 3.70798 4.47453 4.57876 4.75888 4.87505 4.96769 5.22212 5.28698 5.38012 5.44829 5.47498 5.53122 5.60554 5.79477 5.97305 6.05320 6.07356 6.12705 6.21739 6.24784 6.29873 6.39363 6.46920 6.48915 6.54723 6.58756 6.65181 6.76799 6.86378 6.89043 7.07484 7.12051 8.02180 8.38071 8.98674 9.77450 10.16596 11.24879 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.022615 B = 0.006884 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.802565 B = 4066.187814 C = 4584.594877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.026 3.974 3 Si 0.880 3.120 4 H -0.289 1.289 5 H -0.270 1.270 6 H -0.304 1.304 7 C -0.259 4.259 8 H 0.090 0.910 9 N -0.602 5.602 10 C 0.128 3.872 11 C -0.135 4.135 12 C -0.110 4.110 13 C -0.130 4.130 14 C 0.187 3.813 15 H 0.029 0.971 16 C -0.075 4.075 17 C -0.097 4.097 18 C -0.090 4.090 19 C -0.133 4.133 20 C -0.106 4.106 21 C -0.157 4.157 22 C 0.099 3.901 23 F -0.134 7.134 24 H 0.262 0.738 25 H 0.022 0.978 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.808 -10.722 -1.632 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.173 4.173 3 Si 0.710 3.290 4 H -0.217 1.217 5 H -0.195 1.195 6 H -0.232 1.232 7 C -0.387 4.387 8 H 0.107 0.893 9 N -0.327 5.327 10 C 0.002 3.998 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.169 4.169 14 C 0.081 3.919 15 H 0.046 0.954 16 C -0.112 4.112 17 C -0.098 4.098 18 C -0.108 4.108 19 C -0.151 4.151 20 C -0.124 4.124 21 C -0.176 4.176 22 C 0.080 3.920 23 F -0.112 7.112 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.626 -10.571 -1.679 16.552 hybrid contribution 0.436 1.261 -0.110 1.339 sum 13.062 -9.309 -1.789 16.139 Atomic orbital electron populations 1.69830 1.05715 1.26468 1.53224 1.25297 0.95169 0.97506 0.99353 0.86971 0.80188 0.84812 0.76979 1.21703 1.19529 1.23234 1.18902 0.84626 0.94681 1.40513 0.89263 1.44379 1.07997 1.35300 1.44988 1.21311 0.97128 0.91991 0.89322 1.22004 0.98119 0.98740 0.98566 1.21395 0.97603 0.97542 0.98231 1.21994 0.99335 0.97726 0.97879 1.20236 0.91151 0.88993 0.91558 0.95383 1.20752 0.95567 0.95226 0.99699 1.20286 0.98585 0.96487 0.94466 1.21017 0.97840 0.92349 0.99576 1.21150 0.97591 0.99872 0.96500 1.20890 0.99780 0.95418 0.96347 1.21101 1.00028 0.94662 1.01805 1.17663 0.98646 0.81351 0.94327 1.91528 1.93871 1.40442 1.85382 0.92854 0.95999 0.91057 0.93100 0.91817 0.92933 0.93271 0.92842 0.91973 0.90179 0.89107 0.85159 0.85794 0.85630 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.93 13.97 55.49 0.78 -27.15 16 2 C 0.03 0.74 5.23 -17.43 -0.09 0.65 16 3 Si 0.88 22.87 24.37 -169.99 -4.14 18.73 16 4 H -0.29 -7.26 6.66 56.52 0.38 -6.88 16 5 H -0.27 -7.01 6.65 56.52 0.38 -6.63 16 6 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 7 C -0.26 -7.14 8.97 -15.06 -0.14 -7.27 16 8 H 0.09 2.57 6.46 -52.49 -0.34 2.23 16 9 N -0.60 -14.41 2.75 -165.02 -0.45 -14.87 16 10 C 0.13 2.87 4.22 -3.71 -0.02 2.85 16 11 C -0.14 -2.47 6.08 -26.61 -0.16 -2.63 16 12 C -0.11 -1.80 5.89 -26.69 -0.16 -1.96 16 13 C -0.13 -2.21 4.90 -26.83 -0.13 -2.34 16 14 C 0.19 3.77 2.93 -67.82 -0.20 3.57 16 15 H 0.03 0.61 8.14 -51.92 -0.42 0.18 16 16 C -0.08 -1.42 3.31 -27.88 -0.09 -1.51 16 17 C -0.10 -1.53 4.47 -104.55 -0.47 -1.99 16 18 C -0.09 -1.16 8.85 -39.59 -0.35 -1.51 16 19 C -0.13 -1.45 10.04 -39.57 -0.40 -1.84 16 20 C -0.11 -1.13 10.04 -39.59 -0.40 -1.53 16 21 C -0.16 -1.98 10.03 -39.52 -0.40 -2.38 16 22 C 0.10 1.57 7.25 -39.42 -0.29 1.28 16 23 F -0.13 -2.42 16.64 2.25 0.04 -2.38 16 24 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.02 0.50 7.05 -51.93 -0.37 0.13 16 26 H 0.07 1.74 4.69 -51.93 -0.24 1.49 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.81 7.08 -51.93 -0.37 0.44 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.51 7.59 -51.93 -0.39 1.12 16 34 H 0.09 1.96 7.08 -51.93 -0.37 1.59 16 35 H 0.13 1.52 8.04 -52.49 -0.42 1.10 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 299.69 15.07 4.52 4.52 Total: -1.00 -30.65 299.69 -8.04 -38.69 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.49 Total: -0.92 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -3.28 Total: -16.61 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.32 Total: -42.02 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.14 Total: 18.73 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.65 -8.04 -38.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593083496.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.980 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds