Wall clock time and date at job start Mon Mar 30 2020 07:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00243 * 2 1 4 4 H 1.48494 * 109.47209 * 86.93381 * 3 2 1 5 5 H 1.48495 * 109.47423 * 206.93656 * 3 2 1 6 6 H 1.48504 * 109.46797 * 326.93760 * 3 2 1 7 7 C 1.38811 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00425 * 20.00195 * 7 2 1 9 9 N 1.36941 * 119.99729 * 199.99019 * 7 2 1 10 10 C 1.46931 * 120.63043 * 29.27320 * 9 7 2 11 11 C 1.53193 * 108.77482 * 126.36606 * 10 9 7 12 12 C 1.53038 * 109.31310 * 54.63375 * 11 10 9 13 13 C 1.53048 * 109.53826 * 298.63266 * 12 11 10 14 14 C 1.46925 * 120.62891 * 208.98628 * 9 7 2 15 15 H 1.09008 * 109.58423 * 113.84851 * 14 9 7 16 16 C 1.53003 * 109.58803 * 353.42628 * 14 9 7 17 17 C 1.50697 * 109.47077 * 175.18569 * 16 14 9 18 18 C 1.38227 * 120.01432 * 98.89478 * 17 16 14 19 19 C 1.38224 * 120.02575 * 179.97438 * 18 17 16 20 20 C 1.38270 * 120.05113 * 0.02590 * 19 18 17 21 21 C 1.38176 * 120.02389 * 359.97438 * 20 19 18 22 22 C 1.38440 * 120.01543 * 278.61858 * 17 16 14 23 23 F 1.35106 * 120.02103 * 0.02562 * 22 17 16 24 24 H 0.97001 * 119.99594 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.58093 * 246.15150 * 10 9 7 26 26 H 1.08999 * 109.58434 * 6.42979 * 10 9 7 27 27 H 1.08995 * 109.49307 * 174.58386 * 11 10 9 28 28 H 1.08998 * 109.49510 * 294.68094 * 11 10 9 29 29 H 1.09000 * 109.46276 * 58.65372 * 12 11 10 30 30 H 1.09006 * 109.46041 * 178.63026 * 12 11 10 31 31 H 1.08996 * 109.49626 * 181.31561 * 13 12 11 32 32 H 1.08995 * 109.49575 * 301.38280 * 13 12 11 33 33 H 1.09005 * 109.46600 * 295.18410 * 16 14 9 34 34 H 1.08998 * 109.47280 * 55.18563 * 16 14 9 35 35 H 1.07999 * 119.98761 * 359.97438 * 18 17 16 36 36 H 1.07994 * 119.97314 * 179.97438 * 19 18 17 37 37 H 1.08002 * 119.98602 * 179.97438 * 20 19 18 38 38 H 1.08004 * 120.01066 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4330 2.0838 1.3980 5 1 3.5787 1.4223 -0.6342 6 1 1.4816 2.6331 -0.7638 7 6 2.0102 -1.2022 0.0005 8 1 1.5191 -2.1094 -0.3190 9 7 3.3178 -1.2377 0.4060 10 6 3.8208 -0.2762 1.3967 11 6 4.4828 -1.0490 2.5418 12 6 5.5537 -1.9813 1.9707 13 6 4.9014 -2.9892 1.0215 14 6 4.2427 -2.2420 -0.1367 15 1 5.0101 -1.7478 -0.7326 16 6 3.4698 -3.2324 -1.0100 17 6 4.4357 -4.1895 -1.6595 18 6 4.6330 -5.4461 -1.1186 19 6 5.5186 -6.3244 -1.7144 20 6 6.2084 -5.9470 -2.8518 21 6 6.0128 -4.6914 -3.3943 22 6 5.1216 -3.8127 -2.8015 23 9 4.9258 -2.5866 -3.3341 24 1 -0.4849 0.8401 -0.0004 25 1 4.5529 0.3815 0.9284 26 1 2.9921 0.3166 1.7840 27 1 4.9445 -0.3464 3.2355 28 1 3.7301 -1.6376 3.0664 29 1 6.2927 -1.3944 1.4252 30 1 6.0431 -2.5145 2.7858 31 1 5.6611 -3.6675 0.6332 32 1 4.1453 -3.5599 1.5605 33 1 2.7663 -3.7899 -0.3916 34 1 2.9240 -2.6881 -1.7808 35 1 4.0951 -5.7418 -0.2300 36 1 5.6724 -7.3058 -1.2909 37 1 6.9004 -6.6340 -3.3163 38 1 6.5520 -4.3966 -4.2825 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593083496.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:38 Heat of formation + Delta-G solvation = -26.222249 kcal Electronic energy + Delta-G solvation = -20415.440290 eV Core-core repulsion = 17364.595275 eV Total energy + Delta-G solvation = -3050.845015 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.83561 -40.42235 -39.24594 -35.00042 -34.77940 -32.69401 -31.49519 -31.12770 -27.74453 -26.69969 -24.38215 -23.63923 -23.13588 -21.69223 -20.89473 -18.63417 -18.22613 -17.45952 -17.26172 -16.83927 -16.46221 -15.92375 -15.38479 -15.22108 -15.09505 -14.94928 -14.73273 -14.29843 -14.14185 -13.72948 -13.67778 -13.35584 -13.01815 -12.87962 -12.57666 -12.35187 -12.15334 -12.06124 -11.76886 -11.62509 -11.60833 -11.24905 -11.19303 -10.64834 -9.80286 -9.50532 -8.88528 -8.16008 -5.47337 0.27147 0.33972 1.24881 1.36927 1.45901 2.40528 2.71275 3.04492 3.25409 3.42427 3.83833 3.91849 3.99391 4.05540 4.11948 4.18922 4.29298 4.43191 4.47569 4.52498 4.54999 4.65026 4.77661 4.87399 5.00662 5.02730 5.11605 5.17859 5.20606 5.24769 5.27007 5.31270 5.36342 5.50993 5.56240 5.62161 5.90577 6.04387 6.16626 6.93065 7.64088 8.05740 9.03680 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.022615 B = 0.006884 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.802565 B = 4066.187814 C = 4584.594877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.033 4.033 3 Si 0.937 3.063 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.312 1.312 7 C -0.238 4.238 8 H 0.065 0.935 9 N -0.617 5.617 10 C 0.118 3.882 11 C -0.128 4.128 12 C -0.108 4.108 13 C -0.119 4.119 14 C 0.181 3.819 15 H 0.014 0.986 16 C -0.062 4.062 17 C -0.118 4.118 18 C -0.092 4.092 19 C -0.119 4.119 20 C -0.092 4.092 21 C -0.156 4.156 22 C 0.063 3.937 23 F -0.160 7.160 24 H 0.260 0.740 25 H 0.022 0.978 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.142 0.858 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.249 -13.088 -0.779 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.228 4.228 3 Si 0.767 3.233 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.241 1.241 7 C -0.367 4.367 8 H 0.082 0.918 9 N -0.342 5.342 10 C -0.006 4.006 11 C -0.167 4.167 12 C -0.145 4.145 13 C -0.157 4.157 14 C 0.076 3.924 15 H 0.032 0.968 16 C -0.100 4.100 17 C -0.120 4.120 18 C -0.110 4.110 19 C -0.137 4.137 20 C -0.110 4.110 21 C -0.175 4.175 22 C 0.044 3.956 23 F -0.139 7.139 24 H 0.069 0.931 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.159 0.841 36 H 0.180 0.820 37 H 0.184 0.816 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 16.117 -12.949 -0.810 20.690 hybrid contribution -0.568 1.827 -0.436 1.963 sum 15.549 -11.122 -1.246 19.158 Atomic orbital electron populations 1.69940 1.07103 1.26893 1.56363 1.25852 0.95761 1.00431 1.00715 0.86028 0.78493 0.81244 0.77509 1.19990 1.19748 1.24058 1.18892 0.86153 0.93643 1.38039 0.91762 1.44594 1.07318 1.36423 1.45852 1.21394 0.96537 0.92209 0.90488 1.21919 0.98454 0.99175 0.97134 1.21420 0.96910 0.97129 0.99039 1.21861 0.99609 0.97829 0.96432 1.20444 0.90314 0.88558 0.93050 0.96785 1.20449 0.95998 0.95352 0.98218 1.20050 0.99224 0.97264 0.95425 1.21195 0.98435 0.91313 1.00069 1.21592 0.95595 1.00695 0.95835 1.21404 0.99221 0.94733 0.95638 1.21393 0.98985 0.94902 1.02183 1.18106 1.00747 0.81346 0.95369 1.91454 1.94322 1.42259 1.85850 0.93122 0.96010 0.93389 0.90273 0.92488 0.92606 0.89699 0.90376 0.92183 0.91073 0.93572 0.84065 0.81971 0.81574 0.83485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.50 13.97 21.65 0.30 -61.20 16 2 C -0.03 -2.00 5.23 84.86 0.44 -1.56 16 3 Si 0.94 49.02 24.37 68.60 1.67 50.69 16 4 H -0.27 -13.42 6.66 99.48 0.66 -12.76 16 5 H -0.27 -14.11 6.65 99.48 0.66 -13.45 16 6 H -0.31 -16.52 7.11 99.48 0.71 -15.81 16 7 C -0.24 -13.73 8.97 84.03 0.75 -12.98 16 8 H 0.06 3.97 6.46 -2.91 -0.02 3.95 16 9 N -0.62 -30.20 2.75 -676.01 -1.86 -32.06 16 10 C 0.12 5.27 4.22 86.36 0.36 5.63 16 11 C -0.13 -4.38 6.08 30.67 0.19 -4.19 16 12 C -0.11 -3.15 5.89 30.62 0.18 -2.97 16 13 C -0.12 -3.78 4.90 30.53 0.15 -3.63 16 14 C 0.18 7.43 2.93 44.83 0.13 7.56 16 15 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 16 C -0.06 -2.48 3.31 29.85 0.10 -2.38 16 17 C -0.12 -3.72 4.47 -19.82 -0.09 -3.81 16 18 C -0.09 -2.16 8.85 22.26 0.20 -1.96 16 19 C -0.12 -2.03 10.04 22.27 0.22 -1.80 16 20 C -0.09 -1.53 10.04 22.26 0.22 -1.31 16 21 C -0.16 -3.56 10.03 22.31 0.22 -3.33 16 22 C 0.06 2.00 7.25 22.37 0.16 2.16 16 23 F -0.16 -6.11 16.64 44.97 0.75 -5.36 16 24 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 25 H 0.02 0.97 7.05 -2.39 -0.02 0.95 16 26 H 0.05 2.34 4.69 -2.39 -0.01 2.33 16 27 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.08 2.13 7.08 -2.39 -0.02 2.11 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 2.84 7.59 -2.38 -0.02 2.83 16 34 H 0.05 2.18 7.08 -2.39 -0.02 2.16 16 35 H 0.14 2.94 8.04 -2.91 -0.02 2.92 16 36 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 37 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -71.04 299.69 5.07 -65.97 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 0.95 Total: 6.52 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 3.25 Total: -24.57 kcal Atomic # 7 Polarization: -91.70 SS G_CDS: -1.55 Total: -93.26 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.75 Total: -5.36 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 1.67 Total: 50.69 kcal Total: -71.04 5.07 -65.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593083496.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.753 kcal (2) G-P(sol) polarization free energy of solvation -71.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds