Wall clock time and date at job start Mon Mar 30 2020 07:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35902 * 117.00153 * 2 1 4 4 C 1.38811 * 120.01893 * 359.97438 * 3 2 1 5 5 C 1.38164 * 120.08388 * 179.97438 * 4 3 2 6 6 C 1.38165 * 120.12418 * 0.03447 * 5 4 3 7 7 C 1.38890 * 120.04281 * 359.96313 * 6 5 4 8 8 N 1.39919 * 120.04555 * 180.02562 * 7 6 5 9 9 C 1.34772 * 120.00062 * 213.33874 * 8 7 6 10 10 O 1.21286 * 120.00277 * 5.27466 * 9 8 7 11 11 C 1.50705 * 120.00086 * 185.27755 * 9 8 7 12 12 C 1.52996 * 109.47426 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47397 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47514 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99928 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00404 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99520 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00196 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46884 * 59.99575 * 18 16 14 20 20 H 1.48494 * 109.47293 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46878 * 300.00075 * 18 16 14 22 22 C 1.38579 * 120.02028 * 179.97438 * 3 2 1 23 23 H 1.09000 * 109.47351 * 59.99449 * 1 2 3 24 24 H 1.08995 * 109.47200 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46985 * 299.99451 * 1 2 3 26 26 H 1.08002 * 119.95489 * 0.03205 * 4 3 2 27 27 H 1.07999 * 119.93825 * 180.02562 * 5 4 3 28 28 H 1.08005 * 119.98233 * 179.97438 * 6 5 4 29 29 H 0.97003 * 120.00110 * 33.33613 * 8 7 6 30 30 H 1.09004 * 109.47033 * 300.00379 * 11 9 8 31 31 H 1.09002 * 109.47148 * 59.99577 * 11 9 8 32 32 H 1.09004 * 109.47362 * 300.00225 * 12 11 9 33 33 H 1.09011 * 109.47072 * 59.99950 * 12 11 9 34 34 H 1.09004 * 109.47350 * 300.00602 * 13 12 11 35 35 H 1.09002 * 109.46861 * 59.99818 * 13 12 11 36 36 H 0.97004 * 119.99760 * 180.02562 * 17 16 14 37 37 H 1.08003 * 120.06067 * 0.26924 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2905 2.3753 -0.0005 5 6 1.9163 3.6071 0.0000 6 6 3.2959 3.6839 0.0003 7 6 4.0570 2.5221 0.0009 8 7 5.4540 2.5998 0.0018 9 6 6.1814 1.6637 -0.6391 10 8 5.6260 0.8088 -1.2961 11 6 7.6851 1.6789 -0.5393 12 6 8.2620 0.5183 -1.3522 13 6 9.7886 0.5342 -1.2515 14 6 10.3569 -0.6086 -2.0527 15 1 9.6954 -1.2790 -2.5813 16 6 11.7213 -0.7984 -2.1109 17 7 12.5268 0.0182 -1.4677 18 14 12.4258 -2.2147 -3.1047 19 1 12.0225 -2.0704 -4.5266 20 1 13.9074 -2.1993 -3.0068 21 1 11.9072 -3.4999 -2.5711 22 6 3.4299 1.2839 0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 0.2119 2.3183 -0.0004 27 1 1.3262 4.5115 0.0000 28 1 3.7827 4.6480 0.0003 29 1 5.8990 3.3276 0.4637 30 1 8.0657 2.6222 -0.9313 31 1 7.9811 1.5735 0.5044 32 1 7.8814 -0.4248 -0.9598 33 1 7.9660 0.6233 -2.3961 34 1 10.1689 1.4773 -1.6442 35 1 10.0849 0.4295 -0.2078 36 1 13.4867 -0.1151 -1.5089 37 1 4.0194 0.3789 -0.0034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593935496.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:44 Heat of formation + Delta-G solvation = -62.764242 kcal Electronic energy + Delta-G solvation = -18656.138473 eV Core-core repulsion = 15591.336088 eV Total energy + Delta-G solvation = -3064.802384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.68205 -39.52346 -37.46592 -34.54534 -34.19644 -32.09089 -30.80849 -29.63189 -27.78605 -27.30995 -24.19905 -22.98313 -22.02799 -20.55104 -19.81831 -18.59649 -17.05794 -16.42310 -16.11044 -16.06205 -15.89639 -15.76077 -15.34475 -14.43069 -13.98086 -13.87626 -13.49606 -13.29601 -12.80983 -12.53590 -12.26993 -11.99082 -11.83062 -11.52578 -11.36930 -11.20183 -10.78430 -10.64376 -10.54953 -10.29854 -9.74028 -9.67998 -9.29759 -9.04493 -8.48940 -8.31425 -8.15725 -5.97309 -3.98786 1.14449 1.31922 2.75796 2.91308 3.30451 3.37523 3.40811 3.44911 3.69918 4.49865 4.62314 4.84917 4.89353 4.91543 4.99712 5.03598 5.21649 5.24057 5.38829 5.41278 5.63135 5.65248 5.75561 6.09735 6.13283 6.19128 6.29620 6.31746 6.69639 6.76782 6.90125 7.14398 7.27575 7.40933 7.70286 7.82751 8.03027 8.26340 8.46875 9.08033 9.65218 11.14197 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.034826 B = 0.003179 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.813593 B = 8806.723884 C = 9481.761115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.146 3.854 4 C -0.231 4.231 5 C -0.062 4.062 6 C -0.188 4.188 7 C 0.195 3.805 8 N -0.682 5.682 9 C 0.511 3.489 10 O -0.511 6.511 11 C -0.137 4.137 12 C -0.096 4.096 13 C 0.021 3.979 14 C -0.519 4.519 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.158 4.158 23 H 0.055 0.945 24 H 0.099 0.901 25 H 0.054 0.946 26 H 0.126 0.874 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.413 0.587 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.915 8.710 6.294 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.100 3.900 4 C -0.251 4.251 5 C -0.081 4.081 6 C -0.209 4.209 7 C 0.099 3.901 8 N -0.328 5.328 9 C 0.300 3.700 10 O -0.385 6.385 11 C -0.177 4.177 12 C -0.135 4.135 13 C -0.016 4.016 14 C -0.558 4.558 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.179 4.179 23 H 0.073 0.927 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.249 0.751 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -22.947 7.882 5.841 24.956 hybrid contribution 0.421 -0.144 -0.288 0.530 sum -22.526 7.738 5.553 24.457 Atomic orbital electron populations 1.23049 0.78497 1.03903 1.01226 1.86112 1.21235 1.26890 1.88522 1.18777 0.91781 0.84171 0.95279 1.21156 0.99887 0.92331 1.11710 1.20657 0.93753 0.96964 0.96702 1.20808 0.93987 0.96990 1.09084 1.17447 0.83218 0.92973 0.96428 1.43854 1.04010 1.30247 1.54724 1.21569 0.91051 0.80028 0.77327 1.90717 1.73166 1.36106 1.38464 1.21890 0.88245 1.03631 1.03910 1.21480 0.98830 0.94739 0.98402 1.19122 0.88091 0.97201 0.97189 1.21233 0.91624 1.12663 1.30241 0.92601 1.25015 0.97249 0.96435 0.95773 1.69950 1.03396 1.37547 1.42872 0.86646 0.77700 0.82870 0.80737 1.20219 1.21332 1.20201 1.20362 0.91703 0.98442 1.07406 0.92668 0.88277 0.92710 0.85604 0.85531 0.85554 0.75113 0.88957 0.88830 0.92547 0.92565 0.96562 0.96547 0.92997 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.99 10.49 -19.43 -0.20 -4.19 16 3 C 0.15 1.92 6.68 -39.24 -0.26 1.65 16 4 C -0.23 -2.40 9.04 -39.40 -0.36 -2.76 16 5 C -0.06 -0.59 10.03 -39.64 -0.40 -0.99 16 6 C -0.19 -1.97 9.96 -39.37 -0.39 -2.36 16 7 C 0.19 2.55 6.28 -83.72 -0.53 2.03 16 8 N -0.68 -8.42 5.34 -9.88 -0.05 -8.47 16 9 C 0.51 8.17 7.57 -10.98 -0.08 8.09 16 10 O -0.51 -10.21 13.66 5.55 0.08 -10.13 16 11 C -0.14 -2.19 5.70 -27.88 -0.16 -2.35 16 12 C -0.10 -2.06 4.44 -26.73 -0.12 -2.18 16 13 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 14 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 15 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 18 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C -0.16 -2.36 8.60 -39.25 -0.34 -2.70 16 23 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 24 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.33 7.66 -51.93 -0.40 -0.06 16 26 H 0.13 0.98 6.29 -52.49 -0.33 0.65 16 27 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 28 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 29 H 0.41 3.55 8.82 -40.82 -0.36 3.19 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 33 H 0.06 1.25 8.10 -51.92 -0.42 0.83 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.14 2.48 6.40 -52.48 -0.34 2.15 16 LS Contribution 317.21 15.07 4.78 4.78 Total: -1.00 -34.55 317.21 -7.04 -41.59 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -5.16 Total: -0.49 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -2.19 Total: -13.78 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.68 Total: -34.85 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.13 Total: -14.32 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.55 -7.04 -41.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593935496.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.175 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds