Wall clock time and date at job start Mon Mar 30 2020 07:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35902 * 117.00153 * 2 1 4 4 C 1.38811 * 120.01893 * 359.97438 * 3 2 1 5 5 C 1.38164 * 120.08388 * 179.97438 * 4 3 2 6 6 C 1.38165 * 120.12418 * 0.03447 * 5 4 3 7 7 C 1.38890 * 120.04281 * 359.96313 * 6 5 4 8 8 N 1.39919 * 120.04555 * 180.02562 * 7 6 5 9 9 C 1.34772 * 120.00062 * 213.33874 * 8 7 6 10 10 O 1.21286 * 120.00277 * 5.27466 * 9 8 7 11 11 C 1.50705 * 120.00086 * 185.27755 * 9 8 7 12 12 C 1.52996 * 109.47426 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47397 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47514 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99928 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00404 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99520 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00196 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46884 * 59.99575 * 18 16 14 20 20 H 1.48494 * 109.47293 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46878 * 300.00075 * 18 16 14 22 22 C 1.38579 * 120.02028 * 179.97438 * 3 2 1 23 23 H 1.09000 * 109.47351 * 59.99449 * 1 2 3 24 24 H 1.08995 * 109.47200 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46985 * 299.99451 * 1 2 3 26 26 H 1.08002 * 119.95489 * 0.03205 * 4 3 2 27 27 H 1.07999 * 119.93825 * 180.02562 * 5 4 3 28 28 H 1.08005 * 119.98233 * 179.97438 * 6 5 4 29 29 H 0.97003 * 120.00110 * 33.33613 * 8 7 6 30 30 H 1.09004 * 109.47033 * 300.00379 * 11 9 8 31 31 H 1.09002 * 109.47148 * 59.99577 * 11 9 8 32 32 H 1.09004 * 109.47362 * 300.00225 * 12 11 9 33 33 H 1.09011 * 109.47072 * 59.99950 * 12 11 9 34 34 H 1.09004 * 109.47350 * 300.00602 * 13 12 11 35 35 H 1.09002 * 109.46861 * 59.99818 * 13 12 11 36 36 H 0.97004 * 119.99760 * 180.02562 * 17 16 14 37 37 H 1.08003 * 120.06067 * 0.26924 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2905 2.3753 -0.0005 5 6 1.9163 3.6071 0.0000 6 6 3.2959 3.6839 0.0003 7 6 4.0570 2.5221 0.0009 8 7 5.4540 2.5998 0.0018 9 6 6.1814 1.6637 -0.6391 10 8 5.6260 0.8088 -1.2961 11 6 7.6851 1.6789 -0.5393 12 6 8.2620 0.5183 -1.3522 13 6 9.7886 0.5342 -1.2515 14 6 10.3569 -0.6086 -2.0527 15 1 9.6954 -1.2790 -2.5813 16 6 11.7213 -0.7984 -2.1109 17 7 12.5268 0.0182 -1.4677 18 14 12.4258 -2.2147 -3.1047 19 1 12.0225 -2.0704 -4.5266 20 1 13.9074 -2.1993 -3.0068 21 1 11.9072 -3.4999 -2.5711 22 6 3.4299 1.2839 0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 0.2119 2.3183 -0.0004 27 1 1.3262 4.5115 0.0000 28 1 3.7827 4.6480 0.0003 29 1 5.8990 3.3276 0.4637 30 1 8.0657 2.6222 -0.9313 31 1 7.9811 1.5735 0.5044 32 1 7.8814 -0.4248 -0.9598 33 1 7.9660 0.6233 -2.3961 34 1 10.1689 1.4773 -1.6442 35 1 10.0849 0.4295 -0.2078 36 1 13.4867 -0.1151 -1.5089 37 1 4.0194 0.3789 -0.0034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593935496.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:44 Heat of formation + Delta-G solvation = -85.894359 kcal Electronic energy + Delta-G solvation = -18657.141470 eV Core-core repulsion = 15591.336088 eV Total energy + Delta-G solvation = -3065.805382 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.71305 -40.54934 -38.43122 -36.17259 -35.55112 -34.05843 -31.70884 -30.77327 -29.33072 -28.07465 -25.98724 -24.07140 -23.09674 -22.03810 -21.22645 -19.52988 -18.60181 -17.98538 -17.25967 -17.05098 -16.80323 -16.63204 -16.58440 -16.44536 -15.21822 -15.15135 -14.48861 -14.45546 -14.25133 -13.82219 -13.70004 -13.25330 -13.11153 -12.72798 -12.62474 -12.53225 -12.44337 -12.26006 -12.01895 -11.57089 -11.46867 -11.30107 -11.24284 -10.79405 -10.54256 -9.45180 -9.04377 -8.20708 -6.30530 0.22236 0.45194 1.39224 1.42034 1.50163 1.56640 1.95164 2.40579 2.44997 2.81305 3.12346 3.76257 3.89593 4.10301 4.19039 4.24174 4.24474 4.28937 4.39500 4.45701 4.56955 4.67339 4.72861 4.84723 4.94924 5.08071 5.18150 5.27783 5.32130 5.34544 5.47881 5.53356 5.74960 5.85202 5.87712 6.27034 6.40965 6.46324 6.84657 7.12125 7.38011 8.90627 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.034826 B = 0.003179 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.813593 B = 8806.723884 C = 9481.761115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.346 6.346 3 C 0.128 3.872 4 C -0.225 4.225 5 C -0.055 4.055 6 C -0.181 4.181 7 C 0.173 3.827 8 N -0.662 5.662 9 C 0.514 3.486 10 O -0.560 6.560 11 C -0.126 4.126 12 C -0.084 4.084 13 C 0.027 3.973 14 C -0.550 4.550 15 H 0.050 0.950 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.961 3.039 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.194 4.194 23 H 0.067 0.933 24 H 0.113 0.887 25 H 0.072 0.928 26 H 0.156 0.844 27 H 0.168 0.832 28 H 0.157 0.843 29 H 0.432 0.568 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.039 0.961 33 H 0.041 0.959 34 H 0.004 0.996 35 H 0.002 0.998 36 H 0.265 0.735 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.495 10.478 6.500 27.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.260 6.260 3 C 0.083 3.917 4 C -0.244 4.244 5 C -0.073 4.073 6 C -0.201 4.201 7 C 0.078 3.922 8 N -0.309 5.309 9 C 0.304 3.696 10 O -0.437 6.437 11 C -0.166 4.166 12 C -0.123 4.123 13 C -0.010 4.010 14 C -0.588 4.588 15 H 0.068 0.932 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.785 3.215 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.195 1.195 22 C -0.216 4.216 23 H 0.085 0.915 24 H 0.132 0.868 25 H 0.091 0.909 26 H 0.173 0.827 27 H 0.185 0.815 28 H 0.175 0.825 29 H 0.272 0.728 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.022 0.978 35 H 0.021 0.979 36 H 0.074 0.926 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -24.548 9.693 6.079 27.083 hybrid contribution 0.805 -0.665 -0.314 1.091 sum -23.742 9.027 5.765 26.046 Atomic orbital electron populations 1.23366 0.76054 1.05480 1.02615 1.86069 1.23914 1.27392 1.88652 1.18966 0.91459 0.85393 0.95929 1.21527 1.01274 0.91585 1.10006 1.21188 0.93654 0.98033 0.94451 1.21173 0.94510 0.97010 1.07416 1.17661 0.83248 0.93415 0.97834 1.43524 1.04054 1.29668 1.53684 1.21420 0.91002 0.80048 0.77129 1.90711 1.73870 1.38208 1.40907 1.21708 0.88377 1.02292 1.04219 1.21187 0.96050 0.96493 0.98529 1.19004 0.90798 0.95595 0.95615 1.21674 0.92343 1.13778 1.31028 0.93175 1.25887 0.97561 0.99159 0.96775 1.70051 1.03826 1.39110 1.43873 0.85573 0.77234 0.79448 0.79246 1.19454 1.20262 1.19511 1.20317 0.92835 0.98036 1.10375 0.91469 0.86849 0.90923 0.82684 0.81487 0.82496 0.72818 0.86441 0.86726 0.94218 0.94027 0.97789 0.97930 0.92615 0.87627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.35 -8.98 10.49 -92.44 -0.97 -9.95 16 3 C 0.13 3.38 6.68 22.49 0.15 3.53 16 4 C -0.22 -4.08 9.04 22.39 0.20 -3.88 16 5 C -0.05 -0.83 10.03 22.23 0.22 -0.60 16 6 C -0.18 -3.23 9.96 22.41 0.22 -3.01 16 7 C 0.17 4.43 6.28 38.14 0.24 4.67 16 8 N -0.66 -15.82 5.34 -303.55 -1.62 -17.44 16 9 C 0.51 16.71 7.57 87.66 0.66 17.37 16 10 O -0.56 -23.58 13.66 -3.05 -0.04 -23.63 16 11 C -0.13 -4.02 5.70 29.85 0.17 -3.85 16 12 C -0.08 -3.73 4.44 30.59 0.14 -3.59 16 13 C 0.03 1.43 4.97 29.85 0.15 1.58 16 14 C -0.55 -32.65 9.11 25.60 0.23 -32.42 16 15 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 16 C 0.00 0.25 5.46 84.66 0.46 0.71 16 17 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 18 Si 0.96 45.56 29.54 68.60 2.03 47.58 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 22 C -0.19 -6.08 8.60 22.49 0.19 -5.89 16 23 H 0.07 0.75 7.66 -2.39 -0.02 0.74 16 24 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 26 H 0.16 1.82 6.29 -2.91 -0.02 1.80 16 27 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 28 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 29 H 0.43 6.52 8.82 -92.71 -0.82 5.70 16 30 H 0.12 3.16 8.14 -2.38 -0.02 3.14 16 31 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.04 1.85 8.10 -2.38 -0.02 1.83 16 33 H 0.04 1.92 8.10 -2.38 -0.02 1.90 16 34 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 35 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 36 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.11 4.04 6.40 -2.91 -0.02 4.02 16 Total: -1.00 -78.46 317.21 4.09 -74.37 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.25 Total: 9.33 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 4.16 Total: -24.01 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -1.34 Total: -73.70 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.01 Total: -33.58 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -78.46 4.09 -74.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593935496.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.522 kcal (2) G-P(sol) polarization free energy of solvation -78.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds