Wall clock time and date at job start Mon Mar 30 2020 07:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38612 * 120.40810 * 2 1 4 4 C 1.38611 * 118.53503 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.40596 * 179.97438 * 4 3 2 6 6 N 1.32272 * 119.18720 * 359.97438 * 4 3 2 7 7 C 1.32402 * 120.74775 * 0.02562 * 6 4 3 8 8 N 1.38942 * 119.20075 * 179.97438 * 7 6 4 9 9 C 1.34784 * 119.99824 * 179.97438 * 8 7 6 10 10 O 1.21261 * 119.99715 * 359.72774 * 9 8 7 11 11 C 1.50695 * 119.99635 * 179.97438 * 9 8 7 12 12 C 1.53002 * 109.47004 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47542 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.47478 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99866 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99925 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00389 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47361 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47609 * 119.99854 * 18 16 14 21 21 H 1.48501 * 109.47072 * 239.99899 * 18 16 14 22 22 N 1.32278 * 120.40468 * 180.28058 * 2 1 3 23 23 H 1.09006 * 109.46562 * 89.99900 * 1 2 3 24 24 H 1.08999 * 109.46859 * 209.99760 * 1 2 3 25 25 H 1.08999 * 109.46868 * 330.00172 * 1 2 3 26 26 H 1.08005 * 120.73157 * 0.04594 * 3 2 1 27 27 H 1.08995 * 109.47117 * 270.02219 * 5 4 3 28 28 H 1.09002 * 109.46881 * 30.02173 * 5 4 3 29 29 H 1.09002 * 109.46969 * 150.01763 * 5 4 3 30 30 H 0.96999 * 120.00132 * 359.97438 * 8 7 6 31 31 H 1.09005 * 109.47403 * 300.00056 * 11 9 8 32 32 H 1.09002 * 109.47422 * 60.00295 * 11 9 8 33 33 H 1.08997 * 109.47244 * 300.00535 * 12 11 9 34 34 H 1.09002 * 109.46787 * 59.99910 * 12 11 9 35 35 H 1.08997 * 109.47365 * 300.00556 * 13 12 11 36 36 H 1.09004 * 109.46747 * 59.99765 * 13 12 11 37 37 H 0.96998 * 120.00132 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2087 1.1954 0.0000 4 6 3.5940 1.1501 -0.0005 5 6 4.3989 2.4243 -0.0011 6 7 4.2010 -0.0251 -0.0005 7 6 3.5006 -1.1487 -0.0005 8 7 4.1712 -2.3655 -0.0010 9 6 3.4742 -3.5192 -0.0005 10 8 2.2619 -3.4950 0.0054 11 6 4.2016 -4.8389 -0.0017 12 6 3.1845 -5.9819 -0.0001 13 6 3.9229 -7.3218 -0.0019 14 6 2.9211 -8.4476 0.0002 15 1 1.8634 -8.2291 0.0023 16 6 3.3547 -9.7564 -0.0003 17 7 4.6427 -10.0224 -0.0033 18 14 2.1129 -11.1518 0.0016 19 1 0.7379 -10.5908 0.0043 20 1 2.3047 -11.9870 -1.2111 21 1 2.3086 -11.9869 1.2139 22 7 2.1765 -1.1408 -0.0056 23 1 -0.3633 0.0000 -1.0278 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6874 2.1414 0.0007 27 1 4.5922 2.7315 -1.0289 28 1 3.8408 3.2068 0.5131 29 1 5.3457 2.2562 0.5121 30 1 5.1410 -2.3848 -0.0018 31 1 4.8261 -4.9089 -0.8924 32 1 4.8281 -4.9094 0.8876 33 1 2.5604 -5.9117 0.8908 34 1 2.5577 -5.9116 -0.8891 35 1 4.5467 -7.3918 -0.8930 36 1 4.5500 -7.3923 0.8869 37 1 4.9477 -10.9431 -0.0041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593952317.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:42 Heat of formation + Delta-G solvation = 3.033676 kcal Electronic energy + Delta-G solvation = -18732.120016 eV Core-core repulsion = 15702.463594 eV Total energy + Delta-G solvation = -3029.656421 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.41232 -39.41046 -35.34998 -34.92044 -34.17630 -32.35403 -31.77865 -29.56855 -28.10697 -27.58036 -24.70101 -23.03895 -22.20719 -20.58477 -19.78783 -18.09623 -17.37991 -16.42539 -16.00589 -15.94920 -15.68316 -15.04076 -14.41797 -14.16671 -13.72182 -13.61137 -13.56065 -13.28071 -12.79236 -12.72354 -12.32502 -12.28697 -11.84349 -11.40719 -11.23548 -10.83107 -10.66200 -10.62887 -10.51225 -10.40722 -9.80857 -9.68820 -9.34612 -9.09402 -8.95011 -8.71079 -8.32064 -5.97488 -3.98811 0.83135 0.98750 2.55548 2.78885 3.34299 3.41611 3.47403 3.75727 3.85858 4.16414 4.39739 4.50446 4.90739 4.92982 5.05878 5.10940 5.19381 5.31641 5.38683 5.38828 5.51163 5.58800 5.65443 5.68642 5.78836 6.01285 6.18923 6.47856 6.69593 6.88932 6.99481 7.09895 7.15125 7.70821 7.82884 8.03053 8.12767 8.34027 8.46838 9.08486 9.65283 11.14087 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.041706 B = 0.003198 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.202484 B = 8752.049607 C = 9386.896518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.205 3.795 3 C -0.272 4.272 4 C 0.204 3.796 5 C -0.104 4.104 6 N -0.560 5.560 7 C 0.549 3.451 8 N -0.647 5.647 9 C 0.505 3.495 10 O -0.462 6.462 11 C -0.133 4.133 12 C -0.096 4.096 13 C 0.020 3.980 14 C -0.517 4.517 15 H 0.057 0.943 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.508 5.508 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.144 0.856 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.422 0.578 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 25.844 -0.027 25.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.057 3.943 3 C -0.296 4.296 4 C 0.057 3.943 5 C -0.161 4.161 6 N -0.283 5.283 7 C 0.193 3.807 8 N -0.297 5.297 9 C 0.292 3.708 10 O -0.328 6.328 11 C -0.173 4.173 12 C -0.134 4.134 13 C -0.017 4.017 14 C -0.556 4.556 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.229 5.229 23 H 0.104 0.896 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.162 0.838 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.260 0.740 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.346 24.670 -0.028 24.707 hybrid contribution -0.336 -0.035 -0.025 0.339 sum -1.682 24.635 -0.053 24.692 Atomic orbital electron populations 1.20782 0.87714 1.04063 1.03727 1.21732 0.97643 0.87351 0.87592 1.22373 0.95455 1.00394 1.11372 1.21410 0.91467 0.92861 0.88604 1.20767 1.00136 0.91566 1.03637 1.67630 1.41296 0.97748 1.21597 1.19578 0.85623 0.86000 0.89472 1.43715 1.11321 1.02364 1.72306 1.21700 0.88792 0.84860 0.75490 1.90790 1.13499 1.86254 1.42294 1.21899 1.00739 0.90333 1.04327 1.21489 0.96477 0.93491 1.01925 1.19134 0.95602 0.89706 0.97239 1.21302 0.93286 0.90918 1.50053 0.92485 1.25020 0.95174 0.98957 0.95388 1.69968 1.13252 1.19243 1.51267 0.86536 0.81756 0.82232 0.77514 1.19669 1.21042 1.21046 1.68390 1.06849 1.29683 1.18000 0.89636 0.89537 0.90220 0.83807 0.89693 0.90058 0.89959 0.74030 0.88805 0.88790 0.92487 0.92502 0.96501 0.96504 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.22 36.01 0.37 -0.60 16 2 C 0.20 2.57 6.82 -82.26 -0.56 2.01 16 3 C -0.27 -2.70 9.53 -39.31 -0.37 -3.07 16 4 C 0.20 2.16 6.82 -82.26 -0.56 1.60 16 5 C -0.10 -0.65 10.22 36.01 0.37 -0.28 16 6 N -0.56 -7.46 10.39 -10.06 -0.10 -7.57 16 7 C 0.55 8.46 8.38 -322.25 -2.70 5.76 16 8 N -0.65 -9.20 5.40 -13.07 -0.07 -9.28 16 9 C 0.50 8.55 7.79 -10.98 -0.09 8.46 16 10 O -0.46 -9.56 14.18 5.57 0.08 -9.49 16 11 C -0.13 -2.18 5.70 -27.88 -0.16 -2.33 16 12 C -0.10 -2.05 4.44 -26.73 -0.12 -2.17 16 13 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 14 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 15 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 18 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 N -0.51 -8.31 7.81 -10.05 -0.08 -8.39 16 23 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.08 0.49 8.09 -51.93 -0.42 0.07 16 26 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.42 4.58 8.81 -40.82 -0.36 4.22 16 31 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 34 H 0.06 1.27 8.10 -51.93 -0.42 0.84 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 321.84 15.07 4.85 4.85 Total: -1.00 -35.70 321.84 -9.37 -45.07 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -5.39 Total: -1.84 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -4.37 Total: -4.04 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.48 Total: -51.63 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.49 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.70 -9.37 -45.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593952317.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.108 kcal (2) G-P(sol) polarization free energy of solvation -35.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds