Wall clock time and date at job start Mon Mar 30 2020 07:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38612 * 120.40810 * 2 1 4 4 C 1.38611 * 118.53503 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.40596 * 179.97438 * 4 3 2 6 6 N 1.32272 * 119.18720 * 359.97438 * 4 3 2 7 7 C 1.32402 * 120.74775 * 0.02562 * 6 4 3 8 8 N 1.38942 * 119.20075 * 179.97438 * 7 6 4 9 9 C 1.34784 * 119.99824 * 179.97438 * 8 7 6 10 10 O 1.21261 * 119.99715 * 359.72774 * 9 8 7 11 11 C 1.50695 * 119.99635 * 179.97438 * 9 8 7 12 12 C 1.53002 * 109.47004 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47542 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.47478 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99866 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99925 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00389 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47361 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47609 * 119.99854 * 18 16 14 21 21 H 1.48501 * 109.47072 * 239.99899 * 18 16 14 22 22 N 1.32278 * 120.40468 * 180.28058 * 2 1 3 23 23 H 1.09006 * 109.46562 * 89.99900 * 1 2 3 24 24 H 1.08999 * 109.46859 * 209.99760 * 1 2 3 25 25 H 1.08999 * 109.46868 * 330.00172 * 1 2 3 26 26 H 1.08005 * 120.73157 * 0.04594 * 3 2 1 27 27 H 1.08995 * 109.47117 * 270.02219 * 5 4 3 28 28 H 1.09002 * 109.46881 * 30.02173 * 5 4 3 29 29 H 1.09002 * 109.46969 * 150.01763 * 5 4 3 30 30 H 0.96999 * 120.00132 * 359.97438 * 8 7 6 31 31 H 1.09005 * 109.47403 * 300.00056 * 11 9 8 32 32 H 1.09002 * 109.47422 * 60.00295 * 11 9 8 33 33 H 1.08997 * 109.47244 * 300.00535 * 12 11 9 34 34 H 1.09002 * 109.46787 * 59.99910 * 12 11 9 35 35 H 1.08997 * 109.47365 * 300.00556 * 13 12 11 36 36 H 1.09004 * 109.46747 * 59.99765 * 13 12 11 37 37 H 0.96998 * 120.00132 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2087 1.1954 0.0000 4 6 3.5940 1.1501 -0.0005 5 6 4.3989 2.4243 -0.0011 6 7 4.2010 -0.0251 -0.0005 7 6 3.5006 -1.1487 -0.0005 8 7 4.1712 -2.3655 -0.0010 9 6 3.4742 -3.5192 -0.0005 10 8 2.2619 -3.4950 0.0054 11 6 4.2016 -4.8389 -0.0017 12 6 3.1845 -5.9819 -0.0001 13 6 3.9229 -7.3218 -0.0019 14 6 2.9211 -8.4476 0.0002 15 1 1.8634 -8.2291 0.0023 16 6 3.3547 -9.7564 -0.0003 17 7 4.6427 -10.0224 -0.0033 18 14 2.1129 -11.1518 0.0016 19 1 0.7379 -10.5908 0.0043 20 1 2.3047 -11.9870 -1.2111 21 1 2.3086 -11.9869 1.2139 22 7 2.1765 -1.1408 -0.0056 23 1 -0.3633 0.0000 -1.0278 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6874 2.1414 0.0007 27 1 4.5922 2.7315 -1.0289 28 1 3.8408 3.2068 0.5131 29 1 5.3457 2.2562 0.5121 30 1 5.1410 -2.3848 -0.0018 31 1 4.8261 -4.9089 -0.8924 32 1 4.8281 -4.9094 0.8876 33 1 2.5604 -5.9117 0.8908 34 1 2.5577 -5.9116 -0.8891 35 1 4.5467 -7.3918 -0.8930 36 1 4.5500 -7.3923 0.8869 37 1 4.9477 -10.9431 -0.0041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593952317.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:41 Heat of formation + Delta-G solvation = -19.109093 kcal Electronic energy + Delta-G solvation = -18733.080198 eV Core-core repulsion = 15702.463594 eV Total energy + Delta-G solvation = -3030.616604 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.39635 -40.66001 -36.56833 -36.06443 -35.74011 -34.09783 -33.02189 -30.35543 -29.85482 -28.31564 -26.37213 -24.47841 -23.13119 -22.17922 -21.15806 -19.21492 -18.45808 -18.38509 -17.37847 -17.18573 -16.48423 -16.45201 -16.24407 -15.32283 -15.01584 -14.72948 -14.31970 -14.29445 -14.00366 -13.78113 -13.68794 -13.32075 -13.10973 -12.96158 -12.64933 -12.56406 -12.40830 -12.15428 -11.70533 -11.55844 -11.46714 -11.32178 -11.25533 -10.91808 -10.54599 -10.04328 -9.68620 -8.20559 -6.30163 -0.12373 0.11831 1.39222 1.39512 1.47983 1.53681 1.54147 2.41465 2.79167 3.00673 3.12675 3.31065 3.52422 3.84536 4.13410 4.16200 4.23241 4.31558 4.46313 4.67132 4.70442 4.74356 4.78644 4.87104 4.92773 4.93949 5.06754 5.11756 5.19213 5.21279 5.53803 5.58075 5.75109 5.86518 6.00407 6.14729 6.27789 6.85405 6.98023 7.27289 7.38483 8.91216 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.041706 B = 0.003198 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.202484 B = 8752.049607 C = 9386.896518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.178 3.822 3 C -0.253 4.253 4 C 0.190 3.810 5 C -0.099 4.099 6 N -0.567 5.567 7 C 0.521 3.479 8 N -0.635 5.635 9 C 0.513 3.487 10 O -0.508 6.508 11 C -0.122 4.122 12 C -0.082 4.082 13 C 0.026 3.974 14 C -0.546 4.546 15 H 0.051 0.949 16 C 0.003 3.997 17 N -0.929 5.929 18 Si 0.961 3.039 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.275 1.275 22 N -0.554 5.554 23 H 0.094 0.906 24 H 0.062 0.938 25 H 0.115 0.885 26 H 0.187 0.813 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.436 0.564 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.003 0.997 36 H 0.003 0.997 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.211 27.991 -0.044 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.032 3.968 3 C -0.276 4.276 4 C 0.044 3.956 5 C -0.156 4.156 6 N -0.290 5.290 7 C 0.165 3.835 8 N -0.287 5.287 9 C 0.300 3.700 10 O -0.378 6.378 11 C -0.161 4.161 12 C -0.120 4.120 13 C -0.011 4.011 14 C -0.584 4.584 15 H 0.069 0.931 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.786 3.214 19 H -0.193 1.193 20 H -0.201 1.201 21 H -0.201 1.201 22 N -0.277 5.277 23 H 0.112 0.888 24 H 0.081 0.919 25 H 0.134 0.866 26 H 0.205 0.795 27 H 0.118 0.882 28 H 0.128 0.872 29 H 0.099 0.901 30 H 0.276 0.724 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.485 26.873 -0.044 26.914 hybrid contribution -0.274 -0.559 -0.022 0.623 sum -1.759 26.314 -0.067 26.373 Atomic orbital electron populations 1.20866 0.85920 1.04644 1.04421 1.22361 0.99068 0.87511 0.87848 1.22816 0.95294 1.01092 1.08423 1.22288 0.92591 0.93347 0.87388 1.20907 0.99823 0.89900 1.04923 1.67708 1.41411 0.98079 1.21811 1.19724 0.85873 0.86627 0.91244 1.43364 1.11867 1.01779 1.71700 1.21567 0.88131 0.85583 0.74730 1.90773 1.15288 1.86965 1.44775 1.21712 0.99478 0.88376 1.06571 1.21183 0.96894 0.93422 1.00548 1.19015 0.94979 0.91356 0.95757 1.21715 0.93668 0.92483 1.50567 0.93080 1.25895 0.97230 1.01639 0.94732 1.70067 1.15018 1.20179 1.51687 0.85455 0.79180 0.78769 0.78002 1.19251 1.20068 1.20077 1.68322 1.07706 1.32139 1.19486 0.88790 0.91869 0.86640 0.79526 0.88216 0.87150 0.90115 0.72365 0.86539 0.86532 0.93888 0.93897 0.97834 0.97844 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.76 10.22 71.24 0.73 -1.03 16 2 C 0.18 4.31 6.82 42.58 0.29 4.60 16 3 C -0.25 -4.32 9.53 22.45 0.21 -4.11 16 4 C 0.19 3.58 6.82 42.58 0.29 3.87 16 5 C -0.10 -0.89 10.22 71.24 0.73 -0.16 16 6 N -0.57 -14.55 10.39 -185.73 -1.93 -16.48 16 7 C 0.52 16.11 8.38 261.29 2.19 18.30 16 8 N -0.64 -18.15 5.40 -313.66 -1.69 -19.85 16 9 C 0.51 17.66 7.79 87.65 0.68 18.34 16 10 O -0.51 -21.88 14.18 -2.97 -0.04 -21.93 16 11 C -0.12 -3.97 5.70 29.85 0.17 -3.80 16 12 C -0.08 -3.63 4.44 30.59 0.14 -3.49 16 13 C 0.03 1.38 4.97 29.85 0.15 1.53 16 14 C -0.55 -32.31 9.11 25.60 0.23 -32.07 16 15 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 16 C 0.00 0.17 5.46 84.65 0.46 0.64 16 17 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 18 Si 0.96 45.53 29.54 68.60 2.03 47.56 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 N -0.55 -18.44 7.81 -185.72 -1.45 -19.89 16 23 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 24 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.12 1.10 8.09 -2.39 -0.02 1.08 16 26 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 27 H 0.10 0.66 8.14 -2.39 -0.02 0.65 16 28 H 0.11 0.38 8.10 -2.39 -0.02 0.36 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 30 H 0.44 9.24 8.81 -92.71 -0.82 8.42 16 31 H 0.12 3.29 8.14 -2.38 -0.02 3.27 16 32 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 33 H 0.04 1.98 8.10 -2.39 -0.02 1.96 16 34 H 0.04 1.98 8.10 -2.39 -0.02 1.96 16 35 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -79.95 321.84 3.72 -76.23 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.25 Total: 8.10 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 6.27 Total: 2.61 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -4.79 Total: -112.56 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.04 Total: -21.93 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -79.95 3.72 -76.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593952317.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.119 kcal (2) G-P(sol) polarization free energy of solvation -79.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds