Wall clock time and date at job start Mon Mar 30 2020 06:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47176 * 2 1 4 4 C 1.50697 * 109.47046 * 120.00238 * 2 1 3 5 5 H 1.08001 * 120.00309 * 119.99917 * 4 2 1 6 6 C 1.37880 * 120.00320 * 299.99468 * 4 2 1 7 7 N 1.31512 * 119.99733 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00400 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47179 * 60.00337 * 8 6 4 10 10 H 1.48499 * 109.47214 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46936 * 300.00058 * 8 6 4 12 12 C 1.50707 * 109.46807 * 239.99700 * 2 1 3 13 13 O 1.21280 * 119.99981 * 239.99685 * 12 2 1 14 14 N 1.34774 * 119.99549 * 60.00717 * 12 2 1 15 15 C 1.46503 * 119.99680 * 179.97438 * 14 12 2 16 16 H 1.08999 * 109.70713 * 324.45561 * 15 14 12 17 17 C 1.53290 * 109.90600 * 204.12959 * 15 14 12 18 18 C 1.53124 * 109.52267 * 190.80124 * 17 15 14 19 19 C 1.53345 * 109.52868 * 69.89271 * 18 17 15 20 20 C 1.50935 * 108.42047 * 309.94541 * 19 18 17 21 21 O 1.33826 * 127.79744 * 196.80817 * 20 19 18 22 22 C 1.34520 * 109.41577 * 179.84345 * 21 20 19 23 23 C 1.34764 * 108.48678 * 0.03595 * 22 21 20 24 24 C 1.34894 * 123.90078 * 16.69680 * 20 19 18 25 25 H 1.08997 * 109.46956 * 59.99510 * 1 2 3 26 26 H 1.08996 * 109.47176 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46981 * 299.99829 * 1 2 3 28 28 H 0.96993 * 120.00336 * 179.97438 * 7 6 4 29 29 H 0.97000 * 120.00486 * 359.97438 * 14 12 2 30 30 H 1.09004 * 109.52385 * 70.73138 * 17 15 14 31 31 H 1.08999 * 109.34889 * 310.76632 * 17 15 14 32 32 H 1.08993 * 109.46117 * 309.87387 * 18 17 15 33 33 H 1.08995 * 109.46157 * 189.90414 * 18 17 15 34 34 H 1.08995 * 109.67017 * 190.21623 * 19 18 17 35 35 H 1.09002 * 109.67537 * 69.67893 * 19 18 17 36 36 H 1.07998 * 125.75935 * 180.02562 * 22 21 20 37 37 H 1.08006 * 126.68524 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4828 7 7 0.9430 0.8296 2.6035 8 14 2.3226 -1.1196 4.0079 9 1 3.8075 -1.1191 4.0077 10 1 1.8271 -0.4200 5.2205 11 1 1.8280 -2.5199 4.0081 12 6 2.0323 -0.7105 -1.2305 13 8 2.7296 -1.6966 -1.1192 14 7 1.7067 -0.2500 -2.4545 15 6 2.1954 -0.9403 -3.6507 16 1 3.1987 -1.3255 -3.4687 17 6 2.2303 0.0309 -4.8362 18 6 2.4796 -0.7495 -6.1299 19 6 1.2415 -1.5881 -6.4694 20 6 0.8411 -2.3666 -5.2399 21 8 0.0318 -3.4302 -5.1701 22 6 -0.0668 -3.8339 -3.8907 23 6 0.6877 -3.0198 -3.1264 24 6 1.2696 -2.0780 -3.9938 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.7084 1.1608 3.4844 29 1 1.1489 0.5386 -2.5436 30 1 3.0306 0.7563 -4.6894 31 1 1.2754 0.5520 -4.9044 32 1 3.3386 -1.4072 -5.9974 33 1 2.6791 -0.0511 -6.9426 34 1 1.4765 -2.2777 -7.2800 35 1 0.4249 -0.9317 -6.7702 36 1 -0.6520 -4.6693 -3.5358 37 1 0.8202 -3.0793 -2.0561 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596731965.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:47 Heat of formation + Delta-G solvation = -37.432142 kcal Electronic energy + Delta-G solvation = -20140.242459 eV Core-core repulsion = 17076.538557 eV Total energy + Delta-G solvation = -3063.703902 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.50242 -38.96934 -36.98820 -33.73557 -33.58736 -32.24346 -30.53087 -29.31141 -28.10128 -25.09952 -23.73562 -22.26805 -22.15870 -21.01556 -19.26297 -18.85702 -17.15066 -16.36259 -16.02594 -15.83126 -15.20170 -14.72711 -14.42679 -14.30107 -13.92169 -13.54869 -12.92355 -12.76235 -12.60678 -12.30072 -12.19002 -12.05136 -11.48721 -11.30821 -11.01195 -10.97779 -10.78498 -10.68105 -10.63578 -10.21550 -9.92515 -9.39355 -8.95204 -8.56506 -8.46395 -8.28517 -8.07921 -6.00290 -4.03288 1.90566 2.86351 3.10009 3.37781 3.40130 3.45744 3.79203 3.99724 4.49611 4.62085 4.69988 4.87707 5.01479 5.15651 5.31426 5.33254 5.44414 5.45442 5.55426 5.72525 5.82254 5.86919 6.09482 6.21380 6.34828 6.37478 6.40405 6.66119 6.81716 6.87275 6.97092 7.16202 7.37567 7.51525 7.79137 8.02578 8.19756 8.51030 9.05469 9.31124 9.62243 11.07296 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031384 B = 0.005121 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.962523 B = 5466.306536 C = 5815.531257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.521 3.479 13 O -0.544 6.544 14 N -0.737 5.737 15 C 0.212 3.788 16 H 0.091 0.909 17 C -0.128 4.128 18 C -0.111 4.111 19 C -0.032 4.032 20 C -0.027 4.027 21 O -0.177 6.177 22 C -0.064 4.064 23 C -0.172 4.172 24 C -0.177 4.177 25 H 0.011 0.989 26 H 0.030 0.970 27 H 0.092 0.908 28 H 0.261 0.739 29 H 0.395 0.605 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.200 0.800 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.496 -1.570 -17.456 17.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.311 3.689 13 O -0.419 6.419 14 N -0.390 5.390 15 C 0.106 3.894 16 H 0.109 0.891 17 C -0.166 4.166 18 C -0.149 4.149 19 C -0.069 4.069 20 C -0.078 4.078 21 O -0.073 6.073 22 C -0.130 4.130 23 C -0.192 4.192 24 C -0.179 4.179 25 H 0.030 0.970 26 H 0.049 0.951 27 H 0.111 0.889 28 H 0.070 0.930 29 H 0.229 0.771 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.217 0.783 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.187 -2.303 -17.439 17.631 hybrid contribution -0.095 -0.161 1.142 1.157 sum -1.282 -2.464 -16.297 16.533 Atomic orbital electron populations 1.21722 0.96593 0.99715 1.00815 1.18863 0.94079 0.96807 0.89428 0.93134 1.21107 1.30914 1.12771 0.89022 0.90873 1.24947 0.95150 0.95073 0.99073 1.69861 1.37121 1.23129 1.23568 0.86520 0.79275 0.79704 0.81710 1.20218 1.21409 1.20253 1.21946 0.78270 0.84250 0.84433 1.90529 1.37946 1.26772 1.86695 1.46296 1.55316 1.32204 1.05177 1.19124 0.96149 0.88955 0.85126 0.89110 1.21881 1.02988 0.98027 0.93660 1.21532 0.97160 0.98657 0.97537 1.20156 0.98294 0.96482 0.92008 1.22253 0.97310 0.91114 0.97147 1.83841 1.54336 1.39226 1.29906 1.24025 1.05723 1.03019 0.80261 1.21690 0.99729 0.96221 1.01512 1.20643 1.03986 1.00885 0.92434 0.96993 0.95126 0.88944 0.92962 0.77092 0.90501 0.91078 0.90977 0.90192 0.90085 0.89841 0.78329 0.83086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.87 37.16 0.33 -2.71 16 2 C 0.03 0.73 2.64 -92.92 -0.25 0.49 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -14.23 8.37 -34.44 -0.29 -14.52 16 5 H 0.07 2.20 6.75 -52.49 -0.35 1.84 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.33 11.32 55.43 0.63 -24.70 16 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.52 11.86 6.43 -10.98 -0.07 11.79 16 13 O -0.54 -14.06 14.30 5.56 0.08 -13.98 16 14 N -0.74 -13.07 4.93 -54.81 -0.27 -13.34 16 15 C 0.21 3.31 2.80 -68.96 -0.19 3.12 16 16 H 0.09 1.60 7.61 -51.93 -0.40 1.20 16 17 C -0.13 -1.40 5.41 -26.52 -0.14 -1.54 16 18 C -0.11 -0.99 5.90 -26.49 -0.16 -1.14 16 19 C -0.03 -0.31 6.30 -27.59 -0.17 -0.49 16 20 C -0.03 -0.38 7.22 -35.38 -0.26 -0.64 16 21 O -0.18 -2.61 10.65 6.38 0.07 -2.54 16 22 C -0.06 -0.93 12.10 29.50 0.36 -0.57 16 23 C -0.17 -3.03 10.22 -39.90 -0.41 -3.44 16 24 C -0.18 -2.88 5.62 -104.93 -0.59 -3.47 16 25 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.40 6.15 8.02 -40.82 -0.33 5.83 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.20 2.17 8.06 -52.49 -0.42 1.74 16 37 H 0.15 3.05 7.08 -52.48 -0.37 2.68 16 LS Contribution 303.76 15.07 4.58 4.58 Total: -1.00 -32.25 303.76 -6.96 -39.21 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.09 Total: 5.40 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -1.93 Total: -11.59 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.36 Total: -38.04 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.15 Total: -16.52 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.25 -6.96 -39.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596731965.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.780 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds