Wall clock time and date at job start Mon Mar 30 2020 06:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47176 * 2 1 4 4 C 1.50697 * 109.47046 * 120.00238 * 2 1 3 5 5 H 1.08001 * 120.00309 * 119.99917 * 4 2 1 6 6 C 1.37880 * 120.00320 * 299.99468 * 4 2 1 7 7 N 1.31512 * 119.99733 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00400 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47179 * 60.00337 * 8 6 4 10 10 H 1.48499 * 109.47214 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46936 * 300.00058 * 8 6 4 12 12 C 1.50707 * 109.46807 * 239.99700 * 2 1 3 13 13 O 1.21280 * 119.99981 * 239.99685 * 12 2 1 14 14 N 1.34774 * 119.99549 * 60.00717 * 12 2 1 15 15 C 1.46503 * 119.99680 * 179.97438 * 14 12 2 16 16 H 1.08999 * 109.70713 * 324.45561 * 15 14 12 17 17 C 1.53290 * 109.90600 * 204.12959 * 15 14 12 18 18 C 1.53124 * 109.52267 * 190.80124 * 17 15 14 19 19 C 1.53345 * 109.52868 * 69.89271 * 18 17 15 20 20 C 1.50935 * 108.42047 * 309.94541 * 19 18 17 21 21 O 1.33826 * 127.79744 * 196.80817 * 20 19 18 22 22 C 1.34520 * 109.41577 * 179.84345 * 21 20 19 23 23 C 1.34764 * 108.48678 * 0.03595 * 22 21 20 24 24 C 1.34894 * 123.90078 * 16.69680 * 20 19 18 25 25 H 1.08997 * 109.46956 * 59.99510 * 1 2 3 26 26 H 1.08996 * 109.47176 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46981 * 299.99829 * 1 2 3 28 28 H 0.96993 * 120.00336 * 179.97438 * 7 6 4 29 29 H 0.97000 * 120.00486 * 359.97438 * 14 12 2 30 30 H 1.09004 * 109.52385 * 70.73138 * 17 15 14 31 31 H 1.08999 * 109.34889 * 310.76632 * 17 15 14 32 32 H 1.08993 * 109.46117 * 309.87387 * 18 17 15 33 33 H 1.08995 * 109.46157 * 189.90414 * 18 17 15 34 34 H 1.08995 * 109.67017 * 190.21623 * 19 18 17 35 35 H 1.09002 * 109.67537 * 69.67893 * 19 18 17 36 36 H 1.07998 * 125.75935 * 180.02562 * 22 21 20 37 37 H 1.08006 * 126.68524 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4828 7 7 0.9430 0.8296 2.6035 8 14 2.3226 -1.1196 4.0079 9 1 3.8075 -1.1191 4.0077 10 1 1.8271 -0.4200 5.2205 11 1 1.8280 -2.5199 4.0081 12 6 2.0323 -0.7105 -1.2305 13 8 2.7296 -1.6966 -1.1192 14 7 1.7067 -0.2500 -2.4545 15 6 2.1954 -0.9403 -3.6507 16 1 3.1987 -1.3255 -3.4687 17 6 2.2303 0.0309 -4.8362 18 6 2.4796 -0.7495 -6.1299 19 6 1.2415 -1.5881 -6.4694 20 6 0.8411 -2.3666 -5.2399 21 8 0.0318 -3.4302 -5.1701 22 6 -0.0668 -3.8339 -3.8907 23 6 0.6877 -3.0198 -3.1264 24 6 1.2696 -2.0780 -3.9938 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.7084 1.1608 3.4844 29 1 1.1489 0.5386 -2.5436 30 1 3.0306 0.7563 -4.6894 31 1 1.2754 0.5520 -4.9044 32 1 3.3386 -1.4072 -5.9974 33 1 2.6791 -0.0511 -6.9426 34 1 1.4765 -2.2777 -7.2800 35 1 0.4249 -0.9317 -6.7702 36 1 -0.6520 -4.6693 -3.5358 37 1 0.8202 -3.0793 -2.0561 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596731965.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:47 Heat of formation + Delta-G solvation = -58.562250 kcal Electronic energy + Delta-G solvation = -20141.158729 eV Core-core repulsion = 17076.538557 eV Total energy + Delta-G solvation = -3064.620172 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.66283 -40.63382 -38.18426 -35.76866 -34.96053 -33.56110 -32.44972 -30.39637 -29.30664 -27.20975 -25.10575 -23.78559 -23.18432 -22.29104 -20.98625 -19.94583 -18.47681 -18.21587 -17.59780 -17.31179 -16.70522 -16.24361 -15.85885 -15.57533 -15.30671 -14.72659 -14.62835 -14.28246 -13.87583 -13.78848 -13.40160 -13.19745 -13.07863 -12.97904 -12.74930 -12.60038 -12.22129 -12.20076 -12.00343 -11.83817 -11.63023 -11.06325 -10.68346 -10.58338 -10.26656 -10.01870 -9.21842 -8.15792 -6.26129 0.78019 1.39469 1.41069 1.49570 1.58247 1.95613 2.07239 2.38139 2.60481 3.13570 3.69616 3.80979 3.86132 4.11095 4.16392 4.32395 4.33953 4.54018 4.60883 4.64120 4.72404 4.89380 4.93557 4.97171 5.00094 5.01220 5.14910 5.24890 5.31314 5.35304 5.48198 5.56206 5.67551 5.75538 5.92586 6.19445 6.20793 6.75324 6.87828 7.39652 7.58981 8.89959 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031384 B = 0.005121 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.962523 B = 5466.306536 C = 5815.531257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.025 3.975 3 H 0.040 0.960 4 C -0.528 4.528 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.273 1.273 11 H -0.278 1.278 12 C 0.524 3.476 13 O -0.584 6.584 14 N -0.717 5.717 15 C 0.209 3.791 16 H 0.062 0.938 17 C -0.121 4.121 18 C -0.106 4.106 19 C -0.032 4.032 20 C -0.012 4.012 21 O -0.176 6.176 22 C -0.048 4.048 23 C -0.216 4.216 24 C -0.210 4.210 25 H 0.047 0.953 26 H 0.018 0.982 27 H 0.071 0.929 28 H 0.265 0.735 29 H 0.408 0.592 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.233 0.767 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.164 -0.942 -19.932 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.004 3.996 3 H 0.058 0.942 4 C -0.567 4.567 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.203 1.203 12 C 0.313 3.687 13 O -0.463 6.463 14 N -0.369 5.369 15 C 0.104 3.896 16 H 0.080 0.920 17 C -0.158 4.158 18 C -0.143 4.143 19 C -0.069 4.069 20 C -0.063 4.063 21 O -0.072 6.072 22 C -0.115 4.115 23 C -0.235 4.235 24 C -0.212 4.212 25 H 0.066 0.934 26 H 0.037 0.963 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.244 0.756 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.249 0.751 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.879 -1.639 -19.957 20.112 hybrid contribution 0.101 -0.369 1.870 1.909 sum -1.778 -2.008 -18.087 18.284 Atomic orbital electron populations 1.21514 0.95280 0.99050 1.01479 1.18794 0.95106 0.95928 0.89802 0.94177 1.21240 1.31595 1.12689 0.91153 0.93502 1.25592 0.95196 0.95750 1.01380 1.69937 1.37148 1.23572 1.24356 0.85662 0.78681 0.78675 0.78912 1.20169 1.19778 1.20324 1.21479 0.78039 0.83612 0.85530 1.90503 1.39915 1.28442 1.87435 1.46023 1.54268 1.32067 1.04576 1.19336 0.94442 0.90184 0.85655 0.92021 1.21903 1.04267 0.97246 0.92418 1.21583 0.96530 0.98930 0.97291 1.20472 0.99257 0.96776 0.90388 1.23063 0.95234 0.90086 0.97930 1.83884 1.54319 1.39413 1.29558 1.24488 1.04464 1.02703 0.79841 1.21599 1.02690 0.98924 1.00304 1.20729 1.05454 1.01582 0.93469 0.93365 0.96322 0.91045 0.92581 0.75594 0.89403 0.89653 0.91740 0.86335 0.87813 0.87414 0.75127 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.87 71.98 0.64 -4.81 16 2 C 0.02 1.29 2.64 -12.28 -0.03 1.25 16 3 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.53 -31.33 8.37 25.60 0.21 -31.11 16 5 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 6 C 0.02 1.14 5.30 84.66 0.45 1.59 16 7 N -0.91 -51.91 11.32 21.45 0.24 -51.66 16 8 Si 0.96 45.75 29.54 68.60 2.03 47.78 16 9 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 C 0.52 24.88 6.43 87.66 0.56 25.44 16 13 O -0.58 -32.09 14.30 -3.03 -0.04 -32.14 16 14 N -0.72 -25.70 4.93 -445.72 -2.20 -27.90 16 15 C 0.21 6.50 2.80 44.32 0.12 6.62 16 16 H 0.06 2.27 7.61 -2.39 -0.02 2.25 16 17 C -0.12 -2.31 5.41 30.73 0.17 -2.15 16 18 C -0.11 -1.46 5.90 30.75 0.18 -1.28 16 19 C -0.03 -0.48 6.30 30.04 0.19 -0.30 16 20 C -0.01 -0.31 7.22 24.99 0.18 -0.13 16 21 O -0.18 -4.81 10.65 -0.09 0.00 -4.81 16 22 C -0.05 -1.38 12.10 67.02 0.81 -0.57 16 23 C -0.22 -7.84 10.22 22.06 0.23 -7.62 16 24 C -0.21 -6.79 5.62 -20.06 -0.11 -6.90 16 25 H 0.05 1.87 7.56 -2.39 -0.02 1.85 16 26 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 3.70 6.07 -2.38 -0.01 3.68 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.41 12.34 8.02 -92.71 -0.74 11.60 16 30 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 32 H 0.06 1.02 8.12 -2.39 -0.02 1.00 16 33 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.23 4.70 8.06 -2.91 -0.02 4.68 16 37 H 0.11 4.98 7.08 -2.91 -0.02 4.96 16 Total: -1.00 -73.67 303.76 3.96 -69.71 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.34 Total: 18.97 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 3.60 Total: -19.95 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -1.95 Total: -79.56 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.04 Total: -36.95 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -73.67 3.96 -69.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596731965.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.149 kcal (2) G-P(sol) polarization free energy of solvation -73.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds