Wall clock time and date at job start Mon Mar 30 2020 06:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47143 * 2 1 4 4 C 1.50701 * 109.47172 * 239.99306 * 2 1 3 5 5 H 1.07992 * 119.99888 * 239.99645 * 4 2 1 6 6 C 1.37875 * 119.99677 * 60.00478 * 4 2 1 7 7 N 1.31522 * 119.99987 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99984 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47313 * 59.99759 * 8 6 4 10 10 H 1.48499 * 109.47294 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46998 * 299.99408 * 8 6 4 12 12 C 1.50703 * 109.47232 * 119.99439 * 2 1 3 13 13 O 1.21281 * 119.99897 * 119.99987 * 12 2 1 14 14 N 1.34771 * 119.99843 * 300.00491 * 12 2 1 15 15 C 1.46503 * 119.99906 * 179.97438 * 14 12 2 16 16 H 1.09002 * 109.67977 * 34.48039 * 15 14 12 17 17 C 1.53405 * 109.68290 * 154.99573 * 15 14 12 18 18 C 1.53122 * 109.41840 * 169.33446 * 17 15 14 19 19 C 1.53332 * 109.54322 * 290.02089 * 18 17 15 20 20 C 1.50939 * 108.45618 * 50.03052 * 19 18 17 21 21 O 1.33780 * 127.83978 * 163.20635 * 20 19 18 22 22 C 1.34517 * 109.43073 * 180.10960 * 21 20 19 23 23 C 1.34770 * 108.48864 * 359.97438 * 22 21 20 24 24 C 1.34935 * 123.85944 * 343.29875 * 20 19 18 25 25 H 1.09004 * 109.47036 * 300.00208 * 1 2 3 26 26 H 1.09000 * 109.46971 * 60.00677 * 1 2 3 27 27 H 1.08995 * 109.46927 * 180.02562 * 1 2 3 28 28 H 0.96999 * 119.99793 * 180.02562 * 7 6 4 29 29 H 0.97002 * 120.00414 * 359.97438 * 14 12 2 30 30 H 1.08997 * 109.47682 * 49.35480 * 17 15 14 31 31 H 1.08997 * 109.49245 * 289.32679 * 17 15 14 32 32 H 1.09007 * 109.45938 * 169.99657 * 18 17 15 33 33 H 1.09005 * 109.44805 * 50.03752 * 18 17 15 34 34 H 1.09002 * 109.67541 * 169.78411 * 19 18 17 35 35 H 1.09004 * 109.67172 * 290.28142 * 19 18 17 36 36 H 1.08005 * 125.75633 * 179.97438 * 22 21 20 37 37 H 1.07993 * 126.68490 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.8281 -2.5201 -4.0080 10 1 1.8270 -0.4203 -5.2204 11 1 3.8075 -1.1192 -4.0076 12 6 2.0324 -0.7103 1.2305 13 8 2.7297 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4545 15 6 2.1946 -0.9406 3.6508 16 1 3.1901 -1.3425 3.4622 17 6 2.2484 0.0410 4.8285 18 6 2.4993 -0.7333 6.1255 19 6 1.2546 -1.5549 6.4814 20 6 0.8334 -2.3372 5.2613 21 8 0.0112 -3.3910 5.2056 22 6 -0.1045 -3.8014 3.9298 23 6 0.6526 -3.0015 3.1532 24 6 1.2544 -2.0616 4.0092 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.7083 1.1607 -3.4844 29 1 1.1493 0.5391 2.5435 30 1 1.3003 0.5739 4.9010 31 1 3.0559 0.7556 4.6697 32 1 2.7140 -0.0316 6.9316 33 1 3.3494 -1.4021 5.9902 34 1 1.4884 -2.2415 7.2950 35 1 0.4485 -0.8869 6.7852 36 1 -0.7031 -4.6320 3.5858 37 1 0.7736 -3.0688 2.0822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596731966.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:50 Heat of formation + Delta-G solvation = -37.484343 kcal Electronic energy + Delta-G solvation = -20132.822621 eV Core-core repulsion = 17069.116455 eV Total energy + Delta-G solvation = -3063.706166 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.51012 -38.96898 -36.98575 -33.73448 -33.59007 -32.24746 -30.52978 -29.30935 -28.10019 -25.09979 -23.73786 -22.26882 -22.15589 -21.02162 -19.26990 -18.85896 -17.15654 -16.36017 -16.02825 -15.83046 -15.20191 -14.73216 -14.42696 -14.30132 -13.91748 -13.54625 -12.92422 -12.76095 -12.61087 -12.30610 -12.19328 -12.05789 -11.48732 -11.30595 -11.01294 -10.97857 -10.78582 -10.68061 -10.63536 -10.21628 -9.92482 -9.40147 -8.95184 -8.56586 -8.46434 -8.28474 -8.08158 -6.00277 -4.03283 1.90111 2.85688 3.09414 3.37804 3.40151 3.45775 3.79071 3.99958 4.49634 4.61935 4.70133 4.87667 5.01228 5.15453 5.31235 5.33229 5.44080 5.45361 5.55299 5.72426 5.82089 5.86825 6.09537 6.20913 6.34634 6.36595 6.40433 6.66018 6.80887 6.87322 6.97075 7.16187 7.37138 7.51530 7.79119 8.02606 8.19754 8.51021 9.05505 9.31092 9.62259 11.07278 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031416 B = 0.005107 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.045026 B = 5481.677073 C = 5826.975744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.521 3.479 13 O -0.544 6.544 14 N -0.737 5.737 15 C 0.212 3.788 16 H 0.092 0.908 17 C -0.128 4.128 18 C -0.111 4.111 19 C -0.032 4.032 20 C -0.027 4.027 21 O -0.176 6.176 22 C -0.064 4.064 23 C -0.172 4.172 24 C -0.177 4.177 25 H 0.011 0.989 26 H 0.092 0.908 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.395 0.605 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.200 0.800 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.498 -1.534 17.485 17.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.311 3.689 13 O -0.420 6.420 14 N -0.390 5.390 15 C 0.106 3.894 16 H 0.110 0.890 17 C -0.166 4.166 18 C -0.149 4.149 19 C -0.069 4.069 20 C -0.078 4.078 21 O -0.073 6.073 22 C -0.130 4.130 23 C -0.192 4.192 24 C -0.180 4.180 25 H 0.030 0.970 26 H 0.111 0.889 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.229 0.771 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.217 0.783 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.189 -2.264 17.470 17.657 hybrid contribution -0.102 -0.164 -1.141 1.157 sum -1.290 -2.428 16.329 16.559 Atomic orbital electron populations 1.21722 0.96590 0.99707 1.00816 1.18865 0.94080 0.96809 0.89430 0.93134 1.21106 1.30905 1.12769 0.89024 0.90872 1.24948 0.95152 0.95074 0.99073 1.69869 1.37126 1.23129 1.23559 0.86519 0.79274 0.79702 0.81707 1.20254 1.21409 1.20219 1.21948 0.78267 0.84246 0.84450 1.90529 1.37959 1.26782 1.86698 1.46301 1.55352 1.32161 1.05186 1.19166 0.96022 0.89103 0.85078 0.88994 1.21904 1.02976 0.97986 0.93688 1.21536 0.97070 0.98797 0.97506 1.20154 0.98125 0.96507 0.92149 1.22255 0.97021 0.91426 0.97100 1.83827 1.53719 1.39613 1.30109 1.24027 1.05652 1.03066 0.80272 1.21674 0.99626 0.96401 1.01467 1.20663 1.03883 1.01022 0.92433 0.96998 0.88937 0.95134 0.92966 0.77088 0.91062 0.90509 0.90197 0.90978 0.90088 0.89844 0.78321 0.83139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.87 37.16 0.33 -2.70 16 2 C 0.03 0.73 2.64 -92.92 -0.25 0.49 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -14.23 8.37 -34.44 -0.29 -14.52 16 5 H 0.07 2.20 6.75 -52.49 -0.35 1.84 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.33 11.32 55.43 0.63 -24.70 16 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 C 0.52 11.86 6.48 -10.99 -0.07 11.79 16 13 O -0.54 -14.09 14.46 5.56 0.08 -14.01 16 14 N -0.74 -13.07 4.91 -54.75 -0.27 -13.34 16 15 C 0.21 3.31 2.82 -68.90 -0.19 3.12 16 16 H 0.09 1.62 7.57 -51.93 -0.39 1.23 16 17 C -0.13 -1.40 5.41 -26.46 -0.14 -1.54 16 18 C -0.11 -0.99 5.89 -26.50 -0.16 -1.14 16 19 C -0.03 -0.31 6.30 -27.59 -0.17 -0.49 16 20 C -0.03 -0.38 7.23 -35.36 -0.26 -0.63 16 21 O -0.18 -2.59 10.64 6.50 0.07 -2.52 16 22 C -0.06 -0.92 12.10 29.50 0.36 -0.57 16 23 C -0.17 -3.02 10.31 -39.90 -0.41 -3.43 16 24 C -0.18 -2.88 5.62 -104.91 -0.59 -3.47 16 25 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 26 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.40 6.16 8.02 -40.82 -0.33 5.83 16 30 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.20 2.15 8.06 -52.48 -0.42 1.73 16 37 H 0.15 3.02 7.21 -52.49 -0.38 2.64 16 LS Contribution 304.15 15.07 4.58 4.58 Total: -1.00 -32.26 304.15 -6.96 -39.22 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.10 Total: 5.38 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -1.94 Total: -11.58 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.36 Total: -38.04 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.15 Total: -16.53 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.26 -6.96 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596731966.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.738 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds