Wall clock time and date at job start Mon Mar 30 2020 06:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47143 * 2 1 4 4 C 1.50701 * 109.47172 * 239.99306 * 2 1 3 5 5 H 1.07992 * 119.99888 * 239.99645 * 4 2 1 6 6 C 1.37875 * 119.99677 * 60.00478 * 4 2 1 7 7 N 1.31522 * 119.99987 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99984 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47313 * 59.99759 * 8 6 4 10 10 H 1.48499 * 109.47294 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46998 * 299.99408 * 8 6 4 12 12 C 1.50703 * 109.47232 * 119.99439 * 2 1 3 13 13 O 1.21281 * 119.99897 * 119.99987 * 12 2 1 14 14 N 1.34771 * 119.99843 * 300.00491 * 12 2 1 15 15 C 1.46503 * 119.99906 * 179.97438 * 14 12 2 16 16 H 1.09002 * 109.67977 * 34.48039 * 15 14 12 17 17 C 1.53405 * 109.68290 * 154.99573 * 15 14 12 18 18 C 1.53122 * 109.41840 * 169.33446 * 17 15 14 19 19 C 1.53332 * 109.54322 * 290.02089 * 18 17 15 20 20 C 1.50939 * 108.45618 * 50.03052 * 19 18 17 21 21 O 1.33780 * 127.83978 * 163.20635 * 20 19 18 22 22 C 1.34517 * 109.43073 * 180.10960 * 21 20 19 23 23 C 1.34770 * 108.48864 * 359.97438 * 22 21 20 24 24 C 1.34935 * 123.85944 * 343.29875 * 20 19 18 25 25 H 1.09004 * 109.47036 * 300.00208 * 1 2 3 26 26 H 1.09000 * 109.46971 * 60.00677 * 1 2 3 27 27 H 1.08995 * 109.46927 * 180.02562 * 1 2 3 28 28 H 0.96999 * 119.99793 * 180.02562 * 7 6 4 29 29 H 0.97002 * 120.00414 * 359.97438 * 14 12 2 30 30 H 1.08997 * 109.47682 * 49.35480 * 17 15 14 31 31 H 1.08997 * 109.49245 * 289.32679 * 17 15 14 32 32 H 1.09007 * 109.45938 * 169.99657 * 18 17 15 33 33 H 1.09005 * 109.44805 * 50.03752 * 18 17 15 34 34 H 1.09002 * 109.67541 * 169.78411 * 19 18 17 35 35 H 1.09004 * 109.67172 * 290.28142 * 19 18 17 36 36 H 1.08005 * 125.75633 * 179.97438 * 22 21 20 37 37 H 1.07993 * 126.68490 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.8281 -2.5201 -4.0080 10 1 1.8270 -0.4203 -5.2204 11 1 3.8075 -1.1192 -4.0076 12 6 2.0324 -0.7103 1.2305 13 8 2.7297 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4545 15 6 2.1946 -0.9406 3.6508 16 1 3.1901 -1.3425 3.4622 17 6 2.2484 0.0410 4.8285 18 6 2.4993 -0.7333 6.1255 19 6 1.2546 -1.5549 6.4814 20 6 0.8334 -2.3372 5.2613 21 8 0.0112 -3.3910 5.2056 22 6 -0.1045 -3.8014 3.9298 23 6 0.6526 -3.0015 3.1532 24 6 1.2544 -2.0616 4.0092 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.7083 1.1607 -3.4844 29 1 1.1493 0.5391 2.5435 30 1 1.3003 0.5739 4.9010 31 1 3.0559 0.7556 4.6697 32 1 2.7140 -0.0316 6.9316 33 1 3.3494 -1.4021 5.9902 34 1 1.4884 -2.2415 7.2950 35 1 0.4485 -0.8869 6.7852 36 1 -0.7031 -4.6320 3.5858 37 1 0.7736 -3.0688 2.0822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596731966.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:50 Heat of formation + Delta-G solvation = -58.598056 kcal Electronic energy + Delta-G solvation = -20133.738180 eV Core-core repulsion = 17069.116455 eV Total energy + Delta-G solvation = -3064.621725 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.66632 -40.63482 -38.18175 -35.76837 -34.96197 -33.56194 -32.44971 -30.39186 -29.30460 -27.21036 -25.10704 -23.78626 -23.17982 -22.29336 -20.99109 -19.94951 -18.47858 -18.21723 -17.59386 -17.31058 -16.70664 -16.24048 -15.86607 -15.57139 -15.30628 -14.72685 -14.62438 -14.28197 -13.87267 -13.79586 -13.40425 -13.19630 -13.08555 -12.97945 -12.74973 -12.60072 -12.22251 -12.19789 -12.00394 -11.83963 -11.63040 -11.06335 -10.68871 -10.58301 -10.26748 -10.01817 -9.21740 -8.15807 -6.26162 0.78003 1.39487 1.41090 1.49589 1.58075 1.95439 2.06978 2.38166 2.60567 3.13539 3.69530 3.81071 3.86228 4.10948 4.16279 4.32133 4.33697 4.53910 4.60875 4.64126 4.72293 4.89365 4.93518 4.96971 5.00071 5.01177 5.14800 5.24746 5.31275 5.35279 5.48175 5.55933 5.67498 5.75467 5.92581 6.19447 6.20753 6.75271 6.87745 7.39624 7.58829 8.89911 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031416 B = 0.005107 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.045026 B = 5481.677073 C = 5826.975744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.025 3.975 3 H 0.040 0.960 4 C -0.528 4.528 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.276 1.276 12 C 0.524 3.476 13 O -0.584 6.584 14 N -0.717 5.717 15 C 0.208 3.792 16 H 0.063 0.937 17 C -0.121 4.121 18 C -0.106 4.106 19 C -0.032 4.032 20 C -0.012 4.012 21 O -0.175 6.175 22 C -0.048 4.048 23 C -0.216 4.216 24 C -0.210 4.210 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.018 0.982 28 H 0.265 0.735 29 H 0.408 0.592 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.233 0.767 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.158 -0.898 19.955 20.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.004 3.996 3 H 0.058 0.942 4 C -0.567 4.567 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.313 3.687 13 O -0.464 6.464 14 N -0.369 5.369 15 C 0.104 3.896 16 H 0.081 0.919 17 C -0.158 4.158 18 C -0.144 4.144 19 C -0.069 4.069 20 C -0.063 4.063 21 O -0.071 6.071 22 C -0.115 4.115 23 C -0.235 4.235 24 C -0.213 4.213 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.244 0.756 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.136 0.864 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.249 0.751 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.872 -1.592 19.982 20.133 hybrid contribution 0.090 -0.374 -1.867 1.906 sum -1.782 -1.966 18.115 18.309 Atomic orbital electron populations 1.21514 0.95275 0.99047 1.01478 1.18796 0.95109 0.95933 0.89802 0.94172 1.21239 1.31589 1.12690 0.91156 0.93503 1.25593 0.95197 0.95752 1.01380 1.69944 1.37150 1.23572 1.24348 0.85661 0.78682 0.78673 0.78908 1.20326 1.19776 1.20167 1.21482 0.78031 0.83605 0.85549 1.90504 1.39941 1.28465 1.87441 1.46029 1.54297 1.32021 1.04581 1.19375 0.94334 0.90352 0.85568 0.91940 1.21924 1.04239 0.97158 0.92511 1.21585 0.96463 0.99089 0.97220 1.20468 0.99026 0.96804 0.90589 1.23059 0.94996 0.90394 0.97843 1.83871 1.53707 1.39783 1.29774 1.24493 1.04425 1.02726 0.79819 1.21586 1.02575 0.99093 1.00269 1.20744 1.05307 1.01738 0.93493 0.93374 0.91036 0.96323 0.92584 0.75594 0.89622 0.89456 0.86353 0.91749 0.87814 0.87413 0.75100 0.86866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.87 71.98 0.64 -4.81 16 2 C 0.02 1.28 2.64 -12.28 -0.03 1.25 16 3 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.53 -31.33 8.37 25.60 0.21 -31.11 16 5 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 6 C 0.02 1.13 5.30 84.65 0.45 1.58 16 7 N -0.91 -51.91 11.32 21.45 0.24 -51.66 16 8 Si 0.96 45.75 29.54 68.60 2.03 47.78 16 9 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 C 0.52 24.89 6.48 87.66 0.57 25.45 16 13 O -0.58 -32.15 14.46 -3.03 -0.04 -32.20 16 14 N -0.72 -25.71 4.91 -445.53 -2.19 -27.89 16 15 C 0.21 6.50 2.82 44.36 0.13 6.62 16 16 H 0.06 2.30 7.57 -2.39 -0.02 2.28 16 17 C -0.12 -2.32 5.41 30.77 0.17 -2.15 16 18 C -0.11 -1.46 5.89 30.75 0.18 -1.28 16 19 C -0.03 -0.48 6.30 30.03 0.19 -0.29 16 20 C -0.01 -0.30 7.23 25.00 0.18 -0.12 16 21 O -0.18 -4.77 10.64 0.36 0.00 -4.77 16 22 C -0.05 -1.36 12.10 67.02 0.81 -0.55 16 23 C -0.22 -7.80 10.31 22.06 0.23 -7.57 16 24 C -0.21 -6.78 5.62 -20.05 -0.11 -6.89 16 25 H 0.05 1.86 7.56 -2.38 -0.02 1.85 16 26 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 27 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.41 12.35 8.02 -92.71 -0.74 11.61 16 30 H 0.09 1.44 8.10 -2.39 -0.02 1.42 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.06 1.02 8.11 -2.38 -0.02 1.00 16 34 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 1.20 8.14 -2.38 -0.02 1.19 16 36 H 0.23 4.66 8.06 -2.91 -0.02 4.64 16 37 H 0.11 4.94 7.21 -2.91 -0.02 4.92 16 Total: -1.00 -73.67 304.15 3.98 -69.69 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.34 Total: 18.94 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 3.61 Total: -19.88 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -1.94 Total: -79.56 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.04 Total: -36.97 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -73.67 3.98 -69.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596731966.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.090 kcal (2) G-P(sol) polarization free energy of solvation -73.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds