Wall clock time and date at job start Mon Mar 30 2020 06:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46693 * 2 1 4 4 C 1.50695 * 109.46918 * 239.99618 * 2 1 3 5 5 H 1.08001 * 120.00119 * 275.10235 * 4 2 1 6 6 C 1.37877 * 120.00250 * 95.10692 * 4 2 1 7 7 N 1.31507 * 120.00706 * 184.90733 * 6 4 2 8 8 Si 1.86807 * 119.99617 * 4.90415 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.82552 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.82178 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.82491 * 8 6 4 12 12 C 1.50699 * 109.47040 * 119.99474 * 2 1 3 13 13 O 1.21283 * 120.00049 * 119.99996 * 12 2 1 14 14 N 1.34779 * 120.00366 * 300.00135 * 12 2 1 15 15 C 1.46497 * 119.99999 * 180.02562 * 14 12 2 16 16 H 1.09000 * 109.67919 * 325.52055 * 15 14 12 17 17 C 1.53404 * 109.68186 * 204.99911 * 15 14 12 18 18 C 1.53123 * 109.41647 * 190.67641 * 17 15 14 19 19 C 1.53331 * 109.54640 * 69.98197 * 18 17 15 20 20 C 1.50933 * 108.42862 * 309.97302 * 19 18 17 21 21 O 1.33833 * 127.80149 * 196.78006 * 20 19 18 22 22 C 1.34525 * 109.41882 * 179.97438 * 21 20 19 23 23 C 1.34766 * 108.48167 * 359.97438 * 22 21 20 24 24 C 1.34888 * 123.90177 * 16.74614 * 20 19 18 25 25 H 1.08997 * 109.46947 * 55.07979 * 1 2 3 26 26 H 1.08995 * 109.46913 * 295.07456 * 1 2 3 27 27 H 1.08998 * 109.46708 * 175.07670 * 1 2 3 28 28 H 0.96994 * 120.00587 * 179.97438 * 7 6 4 29 29 H 0.96999 * 119.99239 * 359.97438 * 14 12 2 30 30 H 1.09004 * 109.48161 * 310.65781 * 17 15 14 31 31 H 1.08998 * 109.48037 * 70.68251 * 17 15 14 32 32 H 1.08997 * 109.46017 * 190.00396 * 18 17 15 33 33 H 1.09003 * 109.45523 * 309.97109 * 18 17 15 34 34 H 1.08991 * 109.67772 * 69.70958 * 19 18 17 35 35 H 1.09003 * 109.67334 * 190.24332 * 19 18 17 36 36 H 1.07999 * 125.75445 * 180.02562 * 22 21 20 37 37 H 1.07997 * 126.67782 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1339 -1.7857 -1.2295 6 6 2.3623 0.0121 -2.3573 7 7 2.7081 -0.6129 -3.4615 8 14 2.3181 1.8792 -2.3158 9 1 3.6038 2.3929 -1.7788 10 1 2.1126 2.4002 -3.6911 11 1 1.2029 2.3287 -1.4443 12 6 2.0324 -0.7103 1.2305 13 8 2.7296 -1.6964 1.1194 14 7 1.7068 -0.2498 2.4546 15 6 2.1956 -0.9400 3.6508 16 1 2.2428 -2.0125 3.4622 17 6 1.2524 -0.6635 4.8286 18 6 1.8990 -1.1579 6.1255 19 6 3.0884 -0.2580 6.4812 20 6 3.9657 -0.1220 5.2606 21 8 5.2337 0.3026 5.2049 22 6 5.6585 0.2763 3.9288 23 6 4.6519 -0.1713 3.1526 24 6 3.5656 -0.4262 4.0089 25 1 -0.3633 0.5883 -0.8426 26 1 -0.3633 0.4355 0.9308 27 1 -0.3633 -1.0239 -0.0882 28 1 2.9399 -0.1046 -4.2544 29 1 1.1494 0.5391 2.5435 30 1 1.0657 0.4080 4.9010 31 1 0.3095 -1.1868 4.6698 32 1 1.1661 -1.1265 6.9316 33 1 2.2465 -2.1822 5.9904 34 1 2.7273 0.7245 6.7848 35 1 3.6583 -0.7074 7.2945 36 1 6.6408 0.5645 3.5847 37 1 4.6748 -0.3076 2.0815 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596731967.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:52 Heat of formation + Delta-G solvation = -60.203525 kcal Electronic energy + Delta-G solvation = -20157.530432 eV Core-core repulsion = 17092.839088 eV Total energy + Delta-G solvation = -3064.691343 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.68031 -40.68183 -38.19427 -35.63102 -34.98821 -33.69633 -33.06154 -30.43741 -29.37497 -27.23253 -25.12003 -23.70466 -23.15327 -22.31062 -20.93984 -19.92517 -19.14487 -18.30802 -17.61419 -17.34310 -16.77376 -16.16603 -15.72346 -15.67523 -15.29037 -14.88675 -14.46294 -14.44835 -14.06721 -13.85207 -13.68627 -13.21858 -13.08515 -13.07705 -12.96277 -12.62983 -12.19669 -12.14135 -11.84090 -11.77309 -11.63166 -11.25651 -10.77372 -10.70291 -10.37321 -10.03379 -9.23646 -8.28767 -6.34670 0.76220 1.32632 1.35664 1.45872 1.55619 1.92472 2.05208 2.33124 2.48662 3.08686 3.68814 3.80746 3.85360 4.10063 4.14912 4.25201 4.32532 4.40745 4.50635 4.59843 4.63157 4.73832 4.83421 4.91179 4.96866 5.00263 5.12528 5.15727 5.24486 5.30081 5.35752 5.50054 5.54765 5.58386 5.69444 6.17692 6.25282 6.67268 6.88100 7.26708 7.57785 8.89418 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026207 B = 0.005818 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.169298 B = 4811.730277 C = 5303.932216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.009 4.009 3 H 0.066 0.934 4 C -0.504 4.504 5 H 0.021 0.979 6 C 0.006 3.994 7 N -0.952 5.952 8 Si 0.945 3.055 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.224 1.224 12 C 0.521 3.479 13 O -0.581 6.581 14 N -0.716 5.716 15 C 0.209 3.791 16 H 0.061 0.939 17 C -0.119 4.119 18 C -0.107 4.107 19 C -0.032 4.032 20 C -0.010 4.010 21 O -0.176 6.176 22 C -0.048 4.048 23 C -0.220 4.220 24 C -0.212 4.212 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.037 0.963 28 H 0.267 0.733 29 H 0.411 0.589 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.062 0.938 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.232 0.768 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.357 7.121 23.838 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.031 4.031 3 H 0.084 0.916 4 C -0.543 4.543 5 H 0.040 0.960 6 C -0.190 4.190 7 N -0.592 5.592 8 Si 0.767 3.233 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.146 1.146 12 C 0.309 3.691 13 O -0.459 6.459 14 N -0.369 5.369 15 C 0.104 3.896 16 H 0.079 0.921 17 C -0.157 4.157 18 C -0.145 4.145 19 C -0.069 4.069 20 C -0.061 4.061 21 O -0.072 6.072 22 C -0.114 4.114 23 C -0.239 4.239 24 C -0.214 4.214 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.248 0.752 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.137 0.863 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.248 0.752 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.668 6.509 23.822 24.839 hybrid contribution 0.537 0.369 -1.589 1.718 sum -2.131 6.878 22.233 23.370 Atomic orbital electron populations 1.21820 0.93649 1.01148 1.01797 1.19336 0.96439 0.96688 0.90659 0.91574 1.20879 1.43338 0.93735 0.96323 0.96030 1.26050 0.94058 1.04452 0.94438 1.70067 1.48037 1.38315 1.02772 0.85790 0.80403 0.78745 0.78375 1.19826 1.20877 1.14624 1.21454 0.78406 0.83826 0.85411 1.90568 1.39274 1.28716 1.87348 1.46020 1.53977 1.32551 1.04362 1.19374 0.89056 0.95486 0.85693 0.92138 1.21922 0.97880 1.03669 0.92186 1.21594 0.96736 0.98731 0.97437 1.20480 0.92945 1.02984 0.90481 1.23090 0.83434 1.01748 0.97859 1.83891 1.26921 1.66693 1.29664 1.24478 1.01099 1.05985 0.79848 1.21615 0.95367 1.06628 1.00309 1.20757 0.98366 1.08850 0.93442 0.92547 0.90433 0.94328 0.92428 0.75204 0.89247 0.89199 0.86268 0.91963 0.87215 0.87966 0.75221 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 9.12 71.98 0.66 -4.13 16 2 C -0.01 -0.44 2.30 -12.29 -0.03 -0.47 16 3 H 0.07 2.90 5.29 -2.39 -0.01 2.89 16 4 C -0.50 -30.61 8.36 25.60 0.21 -30.40 16 5 H 0.02 1.53 7.61 -2.91 -0.02 1.51 16 6 C 0.01 0.38 5.47 84.66 0.46 0.84 16 7 N -0.95 -61.92 13.96 21.45 0.30 -61.62 16 8 Si 0.94 43.46 26.99 68.60 1.85 45.31 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.22 -8.77 6.82 99.48 0.68 -8.09 16 12 C 0.52 23.60 6.48 87.66 0.57 24.17 16 13 O -0.58 -32.41 14.77 -3.04 -0.04 -32.45 16 14 N -0.72 -23.47 4.88 -445.54 -2.17 -25.64 16 15 C 0.21 6.17 2.82 44.36 0.13 6.29 16 16 H 0.06 2.18 7.57 -2.39 -0.02 2.16 16 17 C -0.12 -2.03 5.41 30.77 0.17 -1.86 16 18 C -0.11 -1.35 5.89 30.75 0.18 -1.17 16 19 C -0.03 -0.45 6.30 30.03 0.19 -0.26 16 20 C -0.01 -0.25 7.22 24.99 0.18 -0.07 16 21 O -0.18 -4.72 10.65 -0.21 0.00 -4.72 16 22 C -0.05 -1.35 12.10 67.02 0.81 -0.54 16 23 C -0.22 -7.93 10.31 22.06 0.23 -7.70 16 24 C -0.21 -6.65 5.62 -20.06 -0.11 -6.76 16 25 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.08 2.15 7.43 -2.39 -0.02 2.13 16 27 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 29 H 0.41 10.39 7.96 -92.71 -0.74 9.65 16 30 H 0.09 1.24 8.10 -2.38 -0.02 1.23 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.94 8.11 -2.39 -0.02 0.93 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 35 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.23 4.72 8.06 -2.91 -0.02 4.69 16 37 H 0.11 4.93 7.21 -2.91 -0.02 4.91 16 Total: -1.00 -83.76 304.18 3.88 -79.88 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.31 Total: 21.32 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 3.64 Total: -22.07 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -1.87 Total: -87.27 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -0.05 Total: -37.17 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.85 Total: 45.31 kcal Total: -83.76 3.88 -79.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596731967.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.672 kcal (2) G-P(sol) polarization free energy of solvation -83.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds