Wall clock time and date at job start Mon Mar 30 2020 06:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 114.00106 * 2 1 4 4 C 1.50703 * 109.47259 * 179.97438 * 3 2 1 5 5 C 1.38298 * 119.96647 * 270.02208 * 4 3 2 6 6 C 1.38258 * 120.14476 * 180.02562 * 5 4 3 7 7 C 1.38139 * 120.06518 * 359.74759 * 6 5 4 8 8 C 1.38851 * 119.92870 * 0.48007 * 7 6 5 9 9 N 1.39928 * 120.06967 * 179.79497 * 8 7 6 10 10 C 1.34783 * 119.99845 * 326.44987 * 9 8 7 11 11 O 1.21289 * 120.00216 * 354.91553 * 10 9 8 12 12 C 1.50700 * 119.99978 * 174.92015 * 10 9 8 13 13 H 1.09000 * 109.46824 * 300.00271 * 12 10 9 14 14 C 1.53005 * 109.47051 * 59.99940 * 12 10 9 15 15 C 1.50691 * 109.47204 * 179.97438 * 12 10 9 16 16 H 1.08004 * 120.00031 * 359.97438 * 15 12 10 17 17 C 1.37876 * 120.00186 * 180.02562 * 15 12 10 18 18 N 1.31508 * 119.99878 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 120.00309 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.46998 * 59.99377 * 19 17 15 21 21 H 1.48500 * 109.47265 * 180.02562 * 19 17 15 22 22 H 1.48510 * 109.46758 * 300.00091 * 19 17 15 23 23 C 1.38093 * 119.95973 * 90.00119 * 4 3 2 24 24 H 1.08997 * 109.47158 * 60.00391 * 1 2 3 25 25 H 1.09006 * 109.46893 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47087 * 299.99926 * 1 2 3 27 27 H 1.09003 * 109.46895 * 59.99839 * 3 2 1 28 28 H 1.08998 * 109.46625 * 300.00061 * 3 2 1 29 29 H 1.08001 * 119.92656 * 359.97438 * 5 4 3 30 30 H 1.07999 * 119.96873 * 180.02562 * 6 5 4 31 31 H 1.08007 * 120.03545 * 180.25950 * 7 6 5 32 32 H 0.96994 * 119.99920 * 146.72593 * 9 8 7 33 33 H 1.09003 * 109.47169 * 300.00099 * 14 12 10 34 34 H 1.09002 * 109.46942 * 59.99918 * 14 12 10 35 35 H 1.09002 * 109.46809 * 179.97438 * 14 12 10 36 36 H 0.97004 * 120.00172 * 179.97438 * 18 17 15 37 37 H 1.08000 * 120.03510 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2007 1.1317 1.1990 6 6 5.5789 1.0231 1.2039 7 6 6.2727 0.9637 0.0108 8 6 5.5852 1.0232 -1.1940 9 7 6.2853 0.9676 -2.4043 10 6 7.5143 1.5132 -2.4975 11 8 7.9756 2.1322 -1.5620 12 6 8.3151 1.3541 -3.7641 13 1 8.4819 0.2945 -3.9578 14 6 7.5468 1.9717 -4.9343 15 6 9.6417 2.0522 -3.6106 16 1 9.8809 2.5606 -2.6883 17 6 10.5498 2.0428 -4.6481 18 7 10.2585 1.4242 -5.7714 19 14 12.1947 2.9076 -4.4576 20 1 12.9406 2.3078 -3.3223 21 1 12.9833 2.7520 -5.7062 22 1 11.9672 4.3511 -4.1929 23 6 4.2005 1.1319 -1.1955 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.6602 1.1747 2.1331 30 1 6.1134 0.9801 2.1414 31 1 7.3491 0.8746 0.0152 32 1 5.8846 0.5400 -3.1772 33 1 6.5870 1.4672 -5.0455 34 1 7.3799 3.0313 -4.7405 35 1 8.1263 1.8571 -5.8504 36 1 10.8972 1.4179 -6.5014 37 1 3.6625 1.1748 -2.1310 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596752325.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:15 Heat of formation + Delta-G solvation = -61.441330 kcal Electronic energy + Delta-G solvation = -19134.349664 eV Core-core repulsion = 16069.604646 eV Total energy + Delta-G solvation = -3064.745019 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.05097 -38.57552 -37.42246 -34.23453 -33.84278 -31.76079 -30.75479 -29.05484 -27.32888 -25.40074 -25.19437 -23.39704 -22.14393 -21.15349 -19.21858 -17.40842 -16.55998 -16.33912 -16.23789 -15.75957 -15.74498 -14.94987 -14.71568 -14.44736 -13.89237 -13.68556 -13.07403 -12.71388 -12.65073 -12.42868 -12.37110 -11.71009 -11.50690 -11.45961 -11.08732 -10.98448 -10.79186 -10.72512 -10.34725 -10.01983 -9.90785 -9.85514 -9.05130 -8.81469 -8.61855 -8.37769 -7.73667 -6.07654 -4.11574 1.44789 1.55055 3.34176 3.36867 3.40577 3.41915 3.69542 3.74934 4.20291 4.43834 4.79278 4.86932 5.08793 5.10578 5.16491 5.25354 5.25813 5.34188 5.41684 5.54972 5.71341 5.85381 6.02193 6.19543 6.52229 6.56345 6.63027 6.71909 6.75159 6.84954 6.86112 6.94333 7.33114 7.41830 7.69644 7.90000 8.04147 8.30722 8.96284 9.03036 9.54221 10.99956 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040927 B = 0.003835 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.982099 B = 7299.924933 C = 7822.602763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.106 3.894 4 C -0.078 4.078 5 C -0.128 4.128 6 C -0.103 4.103 7 C -0.118 4.118 8 C 0.164 3.836 9 N -0.689 5.689 10 C 0.519 3.481 11 O -0.523 6.523 12 C 0.031 3.969 13 H 0.057 0.943 14 C -0.135 4.135 15 C -0.505 4.505 16 H 0.075 0.925 17 C 0.060 3.940 18 N -0.896 5.896 19 Si 0.902 3.098 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.276 1.276 23 C -0.136 4.136 24 H 0.041 0.959 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.137 0.863 32 H 0.408 0.592 33 H 0.012 0.988 34 H 0.033 0.967 35 H 0.096 0.904 36 H 0.262 0.738 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.019 -2.415 8.758 19.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.030 3.970 4 C -0.079 4.079 5 C -0.147 4.147 6 C -0.122 4.122 7 C -0.138 4.138 8 C 0.068 3.932 9 N -0.335 5.335 10 C 0.310 3.690 11 O -0.397 6.397 12 C 0.010 3.990 13 H 0.075 0.925 14 C -0.193 4.193 15 C -0.543 4.543 16 H 0.093 0.907 17 C -0.141 4.141 18 N -0.535 5.535 19 Si 0.730 3.270 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.157 4.157 24 H 0.059 0.941 25 H 0.104 0.896 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.136 0.864 30 H 0.142 0.858 31 H 0.155 0.845 32 H 0.243 0.757 33 H 0.031 0.969 34 H 0.052 0.948 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.391 -2.165 9.183 18.912 hybrid contribution 0.389 0.472 -0.407 0.735 sum -16.002 -1.693 8.776 18.328 Atomic orbital electron populations 1.22748 0.81262 1.02741 0.99895 1.87996 1.19348 1.27647 1.95377 1.21328 0.90068 0.84877 1.00723 1.19215 0.93389 1.02170 0.93138 1.20868 0.94256 1.02572 0.97011 1.20988 0.93843 0.99575 0.97756 1.21311 1.01396 1.00188 0.90908 1.17889 0.90769 0.97520 0.86995 1.44161 1.18843 1.59086 1.11394 1.22294 0.79320 0.75628 0.91763 1.90547 1.69160 1.39196 1.40786 1.18910 0.93864 0.99372 0.86822 0.92521 1.21781 0.96583 0.98350 1.02578 1.21081 0.98289 1.33817 1.01137 0.90734 1.24943 0.98711 0.95416 0.95052 1.69852 1.35940 1.43286 1.04436 0.86482 0.83115 0.80182 0.77235 1.20128 1.21329 1.20158 1.20740 0.92613 1.04350 0.97996 0.94079 0.89639 0.94153 0.92488 0.92494 0.86399 0.85845 0.84487 0.75675 0.96858 0.94829 0.88577 0.92795 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.50 10.69 -35.23 -0.38 -4.87 16 3 C 0.11 1.14 6.06 36.01 0.22 1.36 16 4 C -0.08 -1.05 5.51 -104.65 -0.58 -1.63 16 5 C -0.13 -1.68 9.70 -39.55 -0.38 -2.07 16 6 C -0.10 -1.48 10.04 -39.61 -0.40 -1.88 16 7 C -0.12 -2.05 8.66 -39.39 -0.34 -2.39 16 8 C 0.16 2.82 6.28 -83.69 -0.53 2.30 16 9 N -0.69 -12.47 5.27 -9.86 -0.05 -12.52 16 10 C 0.52 11.71 6.89 -10.98 -0.08 11.63 16 11 O -0.52 -13.29 13.15 5.55 0.07 -13.22 16 12 C 0.03 0.77 2.65 -92.93 -0.25 0.52 16 13 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 14 C -0.13 -3.04 8.86 37.16 0.33 -2.71 16 15 C -0.50 -14.12 8.37 -34.44 -0.29 -14.41 16 16 H 0.07 2.19 6.75 -52.48 -0.35 1.84 16 17 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 18 N -0.90 -24.85 11.32 55.43 0.63 -24.23 16 19 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.14 -2.00 9.62 -39.39 -0.38 -2.38 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.14 2.66 6.43 -52.48 -0.34 2.33 16 32 H 0.41 6.24 8.09 -40.82 -0.33 5.91 16 33 H 0.01 0.23 7.45 -51.93 -0.39 -0.15 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.10 2.38 6.07 -51.93 -0.32 2.07 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 314.38 15.07 4.74 4.74 Total: -1.00 -31.24 314.38 -6.74 -37.98 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.08 Total: 4.26 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -1.65 Total: -8.76 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.58 Total: -36.75 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.30 Total: -18.09 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.24 -6.74 -37.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596752325.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.459 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds