Wall clock time and date at job start Mon Mar 30 2020 06:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 114.00106 * 2 1 4 4 C 1.50703 * 109.47259 * 179.97438 * 3 2 1 5 5 C 1.38298 * 119.96647 * 270.02208 * 4 3 2 6 6 C 1.38258 * 120.14476 * 180.02562 * 5 4 3 7 7 C 1.38139 * 120.06518 * 359.74759 * 6 5 4 8 8 C 1.38851 * 119.92870 * 0.48007 * 7 6 5 9 9 N 1.39928 * 120.06967 * 179.79497 * 8 7 6 10 10 C 1.34783 * 119.99845 * 326.44987 * 9 8 7 11 11 O 1.21289 * 120.00216 * 354.91553 * 10 9 8 12 12 C 1.50700 * 119.99978 * 174.92015 * 10 9 8 13 13 H 1.09000 * 109.46824 * 300.00271 * 12 10 9 14 14 C 1.53005 * 109.47051 * 59.99940 * 12 10 9 15 15 C 1.50691 * 109.47204 * 179.97438 * 12 10 9 16 16 H 1.08004 * 120.00031 * 359.97438 * 15 12 10 17 17 C 1.37876 * 120.00186 * 180.02562 * 15 12 10 18 18 N 1.31508 * 119.99878 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 120.00309 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.46998 * 59.99377 * 19 17 15 21 21 H 1.48500 * 109.47265 * 180.02562 * 19 17 15 22 22 H 1.48510 * 109.46758 * 300.00091 * 19 17 15 23 23 C 1.38093 * 119.95973 * 90.00119 * 4 3 2 24 24 H 1.08997 * 109.47158 * 60.00391 * 1 2 3 25 25 H 1.09006 * 109.46893 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47087 * 299.99926 * 1 2 3 27 27 H 1.09003 * 109.46895 * 59.99839 * 3 2 1 28 28 H 1.08998 * 109.46625 * 300.00061 * 3 2 1 29 29 H 1.08001 * 119.92656 * 359.97438 * 5 4 3 30 30 H 1.07999 * 119.96873 * 180.02562 * 6 5 4 31 31 H 1.08007 * 120.03545 * 180.25950 * 7 6 5 32 32 H 0.96994 * 119.99920 * 146.72593 * 9 8 7 33 33 H 1.09003 * 109.47169 * 300.00099 * 14 12 10 34 34 H 1.09002 * 109.46942 * 59.99918 * 14 12 10 35 35 H 1.09002 * 109.46809 * 179.97438 * 14 12 10 36 36 H 0.97004 * 120.00172 * 179.97438 * 18 17 15 37 37 H 1.08000 * 120.03510 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2007 1.1317 1.1990 6 6 5.5789 1.0231 1.2039 7 6 6.2727 0.9637 0.0108 8 6 5.5852 1.0232 -1.1940 9 7 6.2853 0.9676 -2.4043 10 6 7.5143 1.5132 -2.4975 11 8 7.9756 2.1322 -1.5620 12 6 8.3151 1.3541 -3.7641 13 1 8.4819 0.2945 -3.9578 14 6 7.5468 1.9717 -4.9343 15 6 9.6417 2.0522 -3.6106 16 1 9.8809 2.5606 -2.6883 17 6 10.5498 2.0428 -4.6481 18 7 10.2585 1.4242 -5.7714 19 14 12.1947 2.9076 -4.4576 20 1 12.9406 2.3078 -3.3223 21 1 12.9833 2.7520 -5.7062 22 1 11.9672 4.3511 -4.1929 23 6 4.2005 1.1319 -1.1955 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.6602 1.1747 2.1331 30 1 6.1134 0.9801 2.1414 31 1 7.3491 0.8746 0.0152 32 1 5.8846 0.5400 -3.1772 33 1 6.5870 1.4672 -5.0455 34 1 7.3799 3.0313 -4.7405 35 1 8.1263 1.8571 -5.8504 36 1 10.8972 1.4179 -6.5014 37 1 3.6625 1.1748 -2.1310 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596752325.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:15 Heat of formation + Delta-G solvation = -81.443416 kcal Electronic energy + Delta-G solvation = -19135.217020 eV Core-core repulsion = 16069.604646 eV Total energy + Delta-G solvation = -3065.612374 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.48969 -39.83434 -38.39827 -35.85607 -35.71775 -32.94504 -32.54211 -30.41408 -28.10373 -27.23568 -26.21661 -25.07791 -23.33008 -22.61121 -20.79190 -18.82941 -18.26106 -17.61890 -17.28444 -17.09524 -16.82764 -16.44964 -16.08527 -15.84875 -15.34159 -15.03793 -14.59437 -14.44235 -13.86465 -13.69234 -13.34802 -13.11197 -12.98627 -12.80852 -12.64941 -12.46541 -12.30007 -12.24473 -12.12532 -12.02309 -11.27310 -11.08154 -10.64682 -10.60012 -10.37024 -9.82818 -9.06106 -8.17738 -6.28651 0.28178 0.37008 1.40871 1.42105 1.50658 1.79721 2.20666 2.46059 2.67752 3.12270 3.22083 3.87278 3.93183 4.11302 4.19656 4.35305 4.42486 4.44915 4.58121 4.61741 4.64189 4.70452 4.78381 4.89204 4.91839 4.94488 5.03531 5.37147 5.41600 5.45950 5.56763 5.61706 5.71894 5.89858 6.08865 6.16459 6.25277 6.59872 6.79937 7.30955 7.42471 8.88085 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040927 B = 0.003835 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.982099 B = 7299.924933 C = 7822.602763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.107 3.893 4 C -0.080 4.080 5 C -0.119 4.119 6 C -0.105 4.105 7 C -0.145 4.145 8 C 0.133 3.867 9 N -0.672 5.672 10 C 0.522 3.478 11 O -0.561 6.561 12 C 0.028 3.972 13 H 0.046 0.954 14 C -0.123 4.123 15 C -0.533 4.533 16 H 0.050 0.950 17 C 0.022 3.978 18 N -0.910 5.910 19 Si 0.956 3.044 20 H -0.276 1.276 21 H -0.274 1.274 22 H -0.276 1.276 23 C -0.132 4.132 24 H 0.051 0.949 25 H 0.093 0.907 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.105 0.895 32 H 0.420 0.580 33 H 0.054 0.946 34 H 0.024 0.976 35 H 0.074 0.926 36 H 0.266 0.734 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.340 -2.330 9.405 21.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.331 6.331 3 C 0.031 3.969 4 C -0.081 4.081 5 C -0.138 4.138 6 C -0.123 4.123 7 C -0.165 4.165 8 C 0.039 3.961 9 N -0.318 5.318 10 C 0.313 3.687 11 O -0.438 6.438 12 C 0.006 3.994 13 H 0.064 0.936 14 C -0.181 4.181 15 C -0.571 4.571 16 H 0.069 0.931 17 C -0.178 4.178 18 N -0.549 5.549 19 Si 0.782 3.218 20 H -0.202 1.202 21 H -0.199 1.199 22 H -0.201 1.201 23 C -0.153 4.153 24 H 0.069 0.931 25 H 0.112 0.888 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.169 0.831 30 H 0.162 0.838 31 H 0.124 0.876 32 H 0.259 0.741 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.765 -2.107 9.821 21.284 hybrid contribution 0.975 0.391 -0.526 1.174 sum -17.791 -1.717 9.295 20.146 Atomic orbital electron populations 1.22947 0.79293 1.03789 1.01124 1.87943 1.21512 1.28040 1.95650 1.21375 0.87947 0.85056 1.02502 1.19652 0.95298 1.00490 0.92628 1.21275 0.93650 1.00377 0.98465 1.21236 0.94774 0.98854 0.97429 1.21256 1.00221 1.02423 0.92632 1.18085 0.91888 0.99987 0.86134 1.43738 1.17434 1.58098 1.12561 1.21832 0.80538 0.75756 0.90578 1.90525 1.70444 1.41211 1.41586 1.18826 0.93499 0.98330 0.88708 0.93621 1.21601 0.97934 0.98113 1.00414 1.21244 1.00579 1.34727 1.00570 0.93146 1.25584 1.01518 0.95935 0.94762 1.69931 1.36806 1.43506 1.04674 0.85641 0.79614 0.79015 0.77556 1.20166 1.19876 1.20140 1.20957 0.91333 1.03341 0.99650 0.93067 0.88810 0.92671 0.90293 0.91217 0.83144 0.83786 0.87642 0.74141 0.92754 0.95672 0.90763 0.92471 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.54 16 2 O -0.41 -8.29 10.69 -148.98 -1.59 -9.88 16 3 C 0.11 1.91 6.06 71.24 0.43 2.34 16 4 C -0.08 -1.92 5.51 -19.88 -0.11 -2.03 16 5 C -0.12 -2.79 9.70 22.29 0.22 -2.58 16 6 C -0.10 -2.90 10.04 22.25 0.22 -2.67 16 7 C -0.14 -5.16 8.66 22.39 0.19 -4.97 16 8 C 0.13 4.58 6.28 38.15 0.24 4.82 16 9 N -0.67 -24.47 5.27 -303.49 -1.60 -26.07 16 10 C 0.52 24.32 6.89 87.66 0.60 24.92 16 11 O -0.56 -29.86 13.15 -3.06 -0.04 -29.90 16 12 C 0.03 1.38 2.65 -12.29 -0.03 1.35 16 13 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 14 C -0.12 -5.53 8.86 71.98 0.64 -4.89 16 15 C -0.53 -30.81 8.37 25.60 0.21 -30.59 16 16 H 0.05 3.10 6.75 -2.91 -0.02 3.08 16 17 C 0.02 1.20 5.30 84.66 0.45 1.65 16 18 N -0.91 -50.88 11.32 21.45 0.24 -50.64 16 19 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 23 C -0.13 -3.64 9.62 22.39 0.22 -3.43 16 24 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 28 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 29 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 30 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 31 H 0.11 4.39 6.43 -2.91 -0.02 4.37 16 32 H 0.42 12.56 8.09 -92.71 -0.75 11.81 16 33 H 0.05 1.94 7.45 -2.39 -0.02 1.92 16 34 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 36 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 37 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -69.15 314.38 3.89 -65.26 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.32 Total: 18.89 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 4.53 Total: -14.53 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -1.36 Total: -76.71 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -1.63 Total: -39.78 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -69.15 3.89 -65.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596752325.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.182 kcal (2) G-P(sol) polarization free energy of solvation -69.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds