Wall clock time and date at job start Mon Mar 30 2020 06:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42891 * 113.99910 * 2 1 4 4 C 1.50699 * 109.47222 * 179.97438 * 3 2 1 5 5 C 1.38302 * 119.96925 * 270.02269 * 4 3 2 6 6 C 1.38256 * 120.14797 * 179.97438 * 5 4 3 7 7 C 1.38142 * 120.06675 * 359.67821 * 6 5 4 8 8 C 1.38850 * 119.92915 * 0.59389 * 7 6 5 9 9 N 1.39919 * 120.07304 * 179.70229 * 8 7 6 10 10 C 1.34784 * 119.99757 * 326.55213 * 9 8 7 11 11 O 1.21284 * 120.00055 * 354.72157 * 10 9 8 12 12 C 1.50697 * 119.99994 * 174.72464 * 10 9 8 13 13 H 1.09006 * 109.47234 * 59.99769 * 12 10 9 14 14 C 1.53005 * 109.47005 * 300.00224 * 12 10 9 15 15 C 1.50699 * 109.47194 * 180.02562 * 12 10 9 16 16 H 1.07997 * 120.00034 * 359.97438 * 15 12 10 17 17 C 1.37874 * 119.99867 * 179.97438 * 15 12 10 18 18 N 1.31521 * 120.00366 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 120.00018 * 179.97438 * 17 15 12 20 20 H 1.48490 * 109.46922 * 89.99847 * 19 17 15 21 21 H 1.48501 * 109.47067 * 210.00297 * 19 17 15 22 22 H 1.48500 * 109.46915 * 329.99897 * 19 17 15 23 23 C 1.38096 * 119.96480 * 89.99577 * 4 3 2 24 24 H 1.09000 * 109.47210 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47517 * 300.00665 * 1 2 3 26 26 H 1.09006 * 109.47018 * 60.00815 * 1 2 3 27 27 H 1.09001 * 109.47528 * 59.99214 * 3 2 1 28 28 H 1.09007 * 109.47121 * 299.99337 * 3 2 1 29 29 H 1.08002 * 119.92469 * 359.97438 * 5 4 3 30 30 H 1.07995 * 119.96645 * 179.97438 * 6 5 4 31 31 H 1.07998 * 120.03366 * 180.31928 * 7 6 5 32 32 H 0.97001 * 120.00297 * 146.55473 * 9 8 7 33 33 H 1.08994 * 109.47257 * 60.00097 * 14 12 10 34 34 H 1.09005 * 109.47088 * 179.97438 * 14 12 10 35 35 H 1.08996 * 109.46696 * 299.99810 * 14 12 10 36 36 H 0.96997 * 119.99831 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.03351 * 0.04585 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2007 1.1317 1.1990 6 6 5.5789 1.0220 1.2039 7 6 6.2725 0.9601 0.0109 8 6 5.5851 1.0206 -1.1940 9 7 6.2851 0.9644 -2.4042 10 6 7.5155 1.5069 -2.4968 11 8 7.9769 2.1266 -1.5619 12 6 8.3179 1.3433 -3.7618 13 1 7.7728 1.7829 -4.5972 14 6 8.5489 -0.1452 -4.0304 15 6 9.6465 2.0375 -3.6073 16 1 9.8857 2.5466 -2.6854 17 6 10.5565 2.0227 -4.6430 18 7 10.2650 1.4032 -5.7659 19 14 12.2032 2.8839 -4.4518 20 1 13.1974 1.9325 -3.8939 21 1 12.6675 3.3642 -5.7780 22 1 12.0534 4.0397 -3.5314 23 6 4.2006 1.1317 -1.1954 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 3.6602 1.1746 2.1331 30 1 6.1133 0.9799 2.1414 31 1 7.3486 0.8693 0.0153 32 1 5.8850 0.5352 -3.1766 33 1 7.5882 -0.6476 -4.1420 34 1 9.1289 -0.2635 -4.9457 35 1 9.0940 -0.5847 -3.1951 36 1 10.9052 1.3931 -6.4945 37 1 3.6626 1.1748 -2.1310 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596752326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:18 Heat of formation + Delta-G solvation = -61.464166 kcal Electronic energy + Delta-G solvation = -19136.429842 eV Core-core repulsion = 16071.683833 eV Total energy + Delta-G solvation = -3064.746009 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.05077 -38.57575 -37.42197 -34.23489 -33.83550 -31.75752 -30.74963 -29.05762 -27.33280 -25.40715 -25.18364 -23.40296 -22.12558 -21.16796 -19.20880 -17.39589 -16.56159 -16.26239 -16.23710 -15.83428 -15.75387 -14.94644 -14.79284 -14.46392 -13.87434 -13.58285 -13.08368 -12.78782 -12.63467 -12.39554 -12.33977 -11.66461 -11.57788 -11.45205 -11.07377 -11.00152 -10.77959 -10.70239 -10.36294 -10.02092 -9.90712 -9.84539 -9.04133 -8.81487 -8.61384 -8.38402 -7.73311 -6.07747 -4.11575 1.44865 1.55065 3.31697 3.37595 3.40687 3.43956 3.68131 3.76803 4.20203 4.43946 4.79292 4.86914 5.08745 5.10473 5.16464 5.24871 5.26131 5.34242 5.41673 5.54931 5.71256 5.85575 6.02158 6.19840 6.54122 6.56391 6.64545 6.72109 6.76404 6.83413 6.87301 6.94412 7.34466 7.41243 7.69241 7.90141 8.04878 8.30628 8.96685 9.03097 9.54301 10.99884 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.041182 B = 0.003801 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.748086 B = 7364.653747 C = 7777.444336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.106 3.894 4 C -0.078 4.078 5 C -0.128 4.128 6 C -0.103 4.103 7 C -0.117 4.117 8 C 0.164 3.836 9 N -0.689 5.689 10 C 0.519 3.481 11 O -0.523 6.523 12 C 0.031 3.969 13 H 0.055 0.945 14 C -0.134 4.134 15 C -0.504 4.504 16 H 0.075 0.925 17 C 0.059 3.941 18 N -0.896 5.896 19 Si 0.901 3.099 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.272 1.272 23 C -0.136 4.136 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.137 0.863 32 H 0.407 0.593 33 H 0.013 0.987 34 H 0.095 0.905 35 H 0.032 0.968 36 H 0.262 0.738 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.823 -2.850 8.966 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.030 3.970 4 C -0.079 4.079 5 C -0.147 4.147 6 C -0.122 4.122 7 C -0.138 4.138 8 C 0.068 3.932 9 N -0.334 5.334 10 C 0.310 3.690 11 O -0.397 6.397 12 C 0.010 3.990 13 H 0.073 0.927 14 C -0.192 4.192 15 C -0.542 4.542 16 H 0.093 0.907 17 C -0.142 4.142 18 N -0.535 5.535 19 Si 0.729 3.271 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.157 4.157 24 H 0.104 0.896 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.155 0.845 32 H 0.243 0.757 33 H 0.032 0.968 34 H 0.114 0.886 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.200 -2.588 9.393 18.904 hybrid contribution 0.404 0.436 -0.409 0.722 sum -15.796 -2.152 8.983 18.298 Atomic orbital electron populations 1.22749 0.81260 1.02742 0.99895 1.87995 1.19347 1.27645 1.95375 1.21324 0.90069 0.84879 1.00719 1.19215 0.93386 1.02181 0.93139 1.20868 0.94253 1.02574 0.97012 1.20987 0.93845 0.99578 0.97758 1.21310 1.01394 1.00155 0.90912 1.17885 0.90765 0.97512 0.86995 1.44150 1.18724 1.59102 1.11459 1.22299 0.79264 0.75530 0.91929 1.90547 1.69181 1.39192 1.40762 1.18910 0.95286 0.95909 0.88896 0.92697 1.21765 0.98632 0.94977 1.03800 1.21120 0.98626 1.33118 1.01344 0.90684 1.24948 0.98763 0.95449 0.95003 1.69867 1.35949 1.43215 1.04476 0.86428 0.83384 0.79992 0.77292 1.20614 1.21251 1.19703 1.20739 0.92607 1.04371 0.97994 0.89639 0.94151 0.94079 0.92491 0.92498 0.86403 0.85855 0.84506 0.75696 0.96769 0.88599 0.94844 0.92863 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.49 10.69 -35.23 -0.38 -4.87 16 3 C 0.11 1.14 6.06 36.01 0.22 1.36 16 4 C -0.08 -1.05 5.51 -104.65 -0.58 -1.63 16 5 C -0.13 -1.68 9.70 -39.55 -0.38 -2.07 16 6 C -0.10 -1.49 10.04 -39.61 -0.40 -1.88 16 7 C -0.12 -2.05 8.66 -39.39 -0.34 -2.39 16 8 C 0.16 2.82 6.28 -83.70 -0.53 2.30 16 9 N -0.69 -12.43 5.19 -9.86 -0.05 -12.49 16 10 C 0.52 11.69 6.89 -10.98 -0.08 11.62 16 11 O -0.52 -13.29 13.16 5.55 0.07 -13.22 16 12 C 0.03 0.76 2.64 -92.92 -0.25 0.51 16 13 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 14 C -0.13 -3.02 8.87 37.16 0.33 -2.69 16 15 C -0.50 -14.08 8.37 -34.44 -0.29 -14.37 16 16 H 0.08 2.21 6.75 -52.49 -0.35 1.86 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 18 N -0.90 -24.85 11.32 55.43 0.63 -24.22 16 19 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 C -0.14 -1.99 9.62 -39.39 -0.38 -2.37 16 24 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.06 0.54 8.09 -51.92 -0.42 0.12 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.14 2.67 6.43 -52.49 -0.34 2.34 16 32 H 0.41 6.20 8.41 -40.82 -0.34 5.86 16 33 H 0.01 0.26 7.69 -51.93 -0.40 -0.14 16 34 H 0.10 2.38 6.07 -51.93 -0.32 2.07 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 314.85 15.07 4.74 4.74 Total: -1.00 -31.30 314.85 -6.76 -38.05 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.11 Total: 4.13 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.65 Total: -8.74 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.58 Total: -36.71 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.30 Total: -18.08 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.30 -6.76 -38.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596752326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.413 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds