Wall clock time and date at job start Mon Mar 30 2020 06:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42891 * 113.99910 * 2 1 4 4 C 1.50699 * 109.47222 * 179.97438 * 3 2 1 5 5 C 1.38302 * 119.96925 * 270.02269 * 4 3 2 6 6 C 1.38256 * 120.14797 * 179.97438 * 5 4 3 7 7 C 1.38142 * 120.06675 * 359.67821 * 6 5 4 8 8 C 1.38850 * 119.92915 * 0.59389 * 7 6 5 9 9 N 1.39919 * 120.07304 * 179.70229 * 8 7 6 10 10 C 1.34784 * 119.99757 * 326.55213 * 9 8 7 11 11 O 1.21284 * 120.00055 * 354.72157 * 10 9 8 12 12 C 1.50697 * 119.99994 * 174.72464 * 10 9 8 13 13 H 1.09006 * 109.47234 * 59.99769 * 12 10 9 14 14 C 1.53005 * 109.47005 * 300.00224 * 12 10 9 15 15 C 1.50699 * 109.47194 * 180.02562 * 12 10 9 16 16 H 1.07997 * 120.00034 * 359.97438 * 15 12 10 17 17 C 1.37874 * 119.99867 * 179.97438 * 15 12 10 18 18 N 1.31521 * 120.00366 * 0.02562 * 17 15 12 19 19 Si 1.86805 * 120.00018 * 179.97438 * 17 15 12 20 20 H 1.48490 * 109.46922 * 89.99847 * 19 17 15 21 21 H 1.48501 * 109.47067 * 210.00297 * 19 17 15 22 22 H 1.48500 * 109.46915 * 329.99897 * 19 17 15 23 23 C 1.38096 * 119.96480 * 89.99577 * 4 3 2 24 24 H 1.09000 * 109.47210 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47517 * 300.00665 * 1 2 3 26 26 H 1.09006 * 109.47018 * 60.00815 * 1 2 3 27 27 H 1.09001 * 109.47528 * 59.99214 * 3 2 1 28 28 H 1.09007 * 109.47121 * 299.99337 * 3 2 1 29 29 H 1.08002 * 119.92469 * 359.97438 * 5 4 3 30 30 H 1.07995 * 119.96645 * 179.97438 * 6 5 4 31 31 H 1.07998 * 120.03366 * 180.31928 * 7 6 5 32 32 H 0.97001 * 120.00297 * 146.55473 * 9 8 7 33 33 H 1.08994 * 109.47257 * 60.00097 * 14 12 10 34 34 H 1.09005 * 109.47088 * 179.97438 * 14 12 10 35 35 H 1.08996 * 109.46696 * 299.99810 * 14 12 10 36 36 H 0.96997 * 119.99831 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.03351 * 0.04585 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2007 1.1317 1.1990 6 6 5.5789 1.0220 1.2039 7 6 6.2725 0.9601 0.0109 8 6 5.5851 1.0206 -1.1940 9 7 6.2851 0.9644 -2.4042 10 6 7.5155 1.5069 -2.4968 11 8 7.9769 2.1266 -1.5619 12 6 8.3179 1.3433 -3.7618 13 1 7.7728 1.7829 -4.5972 14 6 8.5489 -0.1452 -4.0304 15 6 9.6465 2.0375 -3.6073 16 1 9.8857 2.5466 -2.6854 17 6 10.5565 2.0227 -4.6430 18 7 10.2650 1.4032 -5.7659 19 14 12.2032 2.8839 -4.4518 20 1 13.1974 1.9325 -3.8939 21 1 12.6675 3.3642 -5.7780 22 1 12.0534 4.0397 -3.5314 23 6 4.2006 1.1317 -1.1954 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 3.6602 1.1746 2.1331 30 1 6.1133 0.9799 2.1414 31 1 7.3486 0.8693 0.0153 32 1 5.8850 0.5352 -3.1766 33 1 7.5882 -0.6476 -4.1420 34 1 9.1289 -0.2635 -4.9457 35 1 9.0940 -0.5847 -3.1951 36 1 10.9052 1.3931 -6.4945 37 1 3.6626 1.1748 -2.1310 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596752326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:17 Heat of formation + Delta-G solvation = -81.484250 kcal Electronic energy + Delta-G solvation = -19137.297978 eV Core-core repulsion = 16071.683833 eV Total energy + Delta-G solvation = -3065.614145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.48906 -39.83344 -38.39844 -35.85419 -35.71483 -32.93100 -32.55042 -30.41751 -28.10720 -27.23956 -26.21408 -25.08418 -23.31121 -22.63051 -20.77626 -18.82927 -18.20465 -17.64059 -17.28496 -17.11273 -16.87396 -16.47850 -16.07554 -15.90362 -15.23635 -14.94910 -14.63019 -14.52575 -13.87764 -13.55457 -13.44968 -13.11147 -12.98692 -12.75984 -12.62652 -12.55105 -12.28970 -12.23940 -12.13552 -12.02806 -11.25270 -11.08747 -10.64049 -10.60065 -10.37690 -9.82681 -9.05794 -8.17846 -6.28646 0.28281 0.37044 1.40198 1.40982 1.52631 1.79979 2.20866 2.46173 2.67910 3.12123 3.22116 3.87308 3.93222 4.11175 4.19717 4.35312 4.42549 4.44907 4.58178 4.61659 4.64089 4.70615 4.78377 4.89778 4.91830 4.95408 5.02741 5.35898 5.41927 5.47029 5.57052 5.62018 5.71140 5.88943 6.09057 6.16333 6.25261 6.60074 6.80231 7.31113 7.42615 8.88142 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.041182 B = 0.003801 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.748086 B = 7364.653747 C = 7777.444336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.107 3.893 4 C -0.080 4.080 5 C -0.119 4.119 6 C -0.105 4.105 7 C -0.144 4.144 8 C 0.134 3.866 9 N -0.672 5.672 10 C 0.522 3.478 11 O -0.561 6.561 12 C 0.028 3.972 13 H 0.047 0.953 14 C -0.121 4.121 15 C -0.531 4.531 16 H 0.050 0.950 17 C 0.021 3.979 18 N -0.910 5.910 19 Si 0.956 3.044 20 H -0.274 1.274 21 H -0.274 1.274 22 H -0.278 1.278 23 C -0.133 4.133 24 H 0.093 0.907 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.105 0.895 32 H 0.421 0.579 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.023 0.977 36 H 0.266 0.734 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.006 -3.002 9.690 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.331 6.331 3 C 0.031 3.969 4 C -0.081 4.081 5 C -0.138 4.138 6 C -0.123 4.123 7 C -0.165 4.165 8 C 0.039 3.961 9 N -0.318 5.318 10 C 0.313 3.687 11 O -0.438 6.438 12 C 0.007 3.993 13 H 0.065 0.935 14 C -0.179 4.179 15 C -0.570 4.570 16 H 0.068 0.932 17 C -0.178 4.178 18 N -0.549 5.549 19 Si 0.782 3.218 20 H -0.200 1.200 21 H -0.199 1.199 22 H -0.204 1.204 23 C -0.153 4.153 24 H 0.112 0.888 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.168 0.832 30 H 0.162 0.838 31 H 0.123 0.877 32 H 0.259 0.741 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.435 -2.771 10.105 21.205 hybrid contribution 0.936 0.455 -0.563 1.184 sum -17.499 -2.315 9.542 20.065 Atomic orbital electron populations 1.22947 0.79291 1.03791 1.01123 1.87941 1.21511 1.28037 1.95648 1.21370 0.87955 0.85059 1.02494 1.19651 0.95291 1.00505 0.92629 1.21274 0.93649 1.00383 0.98461 1.21236 0.94775 0.98866 0.97434 1.21251 1.00209 1.02385 0.92623 1.18079 0.91875 0.99972 0.86136 1.43727 1.17288 1.58142 1.12616 1.21835 0.80474 0.75656 0.90750 1.90525 1.70472 1.41155 1.41626 1.18824 0.94280 0.96592 0.89646 0.93523 1.21583 1.00169 0.94059 1.02103 1.21267 1.00802 1.34139 1.00760 0.93165 1.25587 1.01567 0.95947 0.94726 1.69941 1.36863 1.43393 1.04732 0.85580 0.79855 0.78835 0.77535 1.19968 1.19913 1.20358 1.20958 0.91346 1.03358 0.99639 0.88806 0.92668 0.93073 0.90298 0.91232 0.83155 0.83805 0.87658 0.74139 0.92975 0.90713 0.95819 0.92487 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.54 16 2 O -0.41 -8.29 10.69 -148.98 -1.59 -9.88 16 3 C 0.11 1.91 6.06 71.24 0.43 2.34 16 4 C -0.08 -1.92 5.51 -19.88 -0.11 -2.03 16 5 C -0.12 -2.79 9.70 22.29 0.22 -2.58 16 6 C -0.10 -2.90 10.04 22.25 0.22 -2.68 16 7 C -0.14 -5.14 8.66 22.39 0.19 -4.94 16 8 C 0.13 4.58 6.28 38.15 0.24 4.82 16 9 N -0.67 -24.40 5.19 -303.50 -1.58 -25.98 16 10 C 0.52 24.29 6.89 87.65 0.60 24.89 16 11 O -0.56 -29.87 13.16 -3.04 -0.04 -29.91 16 12 C 0.03 1.39 2.64 -12.29 -0.03 1.36 16 13 H 0.05 2.40 8.14 -2.38 -0.02 2.38 16 14 C -0.12 -5.52 8.87 71.98 0.64 -4.89 16 15 C -0.53 -30.70 8.37 25.60 0.21 -30.48 16 16 H 0.05 3.10 6.75 -2.91 -0.02 3.08 16 17 C 0.02 1.18 5.30 84.65 0.45 1.63 16 18 N -0.91 -50.82 11.32 21.45 0.24 -50.58 16 19 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 23 C -0.13 -3.65 9.62 22.39 0.22 -3.43 16 24 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 28 H 0.07 1.07 8.09 -2.38 -0.02 1.05 16 29 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 30 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 31 H 0.11 4.39 6.43 -2.91 -0.02 4.37 16 32 H 0.42 12.52 8.41 -92.71 -0.78 11.74 16 33 H 0.05 1.92 7.69 -2.39 -0.02 1.90 16 34 H 0.07 3.75 6.07 -2.38 -0.01 3.73 16 35 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 36 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 37 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -69.13 314.85 3.89 -65.24 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.29 Total: 18.68 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 4.53 Total: -14.44 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -1.33 Total: -76.55 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -1.63 Total: -39.80 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -69.13 3.89 -65.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596752326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.244 kcal (2) G-P(sol) polarization free energy of solvation -69.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds