Wall clock time and date at job start Mon Mar 30 2020 06:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00611 * 2 1 4 4 C 1.50703 * 109.47712 * 179.97438 * 3 2 1 5 5 C 1.38138 * 120.02933 * 359.97438 * 4 3 2 6 6 C 1.38258 * 120.06499 * 179.97438 * 5 4 3 7 7 C 1.38300 * 120.14345 * 359.95611 * 6 5 4 8 8 C 1.38092 * 120.07160 * 359.97438 * 7 6 5 9 9 C 1.38849 * 120.03676 * 180.18282 * 4 3 2 10 10 N 1.39923 * 120.07308 * 0.04807 * 9 4 3 11 11 C 1.34775 * 120.00116 * 205.04997 * 10 9 4 12 12 O 1.21288 * 119.99818 * 5.53396 * 11 10 9 13 13 C 1.50701 * 120.00067 * 185.52683 * 11 10 9 14 14 H 1.08998 * 109.47058 * 60.00682 * 13 11 10 15 15 C 1.53001 * 109.47178 * 300.00248 * 13 11 10 16 16 C 1.50696 * 109.46937 * 180.02562 * 13 11 10 17 17 H 1.08004 * 120.00423 * 25.05842 * 16 13 11 18 18 C 1.37877 * 120.00237 * 205.05529 * 16 13 11 19 19 N 1.31513 * 120.00345 * 185.01006 * 18 16 13 20 20 Si 1.86807 * 119.99676 * 5.00347 * 18 16 13 21 21 H 1.48498 * 109.47003 * 94.97528 * 20 18 16 22 22 H 1.48498 * 109.46938 * 214.97544 * 20 18 16 23 23 H 1.48503 * 109.46925 * 334.97723 * 20 18 16 24 24 H 1.08995 * 109.47742 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46981 * 300.00316 * 1 2 3 26 26 H 1.08999 * 109.47071 * 59.99893 * 1 2 3 27 27 H 1.09000 * 109.47261 * 59.99699 * 3 2 1 28 28 H 1.09004 * 109.46838 * 299.99835 * 3 2 1 29 29 H 1.07995 * 119.96888 * 359.97438 * 5 4 3 30 30 H 1.08001 * 119.92881 * 179.97438 * 6 5 4 31 31 H 1.08006 * 119.96329 * 180.02562 * 7 6 5 32 32 H 1.07999 * 120.03329 * 179.97438 * 8 7 6 33 33 H 0.96996 * 119.99957 * 25.05359 * 10 9 4 34 34 H 1.08999 * 109.46828 * 185.00357 * 15 13 11 35 35 H 1.09001 * 109.47198 * 305.00187 * 15 13 11 36 36 H 1.09000 * 109.46907 * 65.00018 * 15 13 11 37 37 H 0.97005 * 120.00069 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.1073 -0.0604 0.0016 6 6 5.4855 -0.1705 0.0017 7 6 6.2730 0.9664 -0.0002 8 6 5.6846 2.2157 -0.0026 9 6 4.3004 2.3298 0.0046 10 7 3.7011 3.5941 0.0090 11 6 4.3679 4.6577 -0.4815 12 8 5.4449 4.5036 -1.0176 13 6 3.7752 6.0383 -0.3641 14 1 3.6280 6.2822 0.6880 15 6 2.4291 6.0789 -1.0903 16 6 4.7117 7.0415 -0.9866 17 1 5.4061 6.7293 -1.7526 18 6 4.6821 8.3581 -0.5782 19 7 5.4283 9.2528 -1.1884 20 14 3.5819 8.8711 0.8417 21 1 4.3666 8.8670 2.1024 22 1 3.0547 10.2365 0.5911 23 1 2.4498 7.9173 0.9602 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6887 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.4952 -0.9501 0.0024 30 1 5.9482 -1.1464 0.0029 31 1 7.3494 0.8771 -0.0006 32 1 6.3001 3.1031 -0.0037 33 1 2.8057 3.7052 0.3651 34 1 2.0425 7.0980 -1.0819 35 1 2.5620 5.7492 -2.1207 36 1 1.7240 5.4185 -0.5856 37 1 5.4077 10.1790 -0.9009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596809527.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:23 Heat of formation + Delta-G solvation = -55.863814 kcal Electronic energy + Delta-G solvation = -19647.452939 eV Core-core repulsion = 16582.949779 eV Total energy + Delta-G solvation = -3064.503159 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.31080 -38.50994 -37.47298 -34.36367 -33.84950 -31.73421 -31.41547 -29.22366 -27.29020 -25.53757 -25.30621 -23.61855 -21.85162 -21.05123 -19.38117 -17.64432 -17.10579 -16.55230 -16.08835 -15.93412 -15.81451 -14.70674 -14.63473 -14.35305 -13.97355 -13.60974 -13.33659 -13.24586 -12.69350 -12.60820 -12.30443 -12.09639 -11.87560 -11.50614 -11.20914 -11.12359 -10.98810 -10.73046 -10.50781 -10.11266 -9.97060 -9.84774 -9.23472 -8.82239 -8.63428 -8.50261 -7.71514 -6.13097 -4.13757 1.46696 1.65360 3.17971 3.25462 3.29140 3.36795 3.47411 3.59639 4.05158 4.32069 4.79057 5.05019 5.09970 5.12362 5.15301 5.20791 5.31357 5.34193 5.41991 5.54469 5.67633 5.85328 5.88538 6.02464 6.23749 6.30847 6.38673 6.50596 6.56295 6.73494 6.74876 6.85170 7.01166 7.07849 7.32913 7.44788 7.88708 8.44123 8.85497 9.04045 9.45442 10.99709 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023031 B = 0.005379 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.437472 B = 5204.232115 C = 6111.780799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.108 3.892 4 C -0.137 4.137 5 C -0.078 4.078 6 C -0.154 4.154 7 C -0.098 4.098 8 C -0.136 4.136 9 C 0.172 3.828 10 N -0.688 5.688 11 C 0.521 3.479 12 O -0.503 6.503 13 C -0.002 4.002 14 H 0.058 0.942 15 C -0.137 4.137 16 C -0.503 4.503 17 H 0.090 0.910 18 C 0.074 3.926 19 N -0.892 5.892 20 Si 0.868 3.132 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.260 1.260 24 H 0.086 0.914 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.130 0.870 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.150 0.850 33 H 0.403 0.597 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.025 0.975 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.132 -16.917 5.025 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.032 3.968 4 C -0.141 4.141 5 C -0.096 4.096 6 C -0.173 4.173 7 C -0.116 4.116 8 C -0.156 4.156 9 C 0.076 3.924 10 N -0.333 5.333 11 C 0.311 3.689 12 O -0.375 6.375 13 C -0.024 4.024 14 H 0.075 0.925 15 C -0.195 4.195 16 C -0.541 4.541 17 H 0.108 0.892 18 C -0.128 4.128 19 N -0.529 5.529 20 Si 0.694 3.306 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.185 1.185 24 H 0.104 0.896 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.147 0.853 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.168 0.832 33 H 0.239 0.761 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.180 -16.850 4.612 19.290 hybrid contribution -1.236 0.719 0.943 1.713 sum -9.416 -16.132 5.555 19.487 Atomic orbital electron populations 1.22754 0.80868 1.02786 1.00180 1.87835 1.19664 1.27424 1.95474 1.21095 0.90422 0.84909 1.00415 1.19297 0.93388 0.92929 1.08442 1.20687 0.94370 0.96510 0.98058 1.21043 0.93725 0.98331 1.04231 1.21083 0.99786 0.92061 0.98691 1.21492 0.93240 0.99302 1.01548 1.17677 0.92350 0.84159 0.98263 1.44162 1.20014 1.06353 1.62751 1.21897 0.85082 0.86429 0.75467 1.90558 1.21395 1.85349 1.40187 1.19374 0.95335 0.89207 0.98488 0.92450 1.22044 0.96040 1.01102 1.00341 1.20769 1.19475 0.91116 1.22772 0.89227 1.24980 0.95236 0.96326 0.96281 1.69887 1.39891 1.02483 1.40622 0.87021 0.81631 0.78454 0.83477 1.20251 1.21029 1.18480 0.89556 0.93976 0.93891 0.92450 0.91975 0.85258 0.86408 0.86025 0.83209 0.76136 0.92155 0.92953 0.95621 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.44 9.18 -35.23 -0.32 -4.77 16 3 C 0.11 1.28 5.29 36.01 0.19 1.47 16 4 C -0.14 -1.98 5.90 -104.43 -0.62 -2.59 16 5 C -0.08 -1.05 9.37 -39.61 -0.37 -1.42 16 6 C -0.15 -2.01 10.04 -39.55 -0.40 -2.41 16 7 C -0.10 -1.41 10.04 -39.61 -0.40 -1.81 16 8 C -0.14 -2.36 8.72 -39.39 -0.34 -2.70 16 9 C 0.17 2.86 6.41 -83.70 -0.54 2.32 16 10 N -0.69 -11.58 5.10 -9.86 -0.05 -11.63 16 11 C 0.52 11.12 6.95 -10.99 -0.08 11.04 16 12 O -0.50 -12.48 12.78 5.55 0.07 -12.41 16 13 C 0.00 -0.05 2.18 -92.92 -0.20 -0.25 16 14 H 0.06 1.24 5.72 -51.93 -0.30 0.94 16 15 C -0.14 -2.63 8.61 37.16 0.32 -2.31 16 16 C -0.50 -14.02 8.52 -34.44 -0.29 -14.31 16 17 H 0.09 2.86 7.34 -52.48 -0.39 2.47 16 18 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.89 -26.89 13.96 55.43 0.77 -26.11 16 20 Si 0.87 20.14 26.34 -169.99 -4.48 15.66 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.26 -5.46 5.96 56.52 0.34 -5.13 16 24 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.04 0.30 8.14 -51.92 -0.42 -0.13 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.59 7.85 -51.93 -0.41 0.19 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.13 1.58 7.00 -52.49 -0.37 1.21 16 30 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 31 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 32 H 0.15 2.97 5.79 -52.49 -0.30 2.66 16 33 H 0.40 5.49 7.04 -40.82 -0.29 5.21 16 34 H 0.06 1.19 6.89 -51.93 -0.36 0.83 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.38 7.59 -51.93 -0.39 -0.01 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 306.43 15.07 4.62 4.62 Total: -1.00 -32.32 306.43 -6.06 -38.38 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.96 Total: 5.89 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -1.71 Total: -9.63 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.72 Total: -37.74 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.25 Total: -17.18 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.48 Total: 15.66 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.32 -6.06 -38.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596809527.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.482 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds