Wall clock time and date at job start Mon Mar 30 2020 06:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00611 * 2 1 4 4 C 1.50703 * 109.47712 * 179.97438 * 3 2 1 5 5 C 1.38138 * 120.02933 * 359.97438 * 4 3 2 6 6 C 1.38258 * 120.06499 * 179.97438 * 5 4 3 7 7 C 1.38300 * 120.14345 * 359.95611 * 6 5 4 8 8 C 1.38092 * 120.07160 * 359.97438 * 7 6 5 9 9 C 1.38849 * 120.03676 * 180.18282 * 4 3 2 10 10 N 1.39923 * 120.07308 * 0.04807 * 9 4 3 11 11 C 1.34775 * 120.00116 * 205.04997 * 10 9 4 12 12 O 1.21288 * 119.99818 * 5.53396 * 11 10 9 13 13 C 1.50701 * 120.00067 * 185.52683 * 11 10 9 14 14 H 1.08998 * 109.47058 * 60.00682 * 13 11 10 15 15 C 1.53001 * 109.47178 * 300.00248 * 13 11 10 16 16 C 1.50696 * 109.46937 * 180.02562 * 13 11 10 17 17 H 1.08004 * 120.00423 * 25.05842 * 16 13 11 18 18 C 1.37877 * 120.00237 * 205.05529 * 16 13 11 19 19 N 1.31513 * 120.00345 * 185.01006 * 18 16 13 20 20 Si 1.86807 * 119.99676 * 5.00347 * 18 16 13 21 21 H 1.48498 * 109.47003 * 94.97528 * 20 18 16 22 22 H 1.48498 * 109.46938 * 214.97544 * 20 18 16 23 23 H 1.48503 * 109.46925 * 334.97723 * 20 18 16 24 24 H 1.08995 * 109.47742 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46981 * 300.00316 * 1 2 3 26 26 H 1.08999 * 109.47071 * 59.99893 * 1 2 3 27 27 H 1.09000 * 109.47261 * 59.99699 * 3 2 1 28 28 H 1.09004 * 109.46838 * 299.99835 * 3 2 1 29 29 H 1.07995 * 119.96888 * 359.97438 * 5 4 3 30 30 H 1.08001 * 119.92881 * 179.97438 * 6 5 4 31 31 H 1.08006 * 119.96329 * 180.02562 * 7 6 5 32 32 H 1.07999 * 120.03329 * 179.97438 * 8 7 6 33 33 H 0.96996 * 119.99957 * 25.05359 * 10 9 4 34 34 H 1.08999 * 109.46828 * 185.00357 * 15 13 11 35 35 H 1.09001 * 109.47198 * 305.00187 * 15 13 11 36 36 H 1.09000 * 109.46907 * 65.00018 * 15 13 11 37 37 H 0.97005 * 120.00069 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.1073 -0.0604 0.0016 6 6 5.4855 -0.1705 0.0017 7 6 6.2730 0.9664 -0.0002 8 6 5.6846 2.2157 -0.0026 9 6 4.3004 2.3298 0.0046 10 7 3.7011 3.5941 0.0090 11 6 4.3679 4.6577 -0.4815 12 8 5.4449 4.5036 -1.0176 13 6 3.7752 6.0383 -0.3641 14 1 3.6280 6.2822 0.6880 15 6 2.4291 6.0789 -1.0903 16 6 4.7117 7.0415 -0.9866 17 1 5.4061 6.7293 -1.7526 18 6 4.6821 8.3581 -0.5782 19 7 5.4283 9.2528 -1.1884 20 14 3.5819 8.8711 0.8417 21 1 4.3666 8.8670 2.1024 22 1 3.0547 10.2365 0.5911 23 1 2.4498 7.9173 0.9602 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6887 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.4952 -0.9501 0.0024 30 1 5.9482 -1.1464 0.0029 31 1 7.3494 0.8771 -0.0006 32 1 6.3001 3.1031 -0.0037 33 1 2.8057 3.7052 0.3651 34 1 2.0425 7.0980 -1.0819 35 1 2.5620 5.7492 -2.1207 36 1 1.7240 5.4185 -0.5856 37 1 5.4077 10.1790 -0.9009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596809527.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:23 Heat of formation + Delta-G solvation = -78.540969 kcal Electronic energy + Delta-G solvation = -19648.436294 eV Core-core repulsion = 16582.949779 eV Total energy + Delta-G solvation = -3065.486515 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.69204 -39.78744 -38.41114 -35.82650 -35.73161 -33.39258 -32.77472 -30.49550 -28.09600 -27.21500 -26.38083 -25.17777 -23.22690 -22.22295 -20.96782 -19.15173 -18.86024 -17.63959 -17.34886 -17.01836 -16.84508 -16.31615 -16.12557 -15.51067 -15.36022 -14.92833 -14.82416 -14.50547 -14.24242 -13.91352 -13.65068 -13.20318 -13.14664 -12.96151 -12.62678 -12.55103 -12.28132 -12.11357 -12.01475 -11.67274 -11.46975 -11.24085 -10.77367 -10.75430 -10.43894 -9.66498 -8.97317 -8.27831 -6.35729 0.30391 0.46561 1.37059 1.39400 1.50526 1.77468 2.13260 2.35778 2.73686 2.87943 3.07804 3.79840 3.97265 4.11983 4.19980 4.30343 4.37462 4.41311 4.50544 4.58508 4.63555 4.66430 4.67522 4.73716 4.80638 4.92093 5.08542 5.13693 5.37618 5.41488 5.48647 5.55835 5.57959 5.66205 6.11934 6.21296 6.22380 6.54570 6.78156 7.22907 7.33573 8.89856 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023031 B = 0.005379 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.437472 B = 5204.232115 C = 6111.780799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.108 3.892 4 C -0.131 4.131 5 C -0.081 4.081 6 C -0.141 4.141 7 C -0.105 4.105 8 C -0.163 4.163 9 C 0.145 3.855 10 N -0.666 5.666 11 C 0.521 3.479 12 O -0.553 6.553 13 C -0.005 4.005 14 H 0.077 0.923 15 C -0.132 4.132 16 C -0.514 4.514 17 H 0.025 0.975 18 C 0.009 3.991 19 N -0.951 5.951 20 Si 0.943 3.057 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.213 1.213 24 H 0.101 0.899 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.149 0.851 30 H 0.152 0.848 31 H 0.138 0.862 32 H 0.114 0.886 33 H 0.421 0.579 34 H 0.057 0.943 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.508 -19.292 7.074 24.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.031 3.969 4 C -0.134 4.134 5 C -0.099 4.099 6 C -0.160 4.160 7 C -0.123 4.123 8 C -0.184 4.184 9 C 0.050 3.950 10 N -0.312 5.312 11 C 0.312 3.688 12 O -0.429 6.429 13 C -0.027 4.027 14 H 0.095 0.905 15 C -0.190 4.190 16 C -0.553 4.553 17 H 0.043 0.957 18 C -0.188 4.188 19 N -0.590 5.590 20 Si 0.764 3.236 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.135 1.135 24 H 0.119 0.881 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.166 0.834 30 H 0.170 0.830 31 H 0.155 0.845 32 H 0.132 0.868 33 H 0.260 0.740 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.612 -19.291 6.678 23.486 hybrid contribution -0.108 1.283 0.232 1.308 sum -11.720 -18.009 6.910 22.571 Atomic orbital electron populations 1.22971 0.79017 1.04144 1.01058 1.87795 1.21627 1.27018 1.95650 1.21109 0.88628 0.85620 1.01515 1.19562 0.94975 0.92217 1.06648 1.21022 0.94823 0.96831 0.97230 1.21426 0.93657 0.99119 1.01762 1.21293 1.00978 0.91512 0.98543 1.21396 0.93887 0.99356 1.03750 1.17768 0.92321 0.84446 1.00453 1.43673 1.20279 1.05587 1.61667 1.21663 0.84535 0.87268 0.75378 1.90561 1.23560 1.86076 1.42692 1.19349 0.95705 0.88338 0.99281 0.90526 1.21936 0.94828 1.02348 0.99927 1.20901 1.19578 0.93011 1.21765 0.95666 1.26033 0.97184 0.95944 0.99628 1.70082 1.42690 1.03079 1.43194 0.85832 0.80526 0.78825 0.78393 1.20002 1.20959 1.13534 0.88086 0.92751 0.93325 0.90421 0.91615 0.83376 0.83033 0.84450 0.86772 0.74015 0.92356 0.94085 0.90212 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.40 -7.78 9.18 -148.98 -1.37 -9.15 16 3 C 0.11 2.18 5.29 71.24 0.38 2.56 16 4 C -0.13 -3.46 5.90 -19.74 -0.12 -3.57 16 5 C -0.08 -1.94 9.37 22.25 0.21 -1.73 16 6 C -0.14 -3.29 10.04 22.29 0.22 -3.06 16 7 C -0.10 -2.96 10.04 22.25 0.22 -2.74 16 8 C -0.16 -5.84 8.72 22.39 0.20 -5.65 16 9 C 0.15 4.72 6.41 38.15 0.24 4.97 16 10 N -0.67 -21.61 5.10 -303.51 -1.55 -23.16 16 11 C 0.52 22.61 6.95 87.66 0.61 23.22 16 12 O -0.55 -29.30 12.78 -3.05 -0.04 -29.34 16 13 C -0.01 -0.22 2.18 -12.29 -0.03 -0.25 16 14 H 0.08 3.08 5.72 -2.39 -0.01 3.07 16 15 C -0.13 -4.73 8.61 71.98 0.62 -4.11 16 16 C -0.51 -29.97 8.52 25.60 0.22 -29.75 16 17 H 0.02 1.74 7.34 -2.91 -0.02 1.72 16 18 C 0.01 0.51 5.47 84.65 0.46 0.97 16 19 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 20 Si 0.94 40.96 26.34 68.60 1.81 42.77 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 23 H -0.21 -7.62 5.96 99.48 0.59 -7.02 16 24 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.08 1.26 7.85 -2.39 -0.02 1.25 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.15 3.04 7.00 -2.91 -0.02 3.01 16 30 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 31 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.11 4.90 5.79 -2.91 -0.02 4.88 16 33 H 0.42 10.11 7.04 -92.71 -0.65 9.46 16 34 H 0.06 2.11 6.89 -2.39 -0.02 2.09 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.99 7.59 -2.39 -0.02 1.97 16 37 H 0.27 15.67 8.31 -92.70 -0.77 14.90 16 Total: -1.00 -77.13 306.43 3.95 -73.18 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.31 Total: 23.20 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 4.49 Total: -17.60 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -1.25 Total: -83.06 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -1.41 Total: -38.49 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.81 Total: 42.77 kcal Total: -77.13 3.95 -73.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596809527.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.362 kcal (2) G-P(sol) polarization free energy of solvation -77.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds