Wall clock time and date at job start Mon Mar 30 2020 07:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47488 * 2 1 4 4 C 1.35898 * 117.00049 * 179.97438 * 3 2 1 5 5 C 1.38803 * 120.02165 * 0.02562 * 4 3 2 6 6 C 1.38170 * 120.08477 * 179.97438 * 5 4 3 7 7 C 1.38163 * 120.12394 * 359.68461 * 6 5 4 8 8 C 1.38885 * 120.03923 * 0.59365 * 7 6 5 9 9 N 1.39923 * 120.04081 * 179.70140 * 8 7 6 10 10 C 1.34780 * 119.99795 * 214.80301 * 9 8 7 11 11 O 1.21287 * 119.99892 * 355.66827 * 10 9 8 12 12 C 1.50699 * 120.00108 * 175.66388 * 10 9 8 13 13 H 1.08999 * 109.47062 * 300.00539 * 12 10 9 14 14 C 1.53004 * 109.46887 * 60.00165 * 12 10 9 15 15 C 1.50694 * 109.47312 * 180.02562 * 12 10 9 16 16 H 1.07999 * 120.00060 * 0.02562 * 15 12 10 17 17 C 1.37874 * 120.00174 * 180.02562 * 15 12 10 18 18 N 1.31513 * 120.00107 * 179.97438 * 17 15 12 19 19 Si 1.86799 * 119.99896 * 0.02562 * 17 15 12 20 20 H 1.48497 * 109.47420 * 90.00171 * 19 17 15 21 21 H 1.48505 * 109.47246 * 209.99914 * 19 17 15 22 22 H 1.48496 * 109.47185 * 329.99557 * 19 17 15 23 23 C 1.38582 * 120.01859 * 179.97438 * 4 3 2 24 24 H 1.08994 * 109.47129 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46937 * 299.99905 * 1 2 3 26 26 H 1.09000 * 109.46527 * 59.99710 * 1 2 3 27 27 H 1.09002 * 109.47183 * 239.99368 * 2 1 3 28 28 H 1.09007 * 109.47157 * 120.00242 * 2 1 3 29 29 H 1.08000 * 119.95898 * 359.97438 * 5 4 3 30 30 H 1.08003 * 119.93874 * 179.97438 * 6 5 4 31 31 H 1.08000 * 119.98202 * 180.31753 * 7 6 5 32 32 H 0.96996 * 120.00499 * 35.08763 * 9 8 7 33 33 H 1.08998 * 109.47121 * 299.99923 * 14 12 10 34 34 H 1.08999 * 109.46964 * 60.00314 * 14 12 10 35 35 H 1.08997 * 109.46632 * 179.97438 * 14 12 10 36 36 H 0.97001 * 120.00331 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.06228 * 0.04391 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 0.0005 5 6 4.1996 0.4247 0.0005 6 6 5.5696 0.6042 0.0005 7 6 6.1019 1.8791 -0.0060 8 6 5.2604 2.9840 -0.0002 9 7 5.7995 4.2752 -0.0005 10 6 5.1778 5.2651 0.6704 11 8 4.1111 5.0562 1.2085 12 6 5.8080 6.6316 0.7519 13 1 6.7807 6.5546 1.2377 14 6 5.9859 7.1961 -0.6590 15 6 4.9187 7.5481 1.5518 16 1 3.9901 7.1781 1.9606 17 6 5.2903 8.8591 1.7617 18 7 4.5139 9.6591 2.4593 19 14 6.8961 9.4994 1.0539 20 1 6.6549 10.0458 -0.3056 21 1 7.4308 10.5721 1.9307 22 1 7.8793 8.3894 0.9741 23 6 3.8839 2.8056 0.0000 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.7864 -0.5731 0.0005 30 1 6.2256 -0.2538 0.0009 31 1 7.1731 2.0167 -0.0112 32 1 6.6183 4.4588 -0.4868 33 1 6.6294 6.5331 -1.2372 34 1 5.0132 7.2731 -1.1448 35 1 6.4413 8.1846 -0.6000 36 1 4.7752 10.5816 2.6067 37 1 3.2272 3.6631 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596858355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:04 Heat of formation + Delta-G solvation = -45.936950 kcal Electronic energy + Delta-G solvation = -19373.610601 eV Core-core repulsion = 16309.537903 eV Total energy + Delta-G solvation = -3064.072698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.36231 -39.22126 -37.22988 -34.07494 -33.92765 -32.04387 -31.36220 -29.68807 -28.90256 -25.19213 -24.26832 -23.18567 -22.53430 -21.12915 -19.44263 -18.43650 -16.83626 -16.36518 -16.12909 -16.03546 -15.59497 -15.42643 -14.62708 -14.35392 -13.54393 -13.40116 -13.37285 -13.19380 -12.82970 -12.67717 -12.36302 -12.10564 -12.04680 -11.68789 -11.57999 -11.07767 -10.96970 -10.85106 -10.65833 -10.33790 -9.87223 -9.67950 -9.15167 -8.80949 -8.60800 -8.19179 -7.84748 -6.07796 -4.09050 1.44679 1.58073 3.12417 3.21186 3.28107 3.34648 3.37644 3.65551 3.98982 4.34991 4.77901 4.78208 4.99548 5.02756 5.15504 5.20933 5.26409 5.37071 5.52390 5.59633 5.63831 5.70386 5.88744 6.04306 6.07849 6.23418 6.36195 6.41170 6.42636 6.56275 6.60123 6.69647 7.09374 7.15178 7.47791 7.55655 7.92664 8.49436 8.89050 9.11283 9.49999 11.05004 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029842 B = 0.004484 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.052510 B = 6242.278309 C = 6946.249857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.313 6.313 4 C 0.147 3.853 5 C -0.236 4.236 6 C -0.064 4.064 7 C -0.192 4.192 8 C 0.199 3.801 9 N -0.688 5.688 10 C 0.525 3.475 11 O -0.504 6.504 12 C -0.002 4.002 13 H 0.056 0.944 14 C -0.147 4.147 15 C -0.509 4.509 16 H 0.094 0.906 17 C 0.072 3.928 18 N -0.894 5.894 19 Si 0.884 3.116 20 H -0.277 1.277 21 H -0.295 1.295 22 H -0.267 1.267 23 C -0.159 4.159 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.408 0.592 33 H 0.034 0.966 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.265 0.735 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 -19.243 -8.189 20.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.227 6.227 4 C 0.101 3.899 5 C -0.256 4.256 6 C -0.083 4.083 7 C -0.212 4.212 8 C 0.103 3.897 9 N -0.335 5.335 10 C 0.315 3.685 11 O -0.375 6.375 12 C -0.023 4.023 13 H 0.074 0.926 14 C -0.205 4.205 15 C -0.547 4.547 16 H 0.112 0.888 17 C -0.130 4.130 18 N -0.531 5.531 19 Si 0.714 3.286 20 H -0.204 1.204 21 H -0.222 1.222 22 H -0.192 1.192 23 C -0.180 4.180 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.244 0.756 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.706 -18.953 -7.667 20.457 hybrid contribution 1.422 0.321 -0.568 1.564 sum 2.127 -18.632 -8.235 20.481 Atomic orbital electron populations 1.21777 0.92897 1.02569 1.03752 1.22743 0.95794 0.82306 1.01144 1.86109 1.19197 1.28836 1.88554 1.18761 0.82135 0.93612 0.95413 1.21094 0.94370 0.97634 1.12501 1.20607 0.94157 0.96391 0.97151 1.20805 0.99341 0.91604 1.09488 1.17535 0.91462 0.84991 0.95687 1.44050 1.29185 1.07151 1.53070 1.21606 0.84983 0.86300 0.75605 1.90608 1.21099 1.81996 1.43828 1.19334 0.98532 0.89042 0.95418 0.92616 1.22151 1.01106 1.00043 0.97177 1.20913 1.07646 0.93990 1.32181 0.88757 1.24969 0.96576 0.96604 0.94868 1.69876 1.37266 1.06264 1.39715 0.86916 0.84593 0.78698 0.78359 1.20441 1.22233 1.19222 1.20562 0.94404 0.96020 1.06985 0.90575 0.91370 0.91502 0.92240 0.92168 0.85933 0.85820 0.85776 0.75591 0.94746 0.92137 0.92999 0.92477 0.83293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.91 16 2 C 0.06 0.57 5.46 37.16 0.20 0.77 16 3 O -0.31 -4.74 10.13 -19.42 -0.20 -4.94 16 4 C 0.15 2.31 6.68 -39.25 -0.26 2.05 16 5 C -0.24 -3.02 9.04 -39.40 -0.36 -3.38 16 6 C -0.06 -0.77 10.03 -39.63 -0.40 -1.16 16 7 C -0.19 -2.55 9.96 -39.37 -0.39 -2.94 16 8 C 0.20 3.30 6.30 -83.72 -0.53 2.78 16 9 N -0.69 -11.64 5.26 -9.88 -0.05 -11.69 16 10 C 0.53 11.48 6.99 -10.98 -0.08 11.40 16 11 O -0.50 -12.93 12.90 5.55 0.07 -12.85 16 12 C 0.00 -0.04 2.24 -92.92 -0.21 -0.25 16 13 H 0.06 1.23 7.20 -51.93 -0.37 0.86 16 14 C -0.15 -2.95 8.57 37.16 0.32 -2.63 16 15 C -0.51 -14.59 8.96 -34.44 -0.31 -14.90 16 16 H 0.09 3.09 7.00 -52.49 -0.37 2.72 16 17 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 18 N -0.89 -27.49 13.96 55.43 0.77 -26.72 16 19 Si 0.88 21.02 24.37 -169.99 -4.14 16.88 16 20 H -0.28 -6.38 6.87 56.52 0.39 -5.99 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.27 -5.86 6.53 56.52 0.37 -5.49 16 23 C -0.16 -2.89 8.63 -39.25 -0.34 -3.23 16 24 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 28 H 0.06 0.56 7.66 -51.92 -0.40 0.16 16 29 H 0.12 1.23 6.29 -52.49 -0.33 0.90 16 30 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.41 5.44 8.11 -40.82 -0.33 5.11 16 33 H 0.03 0.53 7.47 -51.93 -0.39 0.14 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 36 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.15 3.14 6.23 -52.49 -0.33 2.81 16 LS Contribution 303.59 15.07 4.58 4.58 Total: -1.00 -33.77 303.59 -5.83 -39.60 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -4.80 Total: 5.58 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -2.06 Total: -10.44 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.72 Total: -38.41 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.13 Total: -17.79 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.14 Total: 16.88 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.77 -5.83 -39.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596858355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.334 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds