Wall clock time and date at job start Mon Mar 30 2020 07:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47488 * 2 1 4 4 C 1.35898 * 117.00049 * 179.97438 * 3 2 1 5 5 C 1.38803 * 120.02165 * 0.02562 * 4 3 2 6 6 C 1.38170 * 120.08477 * 179.97438 * 5 4 3 7 7 C 1.38163 * 120.12394 * 359.68461 * 6 5 4 8 8 C 1.38885 * 120.03923 * 0.59365 * 7 6 5 9 9 N 1.39923 * 120.04081 * 179.70140 * 8 7 6 10 10 C 1.34780 * 119.99795 * 214.80301 * 9 8 7 11 11 O 1.21287 * 119.99892 * 355.66827 * 10 9 8 12 12 C 1.50699 * 120.00108 * 175.66388 * 10 9 8 13 13 H 1.08999 * 109.47062 * 300.00539 * 12 10 9 14 14 C 1.53004 * 109.46887 * 60.00165 * 12 10 9 15 15 C 1.50694 * 109.47312 * 180.02562 * 12 10 9 16 16 H 1.07999 * 120.00060 * 0.02562 * 15 12 10 17 17 C 1.37874 * 120.00174 * 180.02562 * 15 12 10 18 18 N 1.31513 * 120.00107 * 179.97438 * 17 15 12 19 19 Si 1.86799 * 119.99896 * 0.02562 * 17 15 12 20 20 H 1.48497 * 109.47420 * 90.00171 * 19 17 15 21 21 H 1.48505 * 109.47246 * 209.99914 * 19 17 15 22 22 H 1.48496 * 109.47185 * 329.99557 * 19 17 15 23 23 C 1.38582 * 120.01859 * 179.97438 * 4 3 2 24 24 H 1.08994 * 109.47129 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46937 * 299.99905 * 1 2 3 26 26 H 1.09000 * 109.46527 * 59.99710 * 1 2 3 27 27 H 1.09002 * 109.47183 * 239.99368 * 2 1 3 28 28 H 1.09007 * 109.47157 * 120.00242 * 2 1 3 29 29 H 1.08000 * 119.95898 * 359.97438 * 5 4 3 30 30 H 1.08003 * 119.93874 * 179.97438 * 6 5 4 31 31 H 1.08000 * 119.98202 * 180.31753 * 7 6 5 32 32 H 0.96996 * 120.00499 * 35.08763 * 9 8 7 33 33 H 1.08998 * 109.47121 * 299.99923 * 14 12 10 34 34 H 1.08999 * 109.46964 * 60.00314 * 14 12 10 35 35 H 1.08997 * 109.46632 * 179.97438 * 14 12 10 36 36 H 0.97001 * 120.00331 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.06228 * 0.04391 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 0.0005 5 6 4.1996 0.4247 0.0005 6 6 5.5696 0.6042 0.0005 7 6 6.1019 1.8791 -0.0060 8 6 5.2604 2.9840 -0.0002 9 7 5.7995 4.2752 -0.0005 10 6 5.1778 5.2651 0.6704 11 8 4.1111 5.0562 1.2085 12 6 5.8080 6.6316 0.7519 13 1 6.7807 6.5546 1.2377 14 6 5.9859 7.1961 -0.6590 15 6 4.9187 7.5481 1.5518 16 1 3.9901 7.1781 1.9606 17 6 5.2903 8.8591 1.7617 18 7 4.5139 9.6591 2.4593 19 14 6.8961 9.4994 1.0539 20 1 6.6549 10.0458 -0.3056 21 1 7.4308 10.5721 1.9307 22 1 7.8793 8.3894 0.9741 23 6 3.8839 2.8056 0.0000 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.7864 -0.5731 0.0005 30 1 6.2256 -0.2538 0.0009 31 1 7.1731 2.0167 -0.0112 32 1 6.6183 4.4588 -0.4868 33 1 6.6294 6.5331 -1.2372 34 1 5.0132 7.2731 -1.1448 35 1 6.4413 8.1846 -0.6000 36 1 4.7752 10.5816 2.6067 37 1 3.2272 3.6631 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596858355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:03 Heat of formation + Delta-G solvation = -71.020980 kcal Electronic energy + Delta-G solvation = -19374.698327 eV Core-core repulsion = 16309.537903 eV Total energy + Delta-G solvation = -3065.160423 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.66574 -40.56241 -38.45960 -35.88296 -35.49911 -33.36601 -32.88846 -30.81808 -30.08359 -27.15133 -25.58891 -24.41720 -23.74014 -22.33457 -21.02664 -19.61945 -18.83158 -17.88792 -17.27651 -17.06056 -16.93254 -16.74110 -16.38714 -15.83885 -15.17490 -14.82980 -14.45848 -14.42778 -14.25446 -14.07690 -13.52063 -13.39010 -13.12063 -13.04810 -12.84594 -12.57779 -12.56023 -12.18963 -11.93732 -11.74598 -11.46909 -11.26221 -11.15047 -10.78803 -10.49364 -9.41633 -9.00600 -8.28282 -6.37561 0.28297 0.48438 1.33826 1.40806 1.52158 1.74067 2.03262 2.34105 2.40747 2.84247 3.05248 3.88093 3.98996 4.05318 4.10132 4.17862 4.30663 4.36579 4.38002 4.40376 4.54888 4.59616 4.68639 4.75449 4.91435 4.91688 4.99267 5.17999 5.33410 5.38136 5.39040 5.42032 5.50356 5.51844 5.93087 6.22823 6.51499 6.57649 6.78585 7.22094 7.35428 8.89586 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029842 B = 0.004484 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.052510 B = 6242.278309 C = 6946.249857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 O -0.346 6.346 4 C 0.131 3.869 5 C -0.225 4.225 6 C -0.053 4.053 7 C -0.180 4.180 8 C 0.173 3.827 9 N -0.665 5.665 10 C 0.524 3.476 11 O -0.559 6.559 12 C -0.003 4.003 13 H 0.078 0.922 14 C -0.142 4.142 15 C -0.527 4.527 16 H 0.027 0.973 17 C 0.006 3.994 18 N -0.953 5.953 19 Si 0.962 3.038 20 H -0.260 1.260 21 H -0.300 1.300 22 H -0.225 1.225 23 C -0.198 4.198 24 H 0.108 0.892 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.156 0.844 30 H 0.171 0.829 31 H 0.159 0.841 32 H 0.428 0.572 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.268 0.732 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.537 -22.317 -10.239 25.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.260 6.260 4 C 0.085 3.915 5 C -0.244 4.244 6 C -0.071 4.071 7 C -0.201 4.201 8 C 0.078 3.922 9 N -0.313 5.313 10 C 0.314 3.686 11 O -0.435 6.435 12 C -0.025 4.025 13 H 0.096 0.904 14 C -0.200 4.200 15 C -0.565 4.565 16 H 0.045 0.955 17 C -0.190 4.190 18 N -0.593 5.593 19 Si 0.786 3.214 20 H -0.185 1.185 21 H -0.228 1.228 22 H -0.148 1.148 23 C -0.219 4.219 24 H 0.127 0.873 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.174 0.826 30 H 0.189 0.811 31 H 0.176 0.824 32 H 0.268 0.732 33 H 0.109 0.891 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.599 -22.093 -9.765 24.589 hybrid contribution 0.055 1.098 0.113 1.105 sum 4.654 -20.995 -9.652 23.572 Atomic orbital electron populations 1.21835 0.91965 1.04325 1.02748 1.23120 0.96668 0.80444 1.02706 1.86086 1.19322 1.32010 1.88629 1.18911 0.82945 0.93654 0.95963 1.21504 0.94678 0.97945 1.10303 1.21191 0.94239 0.97262 0.94422 1.21175 1.00540 0.90802 1.07549 1.17769 0.91289 0.85451 0.97722 1.43576 1.29133 1.06633 1.51909 1.21442 0.84384 0.87049 0.75731 1.90611 1.23512 1.82878 1.46517 1.19274 0.97832 0.88690 0.96683 0.90417 1.22061 1.01660 1.00957 0.95294 1.21078 1.06557 0.95671 1.33168 0.95472 1.26074 1.01526 0.96446 0.94992 1.70083 1.40337 1.06883 1.41975 0.85674 0.79142 0.78806 0.77748 1.18540 1.22759 1.14832 1.20436 0.95178 0.95950 1.10334 0.87339 0.92760 0.92173 0.90104 0.90859 0.82609 0.81130 0.82371 0.73202 0.89146 0.93654 0.93151 0.92325 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 10.28 71.98 0.74 -1.72 16 2 C 0.04 0.86 5.46 71.98 0.39 1.26 16 3 O -0.35 -10.82 10.13 -92.40 -0.94 -11.76 16 4 C 0.13 4.16 6.68 22.49 0.15 4.31 16 5 C -0.23 -5.03 9.04 22.39 0.20 -4.83 16 6 C -0.05 -1.00 10.03 22.24 0.22 -0.78 16 7 C -0.18 -4.10 9.96 22.41 0.22 -3.88 16 8 C 0.17 5.60 6.30 38.14 0.24 5.84 16 9 N -0.66 -21.83 5.26 -303.55 -1.60 -23.43 16 10 C 0.52 23.62 6.99 87.66 0.61 24.23 16 11 O -0.56 -31.27 12.90 -3.05 -0.04 -31.31 16 12 C 0.00 -0.15 2.24 -12.29 -0.03 -0.17 16 13 H 0.08 3.23 7.20 -2.39 -0.02 3.22 16 14 C -0.14 -5.35 8.57 71.98 0.62 -4.74 16 15 C -0.53 -31.87 8.96 25.60 0.23 -31.64 16 16 H 0.03 1.95 7.00 -2.91 -0.02 1.93 16 17 C 0.01 0.36 5.45 84.65 0.46 0.82 16 18 N -0.95 -61.83 13.96 21.45 0.30 -61.53 16 19 Si 0.96 42.73 24.37 68.60 1.67 44.41 16 20 H -0.26 -10.77 6.87 99.48 0.68 -10.09 16 21 H -0.30 -13.48 7.11 99.48 0.71 -12.78 16 22 H -0.23 -8.48 6.53 99.48 0.65 -7.83 16 23 C -0.20 -7.59 8.63 22.49 0.19 -7.39 16 24 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 1.19 7.66 -2.39 -0.02 1.17 16 28 H 0.07 1.20 7.66 -2.38 -0.02 1.18 16 29 H 0.16 2.39 6.29 -2.91 -0.02 2.37 16 30 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 31 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 32 H 0.43 9.98 8.11 -92.71 -0.75 9.23 16 33 H 0.09 2.38 7.47 -2.39 -0.02 2.36 16 34 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 1.92 3.27 -2.39 -0.01 1.91 16 36 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 37 H 0.10 4.79 6.23 -2.91 -0.02 4.77 16 Total: -1.00 -84.48 303.59 3.91 -80.57 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.26 Total: 21.74 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 4.26 Total: -18.69 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -1.30 Total: -84.95 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -0.98 Total: -43.07 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.67 Total: 44.41 kcal Total: -84.48 3.91 -80.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596858355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.548 kcal (2) G-P(sol) polarization free energy of solvation -84.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds