Wall clock time and date at job start Mon Mar 30 2020 07:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42906 * 109.46913 * 2 1 4 4 C 1.35901 * 116.99900 * 180.02562 * 3 2 1 5 5 C 1.38809 * 120.01998 * 0.02562 * 4 3 2 6 6 C 1.38172 * 120.08469 * 179.97438 * 5 4 3 7 7 C 1.38164 * 120.11987 * 359.74575 * 6 5 4 8 8 C 1.38886 * 120.04517 * 0.51275 * 7 6 5 9 9 N 1.39919 * 120.04273 * 179.76794 * 8 7 6 10 10 C 1.34783 * 119.99751 * 214.81091 * 9 8 7 11 11 O 1.21280 * 119.99881 * 355.37762 * 10 9 8 12 12 C 1.50699 * 119.99773 * 175.37469 * 10 9 8 13 13 H 1.08992 * 109.47635 * 60.00025 * 12 10 9 14 14 C 1.53007 * 109.46948 * 300.00121 * 12 10 9 15 15 C 1.50699 * 109.47023 * 180.02562 * 12 10 9 16 16 H 1.08000 * 119.99893 * 359.97438 * 15 12 10 17 17 C 1.37873 * 120.00107 * 179.97438 * 15 12 10 18 18 N 1.31522 * 120.00072 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 120.00408 * 179.97438 * 17 15 12 20 20 H 1.48509 * 109.46520 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47265 * 119.99523 * 19 17 15 22 22 H 1.48497 * 109.47299 * 240.00165 * 19 17 15 23 23 C 1.38577 * 120.02093 * 180.02562 * 4 3 2 24 24 H 1.09002 * 109.47561 * 59.99834 * 1 2 3 25 25 H 1.09002 * 109.47143 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47295 * 299.99627 * 1 2 3 27 27 H 1.09001 * 109.47114 * 240.00690 * 2 1 3 28 28 H 1.09002 * 109.47561 * 120.00166 * 2 1 3 29 29 H 1.08004 * 119.95977 * 359.96029 * 5 4 3 30 30 H 1.08002 * 119.93642 * 180.02562 * 6 5 4 31 31 H 1.08007 * 119.97383 * 180.27892 * 7 6 5 32 32 H 0.96999 * 120.00177 * 34.81629 * 9 8 7 33 33 H 1.09002 * 109.47323 * 300.00092 * 14 12 10 34 34 H 1.08996 * 109.47092 * 60.00234 * 14 12 10 35 35 H 1.09003 * 109.47052 * 180.02562 * 14 12 10 36 36 H 0.96998 * 119.99842 * 179.97438 * 18 17 15 37 37 H 1.08006 * 120.06189 * 0.04195 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3535 1.5254 -0.0005 5 6 4.1995 0.4249 -0.0016 6 6 5.5695 0.6044 -0.0027 7 6 6.1017 1.8795 -0.0080 8 6 5.2601 2.9843 -0.0016 9 7 5.7991 4.2755 -0.0021 10 6 5.1778 5.2653 0.6694 11 8 4.1091 5.0577 1.2038 12 6 5.8112 6.6300 0.7562 13 1 5.9420 7.0344 -0.2475 14 6 7.1743 6.5169 1.4420 15 6 4.9217 7.5467 1.5557 16 1 3.9906 7.1782 1.9602 17 6 5.2965 8.8560 1.7709 18 7 6.4306 9.3047 1.2787 19 14 4.1935 9.9927 2.7614 20 1 2.9847 9.2502 3.2007 21 1 4.9316 10.4846 3.9523 22 1 3.7876 11.1463 1.9191 23 6 3.8836 2.8058 0.0000 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.8932 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 3.7863 -0.5730 -0.0013 30 1 6.2255 -0.2535 -0.0039 31 1 7.1729 2.0171 -0.0134 32 1 6.6198 4.4583 -0.4857 33 1 7.0436 6.1125 2.4457 34 1 7.8179 5.8537 0.8640 35 1 7.6323 7.5040 1.5052 36 1 6.6941 10.2259 1.4298 37 1 3.2269 3.6633 0.0015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596858356.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:06 Heat of formation + Delta-G solvation = -56.170338 kcal Electronic energy + Delta-G solvation = -19323.676503 eV Core-core repulsion = 16259.160052 eV Total energy + Delta-G solvation = -3064.516451 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.28238 -39.11302 -37.14614 -33.96745 -33.82740 -32.02403 -30.77421 -29.55220 -28.71693 -25.18013 -24.13302 -23.03948 -22.41629 -21.08750 -19.41298 -18.38661 -16.41441 -16.35178 -16.11064 -15.86221 -15.42418 -15.29733 -14.52946 -14.26789 -13.43890 -13.36796 -13.27332 -13.03692 -12.71808 -12.50875 -12.07219 -12.05855 -11.60202 -11.55438 -11.07221 -10.94258 -10.86815 -10.69311 -10.66650 -10.32449 -9.99905 -9.79471 -9.01092 -8.70486 -8.38205 -8.13084 -7.76946 -6.06545 -4.10022 1.51121 1.63271 3.16840 3.31674 3.39307 3.47461 3.50771 3.78480 4.07015 4.45797 4.78951 4.80530 5.02945 5.05022 5.18943 5.27221 5.30905 5.41776 5.57824 5.64143 5.74214 5.87072 5.89394 6.24237 6.46539 6.48555 6.55865 6.64378 6.67559 6.77490 6.87904 7.23409 7.41011 7.59662 7.70552 7.91239 8.05799 8.31681 8.98887 9.04524 9.55910 11.01161 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025176 B = 0.004538 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.885976 B = 6169.071772 C = 7151.078724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.314 6.314 4 C 0.145 3.855 5 C -0.238 4.238 6 C -0.064 4.064 7 C -0.192 4.192 8 C 0.201 3.799 9 N -0.687 5.687 10 C 0.517 3.483 11 O -0.519 6.519 12 C 0.031 3.969 13 H 0.057 0.943 14 C -0.134 4.134 15 C -0.502 4.502 16 H 0.076 0.924 17 C 0.059 3.941 18 N -0.896 5.896 19 Si 0.900 3.100 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.160 4.160 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.409 0.591 33 H 0.032 0.968 34 H 0.013 0.987 35 H 0.095 0.905 36 H 0.261 0.739 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.220 -17.844 -4.771 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.228 6.228 4 C 0.100 3.900 5 C -0.258 4.258 6 C -0.083 4.083 7 C -0.213 4.213 8 C 0.105 3.895 9 N -0.333 5.333 10 C 0.308 3.692 11 O -0.392 6.392 12 C 0.010 3.990 13 H 0.074 0.926 14 C -0.192 4.192 15 C -0.541 4.541 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.536 5.536 19 Si 0.728 3.272 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.181 4.181 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.245 0.755 33 H 0.051 0.949 34 H 0.032 0.968 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.050 -17.573 -4.344 18.357 hybrid contribution 0.096 0.427 0.296 0.529 sum -2.954 -17.146 -4.047 17.863 Atomic orbital electron populations 1.21775 0.92955 1.02545 1.03695 1.22731 0.95731 0.82373 1.01145 1.86102 1.19284 1.28770 1.88636 1.18762 0.82053 0.93649 0.95566 1.21075 0.94375 0.97566 1.12774 1.20605 0.94139 0.96396 0.97178 1.20826 0.99398 0.91614 1.09477 1.17588 0.91436 0.85254 0.95248 1.44136 1.29069 1.07055 1.53023 1.22342 0.84826 0.87024 0.74993 1.90553 1.21569 1.82324 1.44746 1.18919 0.94545 0.86151 0.99361 0.92571 1.21768 0.96332 1.02986 0.98107 1.21171 1.05900 0.94300 1.32714 0.90602 1.24944 0.95358 0.97990 0.95878 1.69876 1.21692 1.16173 1.45809 0.86382 0.80821 0.80318 0.79669 1.19507 1.21014 1.20991 1.20558 0.94439 0.95926 1.07200 0.91523 0.90593 0.91423 0.92241 0.92200 0.86011 0.85873 0.85767 0.75485 0.94856 0.96781 0.88599 0.92938 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.15 0.38 -0.92 16 2 C 0.06 0.58 5.46 37.15 0.20 0.78 16 3 O -0.31 -4.83 10.13 -19.43 -0.20 -5.02 16 4 C 0.15 2.35 6.68 -39.25 -0.26 2.09 16 5 C -0.24 -3.16 9.04 -39.39 -0.36 -3.52 16 6 C -0.06 -0.81 10.03 -39.63 -0.40 -1.20 16 7 C -0.19 -2.71 9.96 -39.37 -0.39 -3.10 16 8 C 0.20 3.50 6.30 -83.72 -0.53 2.97 16 9 N -0.69 -12.41 5.19 -9.88 -0.05 -12.46 16 10 C 0.52 11.79 6.99 -10.98 -0.08 11.72 16 11 O -0.52 -13.46 12.89 5.56 0.07 -13.39 16 12 C 0.03 0.77 2.64 -92.92 -0.25 0.52 16 13 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 14 C -0.13 -3.03 8.87 37.16 0.33 -2.70 16 15 C -0.50 -14.15 8.37 -34.44 -0.29 -14.43 16 16 H 0.08 2.26 6.75 -52.49 -0.35 1.91 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 18 N -0.90 -24.92 11.32 55.43 0.63 -24.29 16 19 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 C -0.16 -3.00 8.63 -39.25 -0.34 -3.34 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 27 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 28 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 29 H 0.12 1.27 6.29 -52.48 -0.33 0.94 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 31 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.41 6.10 8.39 -40.82 -0.34 5.75 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.01 0.25 7.67 -51.93 -0.40 -0.15 16 35 H 0.10 2.39 6.07 -51.93 -0.31 2.07 16 36 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.15 3.19 6.22 -52.48 -0.33 2.86 16 LS Contribution 310.81 15.07 4.68 4.68 Total: -1.00 -31.64 310.81 -6.91 -38.55 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.96 Total: 4.80 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -2.06 Total: -9.60 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.58 Total: -36.75 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.13 Total: -18.42 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.64 -6.91 -38.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596858356.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.625 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds