Wall clock time and date at job start Mon Mar 30 2020 07:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42906 * 109.46913 * 2 1 4 4 C 1.35901 * 116.99900 * 180.02562 * 3 2 1 5 5 C 1.38809 * 120.01998 * 0.02562 * 4 3 2 6 6 C 1.38172 * 120.08469 * 179.97438 * 5 4 3 7 7 C 1.38164 * 120.11987 * 359.74575 * 6 5 4 8 8 C 1.38886 * 120.04517 * 0.51275 * 7 6 5 9 9 N 1.39919 * 120.04273 * 179.76794 * 8 7 6 10 10 C 1.34783 * 119.99751 * 214.81091 * 9 8 7 11 11 O 1.21280 * 119.99881 * 355.37762 * 10 9 8 12 12 C 1.50699 * 119.99773 * 175.37469 * 10 9 8 13 13 H 1.08992 * 109.47635 * 60.00025 * 12 10 9 14 14 C 1.53007 * 109.46948 * 300.00121 * 12 10 9 15 15 C 1.50699 * 109.47023 * 180.02562 * 12 10 9 16 16 H 1.08000 * 119.99893 * 359.97438 * 15 12 10 17 17 C 1.37873 * 120.00107 * 179.97438 * 15 12 10 18 18 N 1.31522 * 120.00072 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 120.00408 * 179.97438 * 17 15 12 20 20 H 1.48509 * 109.46520 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47265 * 119.99523 * 19 17 15 22 22 H 1.48497 * 109.47299 * 240.00165 * 19 17 15 23 23 C 1.38577 * 120.02093 * 180.02562 * 4 3 2 24 24 H 1.09002 * 109.47561 * 59.99834 * 1 2 3 25 25 H 1.09002 * 109.47143 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47295 * 299.99627 * 1 2 3 27 27 H 1.09001 * 109.47114 * 240.00690 * 2 1 3 28 28 H 1.09002 * 109.47561 * 120.00166 * 2 1 3 29 29 H 1.08004 * 119.95977 * 359.96029 * 5 4 3 30 30 H 1.08002 * 119.93642 * 180.02562 * 6 5 4 31 31 H 1.08007 * 119.97383 * 180.27892 * 7 6 5 32 32 H 0.96999 * 120.00177 * 34.81629 * 9 8 7 33 33 H 1.09002 * 109.47323 * 300.00092 * 14 12 10 34 34 H 1.08996 * 109.47092 * 60.00234 * 14 12 10 35 35 H 1.09003 * 109.47052 * 180.02562 * 14 12 10 36 36 H 0.96998 * 119.99842 * 179.97438 * 18 17 15 37 37 H 1.08006 * 120.06189 * 0.04195 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3535 1.5254 -0.0005 5 6 4.1995 0.4249 -0.0016 6 6 5.5695 0.6044 -0.0027 7 6 6.1017 1.8795 -0.0080 8 6 5.2601 2.9843 -0.0016 9 7 5.7991 4.2755 -0.0021 10 6 5.1778 5.2653 0.6694 11 8 4.1091 5.0577 1.2038 12 6 5.8112 6.6300 0.7562 13 1 5.9420 7.0344 -0.2475 14 6 7.1743 6.5169 1.4420 15 6 4.9217 7.5467 1.5557 16 1 3.9906 7.1782 1.9602 17 6 5.2965 8.8560 1.7709 18 7 6.4306 9.3047 1.2787 19 14 4.1935 9.9927 2.7614 20 1 2.9847 9.2502 3.2007 21 1 4.9316 10.4846 3.9523 22 1 3.7876 11.1463 1.9191 23 6 3.8836 2.8058 0.0000 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.8932 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 3.7863 -0.5730 -0.0013 30 1 6.2255 -0.2535 -0.0039 31 1 7.1729 2.0171 -0.0134 32 1 6.6198 4.4583 -0.4857 33 1 7.0436 6.1125 2.4457 34 1 7.8179 5.8537 0.8640 35 1 7.6323 7.5040 1.5052 36 1 6.6941 10.2259 1.4298 37 1 3.2269 3.6633 0.0015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596858356.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:06 Heat of formation + Delta-G solvation = -76.602176 kcal Electronic energy + Delta-G solvation = -19324.562494 eV Core-core repulsion = 16259.160052 eV Total energy + Delta-G solvation = -3065.402442 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.61829 -40.51388 -38.42687 -35.84819 -35.45724 -32.88477 -32.67466 -30.73658 -29.99427 -27.23529 -25.39824 -24.35443 -23.69284 -22.34743 -21.05250 -19.61646 -18.35039 -17.91639 -17.10310 -17.04770 -16.87939 -16.69167 -16.31873 -15.92104 -14.91913 -14.72149 -14.43564 -14.31859 -14.27345 -13.58437 -13.38294 -13.10958 -13.07740 -12.97650 -12.69440 -12.60310 -12.55783 -12.25178 -12.06468 -11.93219 -11.74159 -11.15472 -11.04908 -10.62984 -10.34410 -9.40408 -8.99568 -8.18336 -6.28718 0.29759 0.48697 1.38001 1.40095 1.53484 1.79874 2.06538 2.37756 2.50825 2.85113 3.11611 3.89523 4.06149 4.08511 4.17983 4.21132 4.31414 4.37783 4.40885 4.60267 4.71768 4.73893 4.90510 4.92512 4.93658 4.99054 5.18525 5.33624 5.39371 5.40892 5.46841 5.51949 5.71221 5.88793 5.97011 6.16962 6.51837 6.61308 6.80056 7.31739 7.42770 8.87793 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025176 B = 0.004538 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.885976 B = 6169.071772 C = 7151.078724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.344 6.344 4 C 0.133 3.867 5 C -0.226 4.226 6 C -0.052 4.052 7 C -0.184 4.184 8 C 0.173 3.827 9 N -0.669 5.669 10 C 0.519 3.481 11 O -0.561 6.561 12 C 0.028 3.972 13 H 0.048 0.952 14 C -0.121 4.121 15 C -0.532 4.532 16 H 0.047 0.953 17 C 0.023 3.977 18 N -0.909 5.909 19 Si 0.955 3.045 20 H -0.282 1.282 21 H -0.272 1.272 22 H -0.273 1.273 23 C -0.197 4.197 24 H 0.059 0.941 25 H 0.108 0.892 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.157 0.843 30 H 0.171 0.829 31 H 0.154 0.846 32 H 0.425 0.575 33 H 0.022 0.978 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.266 0.734 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.872 -20.585 -5.077 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.259 6.259 4 C 0.087 3.913 5 C -0.245 4.245 6 C -0.071 4.071 7 C -0.205 4.205 8 C 0.078 3.922 9 N -0.315 5.315 10 C 0.310 3.690 11 O -0.438 6.438 12 C 0.007 3.993 13 H 0.066 0.934 14 C -0.179 4.179 15 C -0.570 4.570 16 H 0.065 0.935 17 C -0.177 4.177 18 N -0.548 5.548 19 Si 0.781 3.219 20 H -0.207 1.207 21 H -0.197 1.197 22 H -0.198 1.198 23 C -0.219 4.219 24 H 0.078 0.922 25 H 0.126 0.874 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.175 0.825 30 H 0.188 0.812 31 H 0.172 0.828 32 H 0.263 0.737 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.665 -20.343 -4.685 20.942 hybrid contribution -0.368 1.135 0.337 1.240 sum -2.033 -19.208 -4.347 19.799 Atomic orbital electron populations 1.21831 0.91880 1.04320 1.02786 1.23123 0.96714 0.80453 1.02694 1.86082 1.19191 1.31991 1.88626 1.18882 0.82963 0.93562 0.95878 1.21498 0.94566 0.98011 1.10414 1.21175 0.94352 0.97091 0.94442 1.21168 1.00427 0.91004 1.07852 1.17819 0.91462 0.85430 0.97507 1.43688 1.28994 1.06882 1.51955 1.21934 0.84316 0.87458 0.75315 1.90543 1.23264 1.83071 1.46953 1.18836 0.95168 0.86870 0.98438 0.93396 1.21583 0.95603 1.02643 0.98037 1.21289 1.05847 0.95809 1.34055 0.93499 1.25558 0.96598 0.98922 0.96617 1.69941 1.22240 1.16657 1.45965 0.85551 0.78896 0.78611 0.78872 1.20732 1.19728 1.19821 1.20425 0.94983 0.96043 1.10402 0.92177 0.87384 0.92641 0.90203 0.90832 0.82507 0.81195 0.82823 0.73651 0.95865 0.92494 0.90730 0.92461 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 10.28 71.98 0.74 -1.65 16 2 C 0.04 0.85 5.46 71.98 0.39 1.24 16 3 O -0.34 -10.71 10.13 -92.44 -0.94 -11.65 16 4 C 0.13 4.28 6.68 22.49 0.15 4.43 16 5 C -0.23 -5.22 9.04 22.39 0.20 -5.02 16 6 C -0.05 -1.06 10.03 22.24 0.22 -0.84 16 7 C -0.18 -4.60 9.96 22.41 0.22 -4.38 16 8 C 0.17 5.97 6.30 38.14 0.24 6.21 16 9 N -0.67 -24.32 5.19 -303.55 -1.58 -25.90 16 10 C 0.52 24.69 6.99 87.66 0.61 25.30 16 11 O -0.56 -31.20 12.89 -3.03 -0.04 -31.24 16 12 C 0.03 1.42 2.64 -12.28 -0.03 1.39 16 13 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 14 C -0.12 -5.46 8.87 71.98 0.64 -4.82 16 15 C -0.53 -31.20 8.37 25.60 0.21 -30.99 16 16 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 17 C 0.02 1.27 5.30 84.65 0.45 1.72 16 18 N -0.91 -50.90 11.32 21.45 0.24 -50.66 16 19 Si 0.95 45.43 29.54 68.60 2.03 47.46 16 20 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 C -0.20 -7.74 8.63 22.48 0.19 -7.54 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.08 1.19 7.66 -2.39 -0.02 1.17 16 28 H 0.07 1.19 7.66 -2.39 -0.02 1.17 16 29 H 0.16 2.48 6.29 -2.91 -0.02 2.46 16 30 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 32 H 0.42 12.20 8.39 -92.71 -0.78 11.42 16 33 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 2.02 7.67 -2.39 -0.02 2.00 16 35 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 36 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 37 H 0.10 4.93 6.22 -2.91 -0.02 4.91 16 Total: -1.00 -73.38 310.81 4.27 -69.11 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.30 Total: 17.82 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 4.25 Total: -14.95 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -1.33 Total: -76.55 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -0.98 Total: -42.89 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -73.38 4.27 -69.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596858356.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.489 kcal (2) G-P(sol) polarization free energy of solvation -73.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds