Wall clock time and date at job start Mon Mar 30 2020 06:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35966 * 117.00324 * 2 1 4 4 C 1.38559 * 120.08211 * 0.25312 * 3 2 1 5 5 C 1.38244 * 120.01504 * 180.29294 * 4 3 2 6 6 C 1.38279 * 120.17826 * 359.70984 * 5 4 3 7 7 C 1.38199 * 120.16395 * 0.02562 * 6 5 4 8 8 C 1.38718 * 119.98550 * 0.02562 * 7 6 5 9 9 N 1.40118 * 120.09059 * 179.97438 * 8 7 6 10 10 C 1.46506 * 119.99946 * 267.47712 * 9 8 7 11 11 C 1.34776 * 120.00401 * 87.47569 * 9 8 7 12 12 O 1.21294 * 120.00037 * 184.25400 * 11 9 8 13 13 C 1.50696 * 119.99683 * 4.53170 * 11 9 8 14 14 H 1.09000 * 109.47224 * 326.53049 * 13 11 9 15 15 C 1.52997 * 109.47511 * 86.53515 * 13 11 9 16 16 C 1.50701 * 109.46884 * 206.53480 * 13 11 9 17 17 H 1.08004 * 120.00099 * 0.02562 * 16 13 11 18 18 C 1.37882 * 120.00018 * 179.97438 * 16 13 11 19 19 N 1.31512 * 119.99737 * 180.02562 * 18 16 13 20 20 Si 1.86793 * 119.99877 * 0.02562 * 18 16 13 21 21 H 1.48507 * 109.47140 * 89.99807 * 20 18 16 22 22 H 1.48495 * 109.47231 * 209.99846 * 20 18 16 23 23 H 1.48501 * 109.47512 * 329.99868 * 20 18 16 24 24 H 1.09004 * 109.47072 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46930 * 300.00146 * 1 2 3 26 26 H 1.09005 * 109.46805 * 59.99883 * 1 2 3 27 27 H 1.08007 * 119.99110 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.91181 * 179.72126 * 5 4 3 29 29 H 1.07998 * 119.91708 * 180.02562 * 6 5 4 30 30 H 1.08004 * 120.00458 * 179.97438 * 7 6 5 31 31 H 1.09000 * 109.47301 * 264.79167 * 10 9 8 32 32 H 1.09003 * 109.47110 * 24.78666 * 10 9 8 33 33 H 1.09000 * 109.47554 * 144.78567 * 10 9 8 34 34 H 1.08999 * 109.47087 * 66.92607 * 15 13 11 35 35 H 1.08998 * 109.47465 * 186.92749 * 15 13 11 36 36 H 1.09000 * 109.47293 * 306.93202 * 15 13 11 37 37 H 0.97003 * 119.99566 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2114 0.0000 4 6 1.2935 2.3746 0.0053 5 6 1.9226 3.6056 -0.0008 6 6 3.3033 3.6806 -0.0062 7 6 4.0615 2.5251 -0.0060 8 6 3.4373 1.2863 -0.0009 9 7 4.2039 0.1134 -0.0013 10 6 4.5531 -0.5330 -1.2687 11 6 4.6201 -0.4200 1.1644 12 8 5.3475 -1.3906 1.1617 13 6 4.1765 0.1856 2.4710 14 1 4.0703 1.2641 2.3542 15 6 2.8320 -0.4176 2.8825 16 6 5.2042 -0.1057 3.5341 17 1 6.0901 -0.6723 3.2880 18 6 5.0139 0.3521 4.8208 19 7 5.9110 0.0984 5.7483 20 14 3.4820 1.3327 5.2462 21 1 2.4064 0.4062 5.6820 22 1 3.7918 2.2831 6.3444 23 1 3.0300 2.0884 4.0505 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2148 2.3195 0.0099 28 1 1.3341 4.5111 -0.0012 29 1 3.7904 4.6445 -0.0106 30 1 5.1398 2.5867 -0.0106 31 1 3.8302 -1.3191 -1.4870 32 1 4.5390 0.2062 -2.0697 33 1 5.5501 -0.9672 -1.1927 34 1 2.9646 -1.4735 3.1186 35 1 2.4521 0.1059 3.7598 36 1 2.1216 -0.3153 2.0622 37 1 5.7770 0.4201 6.6536 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596859550.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:31 Heat of formation + Delta-G solvation = -55.262503 kcal Electronic energy + Delta-G solvation = -20834.959280 eV Core-core repulsion = 17770.482195 eV Total energy + Delta-G solvation = -3064.477085 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.78849 -40.27474 -38.36266 -36.32881 -35.84683 -33.34284 -31.29538 -30.79301 -28.30270 -27.87063 -27.22664 -24.62118 -23.32564 -23.05790 -20.59940 -18.94985 -18.88002 -17.99958 -17.39675 -17.36731 -16.56218 -16.48321 -15.93981 -15.74813 -15.31205 -14.97046 -14.81542 -14.47035 -14.07251 -13.94759 -13.57326 -13.49945 -13.21472 -12.91436 -12.86647 -12.58887 -12.53533 -12.25172 -11.98063 -11.96318 -11.52237 -11.27040 -10.86148 -10.68480 -9.88369 -9.78112 -9.11209 -8.32046 -6.39144 0.25232 0.47126 1.27791 1.33648 1.45565 1.70940 2.05695 2.29950 2.39755 2.75878 3.01200 3.72084 3.94273 4.06159 4.30149 4.34789 4.38084 4.43985 4.44456 4.45741 4.55228 4.60331 4.62754 4.73586 4.76564 4.83043 4.85645 4.93666 5.29908 5.34103 5.39774 5.47605 5.53618 5.59403 5.83087 6.16954 6.34670 6.60523 6.73749 7.19779 7.34092 8.85742 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.008803 C = 0.007804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.313976 B = 3180.128927 C = 3587.262179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.119 3.881 4 C -0.203 4.203 5 C -0.070 4.070 6 C -0.148 4.148 7 C -0.092 4.092 8 C 0.072 3.928 9 N -0.572 5.572 10 C 0.092 3.908 11 C 0.534 3.466 12 O -0.579 6.579 13 C 0.006 3.994 14 H 0.056 0.944 15 C -0.135 4.135 16 C -0.520 4.520 17 H 0.026 0.974 18 C 0.014 3.986 19 N -0.947 5.947 20 Si 0.953 3.047 21 H -0.262 1.262 22 H -0.289 1.289 23 H -0.238 1.238 24 H 0.110 0.890 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.161 0.839 28 H 0.165 0.835 29 H 0.154 0.846 30 H 0.126 0.874 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.331 9.972 -15.646 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.072 3.928 4 C -0.221 4.221 5 C -0.088 4.088 6 C -0.167 4.167 7 C -0.111 4.111 8 C -0.018 4.018 9 N -0.301 5.301 10 C -0.049 4.049 11 C 0.326 3.674 12 O -0.458 6.458 13 C -0.016 4.016 14 H 0.073 0.927 15 C -0.193 4.193 16 C -0.558 4.558 17 H 0.044 0.956 18 C -0.183 4.183 19 N -0.587 5.587 20 Si 0.777 3.223 21 H -0.188 1.188 22 H -0.216 1.216 23 H -0.161 1.161 24 H 0.128 0.872 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.178 0.822 28 H 0.182 0.818 29 H 0.172 0.828 30 H 0.144 0.856 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.794 9.226 -15.506 23.980 hybrid contribution 0.070 -0.173 0.652 0.678 sum -15.724 9.053 -14.854 23.449 Atomic orbital electron populations 1.23384 0.76467 1.05354 1.02686 1.86160 1.23450 1.26754 1.88135 1.19474 0.91079 0.85847 0.96383 1.21532 1.01408 0.91254 1.07954 1.21454 0.94463 0.98049 0.94830 1.21307 0.94450 0.98162 1.02769 1.21425 1.00789 0.91260 0.97676 1.17204 0.87580 0.86374 1.10687 1.45256 1.52909 1.25525 1.06453 1.21702 1.00697 0.98370 0.84157 1.21219 0.77768 0.82425 0.86015 1.90540 1.37979 1.29396 1.87836 1.19089 0.95066 0.97205 0.90202 0.92668 1.21968 0.96230 1.00348 1.00729 1.21003 1.05707 1.34892 0.94233 0.95568 1.25915 1.00251 0.96674 0.95453 1.70056 1.37592 1.47774 1.03237 0.85787 0.78933 0.78863 0.78697 1.18767 1.21574 1.16131 0.87214 0.91677 0.90460 0.82168 0.81774 0.82809 0.85635 0.92446 0.88555 0.92315 0.94135 0.93248 0.90735 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -9.17 8.47 -93.16 -0.79 -9.95 16 3 C 0.12 3.31 5.93 22.60 0.13 3.45 16 4 C -0.20 -4.09 9.04 22.35 0.20 -3.89 16 5 C -0.07 -1.25 10.04 22.28 0.22 -1.02 16 6 C -0.15 -3.14 10.04 22.27 0.22 -2.92 16 7 C -0.09 -2.64 9.49 22.38 0.21 -2.42 16 8 C 0.07 2.36 3.58 38.19 0.14 2.50 16 9 N -0.57 -22.18 2.66 -654.10 -1.74 -23.92 16 10 C 0.09 2.92 10.40 127.77 1.33 4.25 16 11 C 0.53 26.69 6.72 87.66 0.59 27.28 16 12 O -0.58 -33.72 15.50 -3.07 -0.05 -33.77 16 13 C 0.01 0.31 1.62 -12.29 -0.02 0.29 16 14 H 0.06 2.72 5.73 -2.39 -0.01 2.71 16 15 C -0.14 -6.19 8.56 71.98 0.62 -5.58 16 16 C -0.52 -32.88 8.90 25.60 0.23 -32.65 16 17 H 0.03 1.92 7.31 -2.91 -0.02 1.90 16 18 C 0.01 0.87 5.45 84.66 0.46 1.33 16 19 N -0.95 -61.98 13.96 21.45 0.30 -61.68 16 20 Si 0.95 45.16 24.30 68.60 1.67 46.82 16 21 H -0.26 -11.72 6.93 99.48 0.69 -11.03 16 22 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 23 H -0.24 -10.15 6.53 99.48 0.65 -9.50 16 24 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 25 H 0.06 0.95 7.65 -2.39 -0.02 0.93 16 26 H 0.08 0.89 7.68 -2.38 -0.02 0.87 16 27 H 0.16 2.16 6.30 -2.91 -0.02 2.14 16 28 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 29 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.10 2.36 8.01 -2.39 -0.02 2.34 16 33 H 0.06 2.03 7.53 -2.39 -0.02 2.01 16 34 H 0.04 1.96 8.13 -2.39 -0.02 1.94 16 35 H 0.05 2.18 3.49 -2.39 -0.01 2.17 16 36 H 0.07 2.92 5.27 -2.39 -0.01 2.91 16 37 H 0.27 16.22 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -83.30 300.91 5.84 -77.46 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 1.00 Total: 13.05 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 5.45 Total: -8.02 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -1.44 Total: -85.59 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -0.84 Total: -43.72 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.67 Total: 46.82 kcal Total: -83.30 5.84 -77.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596859550.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.202 kcal (2) G-P(sol) polarization free energy of solvation -83.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds