Wall clock time and date at job start Mon Mar 30 2020 06:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35975 * 116.99849 * 2 1 4 4 C 1.38558 * 120.08368 * 0.26915 * 3 2 1 5 5 C 1.38243 * 120.01398 * 180.30092 * 4 3 2 6 6 C 1.38276 * 120.17905 * 359.72157 * 5 4 3 7 7 C 1.38202 * 120.16762 * 359.97438 * 6 5 4 8 8 C 1.38726 * 119.97984 * 0.02562 * 7 6 5 9 9 N 1.40128 * 120.08678 * 180.02562 * 8 7 6 10 10 C 1.46497 * 119.99971 * 269.99599 * 9 8 7 11 11 C 1.34770 * 119.99771 * 89.99798 * 9 8 7 12 12 O 1.21295 * 120.00191 * 0.02562 * 11 9 8 13 13 C 1.50698 * 120.00019 * 179.97438 * 11 9 8 14 14 H 1.09001 * 109.47122 * 60.00417 * 13 11 9 15 15 C 1.53006 * 109.47184 * 300.00531 * 13 11 9 16 16 C 1.50697 * 109.47576 * 180.02562 * 13 11 9 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 13 11 18 18 C 1.37876 * 120.00428 * 180.02562 * 16 13 11 19 19 N 1.31510 * 119.99600 * 0.02562 * 18 16 13 20 20 Si 1.86805 * 120.00227 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.46938 * 59.99973 * 20 18 16 22 22 H 1.48494 * 109.46914 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46873 * 299.99981 * 20 18 16 24 24 H 1.09002 * 109.46800 * 60.00615 * 1 2 3 25 25 H 1.09001 * 109.46842 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47183 * 300.00088 * 1 2 3 27 27 H 1.08000 * 119.98986 * 0.03112 * 4 3 2 28 28 H 1.07997 * 119.91237 * 179.74855 * 5 4 3 29 29 H 1.08000 * 119.91872 * 179.97438 * 6 5 4 30 30 H 1.07988 * 120.01004 * 179.97438 * 7 6 5 31 31 H 1.09000 * 109.47590 * 270.00200 * 10 9 8 32 32 H 1.09004 * 109.46902 * 30.00165 * 10 9 8 33 33 H 1.08995 * 109.46944 * 149.99637 * 10 9 8 34 34 H 1.09001 * 109.47002 * 299.99404 * 15 13 11 35 35 H 1.08993 * 109.46955 * 59.99842 * 15 13 11 36 36 H 1.09000 * 109.47050 * 179.97438 * 15 13 11 37 37 H 0.97006 * 120.00212 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3747 0.0056 5 6 1.9224 3.6057 -0.0007 6 6 3.3031 3.6808 -0.0068 7 6 4.0615 2.5254 -0.0061 8 6 3.4373 1.2865 0.0002 9 7 4.2040 0.1136 0.0015 10 6 4.6003 -0.5038 -1.2666 11 6 4.5768 -0.4465 1.1692 12 8 4.2482 0.0644 2.2191 13 6 5.4009 -1.7082 1.1706 14 1 6.3428 -1.5275 0.6528 15 6 4.6313 -2.8208 0.4560 16 6 5.6803 -2.1242 2.5918 17 1 5.2989 -1.5342 3.4121 18 6 6.4228 -3.2580 2.8450 19 7 6.8877 -3.9761 1.8462 20 14 6.7686 -3.7740 4.6068 21 1 5.4849 -4.0212 5.3111 22 1 7.5818 -5.0165 4.6081 23 1 7.5144 -2.6941 5.3015 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.2148 2.3195 0.0105 28 1 1.3339 4.5112 -0.0004 29 1 3.7902 4.6447 -0.0121 30 1 5.1396 2.5870 -0.0113 31 1 3.8385 -1.2192 -1.5762 32 1 4.7054 0.2679 -2.0292 33 1 5.5520 -1.0193 -1.1378 34 1 3.6893 -3.0016 0.9739 35 1 4.4289 -2.5202 -0.5720 36 1 5.2275 -3.7333 0.4566 37 1 7.4105 -4.7736 2.0242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596859551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:34 Heat of formation + Delta-G solvation = -55.105810 kcal Electronic energy + Delta-G solvation = -20290.170649 eV Core-core repulsion = 17225.700359 eV Total energy + Delta-G solvation = -3064.470290 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.68418 -40.22796 -38.30497 -36.40302 -35.80588 -32.80641 -31.22305 -30.65375 -28.20231 -27.70592 -27.08495 -24.99627 -23.09817 -22.94460 -20.58575 -18.99160 -18.42625 -17.67902 -17.52577 -17.25405 -16.64056 -16.40486 -15.93709 -15.59735 -15.30790 -14.83645 -14.71463 -14.32056 -14.11850 -13.59450 -13.47078 -13.05309 -12.97912 -12.95207 -12.73431 -12.56586 -12.28349 -12.23723 -12.05651 -12.00834 -11.98144 -11.04551 -10.63802 -10.33134 -9.87047 -9.73939 -9.14158 -8.15532 -6.26219 0.26019 0.45062 1.39341 1.41524 1.50105 1.85942 2.13783 2.39748 2.46487 2.75435 3.13245 3.90242 3.97317 4.16198 4.25069 4.28484 4.35619 4.39326 4.44563 4.58627 4.65806 4.67400 4.69945 4.79914 4.86098 4.97997 5.06199 5.28971 5.38833 5.46662 5.50607 5.70576 5.73986 5.85857 5.99449 6.17791 6.49618 6.52683 6.80648 7.38396 7.49967 8.90243 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.027102 B = 0.005589 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.888958 B = 5008.647413 C = 5149.798931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.111 3.889 4 C -0.206 4.206 5 C -0.075 4.075 6 C -0.149 4.149 7 C -0.092 4.092 8 C 0.076 3.924 9 N -0.575 5.575 10 C 0.085 3.915 11 C 0.524 3.476 12 O -0.583 6.583 13 C 0.033 3.967 14 H 0.043 0.957 15 C -0.125 4.125 16 C -0.533 4.533 17 H 0.044 0.956 18 C 0.022 3.978 19 N -0.909 5.909 20 Si 0.956 3.044 21 H -0.278 1.278 22 H -0.270 1.270 23 H -0.276 1.276 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.059 0.941 27 H 0.156 0.844 28 H 0.166 0.834 29 H 0.157 0.843 30 H 0.127 0.873 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.013 0.987 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.037 12.103 -10.263 19.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.064 3.936 4 C -0.225 4.225 5 C -0.092 4.092 6 C -0.167 4.167 7 C -0.111 4.111 8 C -0.014 4.014 9 N -0.305 5.305 10 C -0.056 4.056 11 C 0.316 3.684 12 O -0.462 6.462 13 C 0.012 3.988 14 H 0.061 0.939 15 C -0.183 4.183 16 C -0.571 4.571 17 H 0.062 0.938 18 C -0.177 4.177 19 N -0.548 5.548 20 Si 0.782 3.218 21 H -0.204 1.204 22 H -0.195 1.195 23 H -0.202 1.202 24 H 0.097 0.903 25 H 0.127 0.873 26 H 0.078 0.922 27 H 0.174 0.826 28 H 0.183 0.817 29 H 0.174 0.826 30 H 0.145 0.855 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.032 0.968 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.009 11.966 -9.765 18.967 hybrid contribution 0.167 -0.551 1.059 1.206 sum -10.841 11.415 -8.706 17.990 Atomic orbital electron populations 1.23328 0.76559 1.05193 1.02387 1.86157 1.23469 1.27178 1.88425 1.19651 0.91631 0.85725 0.96631 1.21498 1.01163 0.91455 1.08418 1.21419 0.94618 0.97741 0.95466 1.21305 0.94333 0.98157 1.02954 1.21382 1.00659 0.91166 0.97891 1.17422 0.87717 0.87403 1.08897 1.45406 1.53009 1.24894 1.07234 1.22083 1.00983 0.98780 0.83772 1.21851 0.78593 0.85799 0.82119 1.90484 1.57444 1.65044 1.33225 1.18732 0.93784 0.88658 0.97578 0.93897 1.21768 0.97897 1.00803 0.97817 1.21233 1.33688 1.10021 0.92160 0.93769 1.25580 0.95059 0.95878 1.01215 1.69935 1.36130 1.16865 1.31826 0.85647 0.78143 0.77749 0.80302 1.20362 1.19485 1.20155 0.90320 0.87336 0.92209 0.82626 0.81697 0.82551 0.85524 0.91812 0.89215 0.90376 0.96816 0.91921 0.90882 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.34 -11.57 10.24 -93.27 -0.96 -12.53 16 3 C 0.11 3.68 6.70 22.60 0.15 3.83 16 4 C -0.21 -5.03 9.04 22.35 0.20 -4.83 16 5 C -0.07 -1.53 10.04 22.28 0.22 -1.30 16 6 C -0.15 -3.44 10.04 22.27 0.22 -3.21 16 7 C -0.09 -2.84 9.96 22.38 0.22 -2.62 16 8 C 0.08 2.80 4.48 38.19 0.17 2.97 16 9 N -0.57 -23.49 2.66 -654.11 -1.74 -25.23 16 10 C 0.08 2.72 8.80 127.77 1.12 3.85 16 11 C 0.52 27.00 7.04 87.66 0.62 27.62 16 12 O -0.58 -34.57 15.43 -3.07 -0.05 -34.62 16 13 C 0.03 1.80 1.83 -12.29 -0.02 1.78 16 14 H 0.04 2.36 7.40 -2.39 -0.02 2.34 16 15 C -0.13 -6.12 8.60 71.98 0.62 -5.50 16 16 C -0.53 -32.47 8.37 25.60 0.21 -32.26 16 17 H 0.04 2.89 6.75 -2.91 -0.02 2.87 16 18 C 0.02 1.27 5.30 84.66 0.45 1.72 16 19 N -0.91 -52.12 11.32 21.45 0.24 -51.88 16 20 Si 0.96 46.26 29.54 68.60 2.03 48.28 16 21 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 24 H 0.08 1.24 7.68 -2.39 -0.02 1.22 16 25 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.06 1.19 7.65 -2.39 -0.02 1.17 16 27 H 0.16 2.77 6.30 -2.91 -0.02 2.75 16 28 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 29 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.13 3.81 8.06 -2.92 -0.02 3.79 16 31 H 0.06 1.96 6.95 -2.39 -0.02 1.94 16 32 H 0.09 2.27 8.05 -2.38 -0.02 2.25 16 33 H 0.08 2.59 6.01 -2.39 -0.01 2.58 16 34 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 2.53 4.53 -2.39 -0.01 2.52 16 36 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 37 H 0.27 14.39 8.31 -92.70 -0.77 13.62 16 Total: -1.00 -77.06 306.69 5.91 -71.15 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.07 Total: 11.24 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 5.31 Total: -6.42 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -1.50 Total: -77.10 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -1.00 Total: -47.15 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -77.06 5.91 -71.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596859551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.041 kcal (2) G-P(sol) polarization free energy of solvation -77.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds