Wall clock time and date at job start Mon Mar 30 2020 06:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47468 * 2 1 4 4 C 1.50706 * 109.46813 * 240.00008 * 2 1 3 5 5 H 1.07996 * 119.99901 * 245.47888 * 4 2 1 6 6 C 1.37877 * 119.99901 * 65.48628 * 4 2 1 7 7 N 1.31518 * 119.99930 * 9.65614 * 6 4 2 8 8 Si 1.86801 * 119.99712 * 189.65195 * 6 4 2 9 9 H 1.48497 * 109.46884 * 84.99692 * 8 6 4 10 10 H 1.48507 * 109.46903 * 204.99189 * 8 6 4 11 11 H 1.48494 * 109.47251 * 324.99381 * 8 6 4 12 12 C 1.50705 * 109.46963 * 120.00576 * 2 1 3 13 13 O 1.21274 * 119.99939 * 119.99667 * 12 2 1 14 14 N 1.34775 * 119.99382 * 299.99688 * 12 2 1 15 15 C 1.47417 * 125.65351 * 359.95512 * 14 12 2 16 16 C 1.55120 * 104.94722 * 204.04251 * 15 14 12 17 17 C 1.55162 * 101.48398 * 323.22310 * 16 15 14 18 18 H 1.08998 * 110.72089 * 276.83008 * 17 16 15 19 19 C 1.50700 * 110.72033 * 153.73237 * 17 16 15 20 20 C 1.34511 * 125.78858 * 123.84293 * 19 17 16 21 21 C 1.41384 * 106.84313 * 180.30035 * 20 19 17 22 22 C 1.34519 * 106.83589 * 359.57018 * 21 20 19 23 23 O 1.34305 * 125.78885 * 303.89007 * 19 17 16 24 24 C 1.47020 * 125.64513 * 180.02562 * 14 12 2 25 25 H 1.09006 * 109.46665 * 65.89379 * 1 2 3 26 26 H 1.08999 * 109.47438 * 185.89275 * 1 2 3 27 27 H 1.09004 * 109.47192 * 305.90043 * 1 2 3 28 28 H 0.96997 * 119.99589 * 179.97438 * 7 6 4 29 29 H 1.08997 * 110.37368 * 323.00763 * 15 14 12 30 30 H 1.09002 * 110.36759 * 85.21545 * 15 14 12 31 31 H 1.09003 * 111.16364 * 205.13585 * 16 15 14 32 32 H 1.09000 * 110.94016 * 81.21233 * 16 15 14 33 33 H 1.08006 * 126.58274 * 0.03535 * 20 19 17 34 34 H 1.07997 * 126.58411 * 179.73748 * 21 20 19 35 35 H 1.07998 * 125.78752 * 180.11493 * 22 21 20 36 36 H 1.09002 * 109.88542 * 59.48337 * 24 14 12 37 37 H 1.08998 * 109.88271 * 298.31983 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5782 -1.6372 -1.1339 6 6 1.7949 -0.1771 -2.4796 7 7 1.3019 1.0368 -2.5934 8 14 2.1737 -1.1788 -4.0102 9 1 1.0199 -2.0595 -4.3234 10 1 2.4216 -0.2627 -5.1525 11 1 3.3807 -2.0102 -3.7715 12 6 2.0323 -0.7106 1.2304 13 8 2.7295 -1.6966 1.1191 14 7 1.7067 -0.2501 2.4545 15 6 0.8718 0.9324 2.7337 16 6 1.2931 1.3934 4.1536 17 6 1.5404 0.0338 4.8591 18 1 0.6041 -0.3856 5.2272 19 6 2.5314 0.1892 5.9838 20 6 2.3220 -0.1482 7.2690 21 6 3.5045 0.1723 7.9746 22 6 4.3692 0.6776 7.0765 23 8 3.7730 0.6890 5.8731 24 6 2.1265 -0.8431 3.7326 25 1 -0.3633 0.4198 -0.9381 26 1 -0.3634 -1.0222 0.1055 27 1 -0.3634 0.6026 0.8325 28 1 1.1353 1.4121 -3.4722 29 1 1.0703 1.7178 2.0044 30 1 -0.1843 0.6626 2.7214 31 1 0.4908 1.9467 4.6419 32 1 2.2073 1.9858 4.1156 33 1 1.4215 -0.5772 7.6833 34 1 3.6808 0.0351 9.0312 35 1 5.3709 1.0211 7.2884 36 1 3.2146 -0.8519 3.7976 37 1 1.7399 -1.8589 3.8147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597208856.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:08 Heat of formation + Delta-G solvation = -22.278100 kcal Electronic energy + Delta-G solvation = -19749.916992 eV Core-core repulsion = 16686.870218 eV Total energy + Delta-G solvation = -3063.046774 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.68508 -39.40867 -36.92022 -33.74876 -33.16535 -32.22870 -30.42642 -29.53235 -27.72174 -25.10341 -24.06934 -22.12739 -21.64102 -21.60384 -20.00764 -18.68191 -17.48020 -16.37737 -16.05416 -15.89491 -15.60395 -14.93265 -14.35611 -14.18034 -13.60252 -13.36573 -12.94275 -12.89376 -12.79880 -12.55621 -12.35102 -11.88304 -11.66123 -11.54033 -11.15210 -10.96678 -10.82116 -10.79442 -10.50935 -10.27407 -10.01892 -9.92684 -8.99362 -8.60871 -8.47093 -8.33172 -8.05008 -6.04059 -4.02394 1.62708 2.49771 2.88102 3.36408 3.41426 3.47391 3.66564 3.72421 4.46156 4.49336 4.58333 4.64009 4.87756 4.95185 5.16254 5.30858 5.33305 5.41998 5.65540 5.73338 5.79923 5.82592 5.95112 5.98800 6.06507 6.10061 6.23654 6.38928 6.58564 6.75202 6.87225 6.96281 7.06287 7.46123 7.67221 7.99946 8.10960 8.42754 9.06178 9.23410 9.61461 11.06584 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.042877 B = 0.004184 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.869504 B = 6690.864461 C = 6928.748149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.033 3.967 3 H 0.059 0.941 4 C -0.504 4.504 5 H 0.074 0.926 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.536 3.464 13 O -0.543 6.543 14 N -0.631 5.631 15 C 0.105 3.895 16 C -0.128 4.128 17 C -0.023 4.023 18 H 0.113 0.887 19 C 0.008 3.992 20 C -0.213 4.213 21 C -0.216 4.216 22 C -0.043 4.043 23 O -0.170 6.170 24 C 0.114 3.886 25 H 0.075 0.925 26 H 0.030 0.970 27 H 0.025 0.975 28 H 0.261 0.739 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.201 0.799 36 H 0.065 0.935 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.084 2.750 19.319 19.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.012 3.988 3 H 0.077 0.923 4 C -0.542 4.542 5 H 0.092 0.908 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.328 3.672 13 O -0.418 6.418 14 N -0.369 5.369 15 C -0.018 4.018 16 C -0.166 4.166 17 C -0.042 4.042 18 H 0.131 0.869 19 C -0.042 4.042 20 C -0.232 4.232 21 C -0.235 4.235 22 C -0.111 4.111 23 O -0.065 6.065 24 C -0.009 4.009 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.218 0.782 36 H 0.083 0.917 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.597 2.395 18.724 18.886 hybrid contribution 0.169 -0.488 -0.402 0.655 sum -0.427 1.907 18.322 18.426 Atomic orbital electron populations 1.21787 0.96934 0.98975 1.01187 1.18843 0.93752 0.97269 0.88902 0.92341 1.21113 1.35274 1.08710 0.89108 0.90835 1.24933 0.95289 0.94719 0.99054 1.69962 1.45599 1.13921 1.23866 0.86524 0.78935 0.80034 0.82093 1.20550 1.21378 1.19776 1.21831 0.78348 0.84069 0.82952 1.90540 1.38236 1.27113 1.85910 1.48801 1.53163 1.29885 1.05048 1.22366 0.95007 0.88779 0.95644 1.22979 1.02829 0.95536 0.95245 1.20866 0.94796 0.97820 0.90708 0.86925 1.22127 0.84766 1.01268 0.96070 1.21575 1.00646 1.08054 0.92896 1.21807 0.94562 1.06339 1.00811 1.24040 0.99581 1.05533 0.81951 1.84048 1.24972 1.64413 1.33111 1.21784 0.99862 0.96419 0.82880 0.90639 0.95045 0.95652 0.92959 0.89656 0.91249 0.89516 0.90130 0.83507 0.83594 0.78248 0.91659 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.81 37.16 0.33 -2.63 16 2 C 0.03 0.85 1.85 -92.92 -0.17 0.67 16 3 H 0.06 1.55 7.79 -51.93 -0.40 1.15 16 4 C -0.50 -14.57 8.28 -34.44 -0.29 -14.85 16 5 H 0.07 2.25 6.79 -52.49 -0.36 1.90 16 6 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -25.45 12.18 55.43 0.67 -24.77 16 8 Si 0.90 22.04 29.55 -169.99 -5.02 17.02 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.54 12.82 7.21 -10.98 -0.08 12.74 16 13 O -0.54 -14.89 15.79 5.56 0.09 -14.80 16 14 N -0.63 -11.74 3.32 -170.40 -0.57 -12.31 16 15 C 0.11 1.52 5.14 -2.42 -0.01 1.51 16 16 C -0.13 -1.46 6.54 -24.47 -0.16 -1.62 16 17 C -0.02 -0.27 3.39 -89.94 -0.30 -0.58 16 18 H 0.11 1.07 8.13 -51.93 -0.42 0.64 16 19 C 0.01 0.10 5.80 -35.63 -0.21 -0.10 16 20 C -0.21 -2.27 10.80 -39.70 -0.43 -2.70 16 21 C -0.22 -2.12 10.91 -39.70 -0.43 -2.56 16 22 C -0.04 -0.44 12.09 29.42 0.36 -0.08 16 23 O -0.17 -2.22 10.47 5.70 0.06 -2.17 16 24 C 0.11 1.80 6.46 -3.07 -0.02 1.78 16 25 H 0.07 1.87 6.80 -51.93 -0.35 1.51 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.02 0.47 5.20 -51.93 -0.27 0.20 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.09 1.30 7.30 -51.93 -0.38 0.92 16 30 H 0.07 0.91 7.19 -51.93 -0.37 0.53 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.00 7.98 -51.93 -0.41 0.58 16 33 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 34 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.20 1.29 8.06 -52.49 -0.42 0.86 16 36 H 0.07 1.14 7.72 -51.93 -0.40 0.74 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 306.86 15.07 4.62 4.62 Total: -1.00 -33.25 306.86 -6.70 -39.95 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.05 Total: -0.76 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.51 Total: -6.79 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.11 Total: -37.08 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: 0.15 Total: -16.96 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.25 -6.70 -39.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597208856.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.670 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds