Wall clock time and date at job start Mon Mar 30 2020 06:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.21283 * 120.00011 * 240.00329 * 12 2 1 14 14 N 1.34775 * 120.00072 * 59.99775 * 12 2 1 15 15 C 1.47421 * 125.64785 * 359.69756 * 14 12 2 16 16 C 1.55134 * 104.72356 * 155.81787 * 15 14 12 17 17 C 1.55151 * 101.48424 * 37.29183 * 16 15 14 18 18 H 1.08993 * 110.71962 * 82.70374 * 17 16 15 19 19 C 1.50703 * 110.71855 * 205.97146 * 17 16 15 20 20 C 1.34515 * 125.79094 * 233.24230 * 19 17 16 21 21 C 1.41385 * 106.84060 * 179.88999 * 20 19 17 22 22 C 1.34514 * 106.84020 * 0.36806 * 21 20 19 23 23 O 1.34301 * 108.42025 * 359.77559 * 22 21 20 24 24 C 1.47022 * 125.64640 * 179.97438 * 14 12 2 25 25 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 28 28 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 29 29 H 1.09008 * 110.36830 * 274.74281 * 15 14 12 30 30 H 1.09004 * 110.37184 * 37.06551 * 15 14 12 31 31 H 1.09003 * 111.18916 * 279.18543 * 16 15 14 32 32 H 1.08999 * 110.94031 * 155.29131 * 16 15 14 33 33 H 1.08001 * 126.57960 * 0.02562 * 20 19 17 34 34 H 1.07997 * 126.57977 * 180.12391 * 21 20 19 35 35 H 1.07997 * 125.78617 * 179.79254 * 22 21 20 36 36 H 1.08994 * 109.88742 * 300.43714 * 24 14 12 37 37 H 1.09003 * 109.88080 * 61.45808 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6965 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 6 0.8658 0.9285 -2.7336 16 6 1.2940 1.3918 -4.1508 17 6 1.5388 0.0333 -4.8592 18 1 0.6012 -0.3855 -5.2245 19 6 2.5290 0.1896 -5.9844 20 6 2.3385 -0.1955 -7.2591 21 6 3.5138 0.1419 -7.9689 22 6 4.3554 0.7055 -7.0838 23 8 3.7536 0.7317 -5.8834 24 6 2.1266 -0.8426 -3.7328 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8912 -0.5369 4.4374 29 1 -0.1888 0.6526 -2.7247 30 1 1.0593 1.7143 -2.0034 31 1 2.2090 1.9830 -4.1124 32 1 0.4926 1.9476 -4.6377 33 1 1.4561 -0.6692 -7.6633 34 1 3.7015 -0.0249 -9.0193 35 1 5.3467 1.0745 -7.3016 36 1 3.2146 -0.8501 -3.7983 37 1 1.7434 -1.8599 -3.8132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597208858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:13 Heat of formation + Delta-G solvation = -10.331311 kcal Electronic energy + Delta-G solvation = -19835.181085 eV Core-core repulsion = 16772.652363 eV Total energy + Delta-G solvation = -3062.528722 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.73644 -39.57831 -37.06142 -33.91160 -33.21474 -32.32578 -31.02945 -29.63995 -27.88456 -25.17417 -24.23551 -22.21131 -21.78320 -21.67943 -20.06532 -18.71557 -17.55458 -16.81573 -16.17929 -15.91494 -15.74983 -15.20581 -14.41252 -14.23392 -13.81420 -13.55140 -13.12091 -12.97900 -12.93427 -12.60049 -12.52888 -12.32642 -11.93283 -11.67835 -11.52117 -11.23489 -10.94827 -10.90955 -10.56196 -10.27249 -10.06461 -9.59985 -9.07562 -8.75202 -8.58043 -8.54603 -8.18296 -6.03417 -4.03646 1.57445 2.45189 2.82241 3.24022 3.31141 3.37226 3.50435 3.56149 4.38905 4.39393 4.47419 4.52900 4.82687 4.89658 5.08788 5.21862 5.26207 5.29818 5.57617 5.62018 5.65573 5.73591 5.76627 5.90540 5.94148 5.98197 6.08990 6.15975 6.32176 6.33969 6.42600 6.64649 6.84773 7.01059 7.18353 7.56363 8.07776 8.55733 9.07074 9.16517 9.55354 11.09640 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040881 B = 0.004484 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.756820 B = 6242.246239 C = 6490.767458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.001 3.999 3 H 0.051 0.949 4 C -0.506 4.506 5 H 0.093 0.907 6 C 0.070 3.930 7 N -0.896 5.896 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.267 1.267 12 C 0.544 3.456 13 O -0.528 6.528 14 N -0.633 5.633 15 C 0.102 3.898 16 C -0.128 4.128 17 C -0.022 4.022 18 H 0.114 0.886 19 C 0.006 3.994 20 C -0.211 4.211 21 C -0.216 4.216 22 C -0.042 4.042 23 O -0.170 6.170 24 C 0.115 3.885 25 H 0.040 0.960 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.264 0.736 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.201 0.799 36 H 0.067 0.933 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.008 6.776 -22.195 23.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 H 0.069 0.931 4 C -0.544 4.544 5 H 0.111 0.889 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.335 3.665 13 O -0.401 6.401 14 N -0.371 5.371 15 C -0.021 4.021 16 C -0.166 4.166 17 C -0.041 4.041 18 H 0.132 0.868 19 C -0.044 4.044 20 C -0.230 4.230 21 C -0.235 4.235 22 C -0.110 4.110 23 O -0.066 6.066 24 C -0.009 4.009 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.218 0.782 36 H 0.085 0.915 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.459 6.284 -21.534 22.567 hybrid contribution -0.615 0.748 -0.171 0.983 sum -3.074 7.032 -21.705 23.022 Atomic orbital electron populations 1.22247 0.97346 1.01640 0.99569 1.19264 0.93280 0.97395 0.92082 0.93097 1.20953 1.32002 1.14209 0.87236 0.88905 1.24976 0.95847 0.96577 0.95716 1.69887 1.45554 1.40135 0.97855 0.86904 0.80707 0.83819 0.77044 1.20485 1.22311 1.19270 1.21112 0.78754 0.84106 0.82488 1.90596 1.37455 1.26445 1.85638 1.48757 1.53000 1.30165 1.05142 1.22417 0.95007 0.88783 0.95927 1.22973 1.02890 0.95696 0.95039 1.20846 0.94913 0.97678 0.90675 0.86826 1.22084 0.85370 1.00796 0.96174 1.21583 1.00811 1.07506 0.93089 1.21813 0.94962 1.05739 1.00986 1.24045 0.99628 1.05201 0.82128 1.84039 1.25825 1.63316 1.33401 1.21800 1.00026 0.96511 0.82516 0.94154 0.92450 0.93317 0.92569 0.91049 0.89931 0.89987 0.89498 0.83482 0.83560 0.78209 0.91482 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.48 37.16 0.31 -2.81 16 2 C 0.00 0.03 1.58 -92.92 -0.15 -0.12 16 3 H 0.05 1.19 6.92 -51.93 -0.36 0.83 16 4 C -0.51 -14.91 8.96 -34.44 -0.31 -15.22 16 5 H 0.09 3.12 7.00 -52.49 -0.37 2.75 16 6 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 7 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 8 Si 0.88 21.43 24.37 -169.99 -4.14 17.29 16 9 H -0.28 -6.49 6.86 56.52 0.39 -6.10 16 10 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 12 C 0.54 12.52 7.21 -10.98 -0.08 12.44 16 13 O -0.53 -14.30 15.79 5.56 0.09 -14.21 16 14 N -0.63 -11.08 3.32 -170.37 -0.57 -11.64 16 15 C 0.10 1.33 5.14 -2.41 -0.01 1.32 16 16 C -0.13 -1.33 6.53 -24.46 -0.16 -1.49 16 17 C -0.02 -0.24 3.39 -89.94 -0.31 -0.55 16 18 H 0.11 0.98 8.13 -51.93 -0.42 0.56 16 19 C 0.01 0.07 5.80 -35.62 -0.21 -0.13 16 20 C -0.21 -2.14 10.80 -39.70 -0.43 -2.57 16 21 C -0.22 -2.02 10.91 -39.70 -0.43 -2.46 16 22 C -0.04 -0.41 12.09 29.42 0.36 -0.05 16 23 O -0.17 -2.12 10.47 5.71 0.06 -2.06 16 24 C 0.11 1.72 6.45 -3.06 -0.02 1.70 16 25 H 0.04 0.66 4.98 -51.93 -0.26 0.40 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.05 1.05 3.25 -51.93 -0.17 0.88 16 28 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.07 0.82 7.08 -51.92 -0.37 0.45 16 30 H 0.08 1.11 7.34 -51.93 -0.38 0.72 16 31 H 0.08 0.93 7.93 -51.93 -0.41 0.52 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.20 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.07 1.11 7.77 -51.93 -0.40 0.71 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 298.50 15.07 4.50 4.50 Total: -1.00 -35.23 298.50 -5.67 -40.90 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -4.86 Total: 0.41 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -1.53 Total: -7.98 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.21 Total: -38.85 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.15 Total: -16.27 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.14 Total: 17.29 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.23 -5.67 -40.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597208858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.569 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds