Wall clock time and date at job start Mon Mar 30 2020 06:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31523 * 119.99908 * 179.72112 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 359.71709 * 6 4 2 9 9 H 1.48500 * 109.47210 * 90.00069 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00300 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00390 * 8 6 4 12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3 13 13 O 1.21283 * 120.00011 * 240.00329 * 12 2 1 14 14 N 1.34775 * 120.00072 * 59.99775 * 12 2 1 15 15 C 1.47421 * 125.64785 * 359.69756 * 14 12 2 16 16 C 1.55134 * 104.72356 * 155.81787 * 15 14 12 17 17 C 1.55151 * 101.48424 * 37.29183 * 16 15 14 18 18 H 1.08993 * 110.71962 * 82.70374 * 17 16 15 19 19 C 1.50703 * 110.71855 * 205.97146 * 17 16 15 20 20 C 1.34515 * 125.79094 * 233.24230 * 19 17 16 21 21 C 1.41385 * 106.84060 * 179.88999 * 20 19 17 22 22 C 1.34514 * 106.84020 * 0.36806 * 21 20 19 23 23 O 1.34301 * 108.42025 * 359.77559 * 22 21 20 24 24 C 1.47022 * 125.64640 * 179.97438 * 14 12 2 25 25 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 26 26 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 28 28 H 0.96995 * 120.00181 * 179.97438 * 7 6 4 29 29 H 1.09008 * 110.36830 * 274.74281 * 15 14 12 30 30 H 1.09004 * 110.37184 * 37.06551 * 15 14 12 31 31 H 1.09003 * 111.18916 * 279.18543 * 16 15 14 32 32 H 1.08999 * 110.94031 * 155.29131 * 16 15 14 33 33 H 1.08001 * 126.57960 * 0.02562 * 20 19 17 34 34 H 1.07997 * 126.57977 * 180.12391 * 21 20 19 35 35 H 1.07997 * 125.78617 * 179.79254 * 22 21 20 36 36 H 1.08994 * 109.88742 * 300.43714 * 24 14 12 37 37 H 1.09003 * 109.88080 * 61.45808 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 2.1285 -0.8661 3.5564 8 14 0.6207 1.2760 2.6542 9 1 -0.8074 0.8707 2.6929 10 1 0.9674 1.9881 3.9104 11 1 0.8484 2.1766 1.4956 12 6 2.0323 -0.7103 -1.2306 13 8 2.7295 -1.6965 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 6 0.8658 0.9285 -2.7336 16 6 1.2940 1.3918 -4.1508 17 6 1.5388 0.0333 -4.8592 18 1 0.6012 -0.3855 -5.2245 19 6 2.5290 0.1896 -5.9844 20 6 2.3385 -0.1955 -7.2591 21 6 3.5138 0.1419 -7.9689 22 6 4.3554 0.7055 -7.0838 23 8 3.7536 0.7317 -5.8834 24 6 2.1266 -0.8426 -3.7328 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8912 -0.5369 4.4374 29 1 -0.1888 0.6526 -2.7247 30 1 1.0593 1.7143 -2.0034 31 1 2.2090 1.9830 -4.1124 32 1 0.4926 1.9476 -4.6377 33 1 1.4561 -0.6692 -7.6633 34 1 3.7015 -0.0249 -9.0193 35 1 5.3467 1.0745 -7.3016 36 1 3.2146 -0.8501 -3.7983 37 1 1.7434 -1.8599 -3.8132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597208858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:12 Heat of formation + Delta-G solvation = -35.870779 kcal Electronic energy + Delta-G solvation = -19836.288560 eV Core-core repulsion = 16772.652363 eV Total energy + Delta-G solvation = -3063.636196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.50796 -41.07089 -38.50953 -35.88887 -34.15838 -33.70755 -32.75502 -30.65092 -28.91969 -27.13547 -25.72912 -23.35629 -23.05518 -22.50430 -20.89778 -20.25186 -18.90197 -18.35748 -17.51792 -17.22389 -16.99468 -16.76307 -16.00821 -15.44863 -15.26375 -14.70026 -14.68103 -14.33432 -13.99577 -13.72696 -13.66888 -13.39858 -13.33195 -13.25175 -12.82965 -12.59184 -12.51974 -12.21310 -12.08268 -11.82337 -11.43584 -11.21179 -10.80787 -10.78497 -10.52200 -9.64841 -9.33659 -8.28061 -6.36856 0.79910 1.32781 1.40413 1.51834 1.72948 1.78155 2.00436 2.21898 2.34496 3.05119 3.50652 3.55262 3.60995 4.04182 4.14006 4.19343 4.24794 4.29929 4.39326 4.43217 4.60392 4.65916 4.70599 4.77006 4.85813 4.91567 4.98567 5.01349 5.06222 5.21746 5.24278 5.41005 5.45011 5.53561 5.65965 6.24745 6.26297 6.53911 6.79819 7.23613 7.38722 8.89994 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.040881 B = 0.004484 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.756820 B = 6242.246239 C = 6490.767458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.000 4.000 3 H 0.066 0.934 4 C -0.526 4.526 5 H 0.025 0.975 6 C 0.006 3.994 7 N -0.954 5.954 8 Si 0.962 3.038 9 H -0.256 1.256 10 H -0.299 1.299 11 H -0.229 1.229 12 C 0.537 3.463 13 O -0.591 6.591 14 N -0.625 5.625 15 C 0.087 3.913 16 C -0.115 4.115 17 C -0.007 4.007 18 H 0.146 0.854 19 C -0.021 4.021 20 C -0.207 4.207 21 C -0.225 4.225 22 C -0.050 4.050 23 O -0.199 6.199 24 C 0.109 3.891 25 H 0.092 0.908 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.268 0.732 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.128 0.872 33 H 0.169 0.831 34 H 0.170 0.830 35 H 0.228 0.772 36 H 0.040 0.960 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.843 9.817 -25.128 27.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 H 0.084 0.916 4 C -0.564 4.564 5 H 0.043 0.957 6 C -0.191 4.191 7 N -0.593 5.593 8 Si 0.786 3.214 9 H -0.181 1.181 10 H -0.226 1.226 11 H -0.152 1.152 12 C 0.328 3.672 13 O -0.470 6.470 14 N -0.360 5.360 15 C -0.034 4.034 16 C -0.153 4.153 17 C -0.025 4.025 18 H 0.164 0.836 19 C -0.071 4.071 20 C -0.226 4.226 21 C -0.244 4.244 22 C -0.117 4.117 23 O -0.096 6.096 24 C -0.014 4.014 25 H 0.110 0.890 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.186 0.814 34 H 0.187 0.813 35 H 0.245 0.755 36 H 0.058 0.942 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.325 9.361 -24.549 26.807 hybrid contribution 0.411 -0.298 0.640 0.817 sum -4.915 9.063 -23.909 26.037 Atomic orbital electron populations 1.22141 0.94097 1.01762 1.02008 1.19176 0.95756 0.97028 0.90142 0.91639 1.21104 1.31803 1.12989 0.90551 0.95666 1.26085 0.97462 1.00909 0.94596 1.70087 1.47656 1.42830 0.98770 0.85668 0.78849 0.78731 0.78107 1.18144 1.22635 1.15225 1.20970 0.78468 0.83528 0.84223 1.90566 1.40381 1.29204 1.86854 1.48629 1.52133 1.31016 1.04223 1.22880 0.95762 0.86983 0.97797 1.22960 1.03703 0.95394 0.93241 1.20851 0.95678 0.97044 0.88968 0.83592 1.22245 0.85540 1.02422 0.96867 1.21949 1.01654 1.06310 0.92666 1.22193 0.94643 1.05382 1.02135 1.24748 1.00748 1.04821 0.81407 1.84022 1.26622 1.64033 1.34882 1.21953 0.98812 0.97594 0.82992 0.88950 0.93691 0.93363 0.92309 0.87980 0.89622 0.91276 0.85409 0.81377 0.81294 0.75525 0.94195 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.51 8.48 71.98 0.61 -4.90 16 2 C 0.00 0.02 1.58 -12.29 -0.02 0.00 16 3 H 0.07 2.92 6.92 -2.38 -0.02 2.91 16 4 C -0.53 -32.58 8.96 25.60 0.23 -32.35 16 5 H 0.02 1.85 7.00 -2.91 -0.02 1.83 16 6 C 0.01 0.34 5.45 84.65 0.46 0.81 16 7 N -0.95 -62.32 13.96 21.45 0.30 -62.02 16 8 Si 0.96 43.29 24.37 68.60 1.67 44.97 16 9 H -0.26 -10.61 6.86 99.48 0.68 -9.93 16 10 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 11 H -0.23 -8.86 6.54 99.48 0.65 -8.21 16 12 C 0.54 25.32 7.21 87.66 0.63 25.96 16 13 O -0.59 -34.36 15.79 -3.04 -0.05 -34.41 16 14 N -0.63 -21.25 3.32 -811.33 -2.69 -23.94 16 15 C 0.09 1.92 5.14 86.93 0.45 2.37 16 16 C -0.12 -1.92 6.53 32.06 0.21 -1.71 16 17 C -0.01 -0.13 3.39 -10.35 -0.04 -0.17 16 18 H 0.15 1.82 8.13 -2.39 -0.02 1.80 16 19 C -0.02 -0.43 5.80 24.83 0.14 -0.29 16 20 C -0.21 -3.60 10.80 22.19 0.24 -3.36 16 21 C -0.22 -3.63 10.91 22.19 0.24 -3.39 16 22 C -0.05 -0.88 12.09 66.97 0.81 -0.07 16 23 O -0.20 -4.74 10.47 -2.48 -0.03 -4.76 16 24 C 0.11 3.23 6.45 86.73 0.56 3.79 16 25 H 0.09 2.56 4.98 -2.38 -0.01 2.55 16 26 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 1.87 3.25 -2.38 -0.01 1.86 16 28 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 29 H 0.10 1.72 7.08 -2.38 -0.02 1.70 16 30 H 0.09 1.90 7.34 -2.38 -0.02 1.88 16 31 H 0.07 1.37 7.93 -2.39 -0.02 1.35 16 32 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 34 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.23 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.04 1.38 7.77 -2.39 -0.02 1.37 16 37 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -85.57 298.50 4.72 -80.84 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.99 Total: 12.64 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 4.53 Total: -13.31 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -2.40 Total: -85.97 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.07 Total: -39.17 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.67 Total: 44.97 kcal Total: -85.57 4.72 -80.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597208858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.972 kcal (2) G-P(sol) polarization free energy of solvation -85.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds