Wall clock time and date at job start Mon Mar 30 2020 06:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47312 * 2 1 4 4 C 1.50706 * 109.46925 * 239.99957 * 2 1 3 5 5 H 1.07998 * 119.99629 * 240.00072 * 4 2 1 6 6 C 1.37875 * 119.99955 * 60.00643 * 4 2 1 7 7 N 1.31515 * 119.99932 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47233 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47364 * 119.99503 * 8 6 4 11 11 H 1.48500 * 109.46997 * 239.99827 * 8 6 4 12 12 C 1.50697 * 109.46783 * 120.00217 * 2 1 3 13 13 O 1.21277 * 119.99998 * 120.00245 * 12 2 1 14 14 N 1.34777 * 120.00075 * 299.99428 * 12 2 1 15 15 C 1.46500 * 120.00084 * 179.97438 * 14 12 2 16 16 H 1.09005 * 109.46740 * 35.00744 * 15 14 12 17 17 C 1.52994 * 109.47176 * 275.00556 * 15 14 12 18 18 C 1.50696 * 109.47123 * 155.00213 * 15 14 12 19 19 C 1.38292 * 119.96980 * 39.72747 * 18 15 14 20 20 C 1.38248 * 120.11348 * 179.72128 * 19 18 15 21 21 C 1.38173 * 120.05022 * 0.55605 * 20 19 18 22 22 C 1.38705 * 119.94364 * 359.71866 * 21 20 19 23 23 O 1.35902 * 120.05459 * 179.97438 * 22 21 20 24 24 C 1.38119 * 119.97733 * 220.00147 * 18 15 14 25 25 H 1.08992 * 109.47060 * 300.00030 * 1 2 3 26 26 H 1.09004 * 109.46930 * 59.99944 * 1 2 3 27 27 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 28 28 H 0.97003 * 119.99476 * 180.02562 * 7 6 4 29 29 H 0.96996 * 119.99636 * 0.02562 * 14 12 2 30 30 H 1.08993 * 109.47387 * 60.00354 * 17 15 14 31 31 H 1.09004 * 109.46955 * 180.02562 * 17 15 14 32 32 H 1.08997 * 109.47225 * 299.99468 * 17 15 14 33 33 H 1.08000 * 119.94334 * 359.97438 * 19 18 15 34 34 H 1.07994 * 119.97350 * 180.25530 * 20 19 18 35 35 H 1.07999 * 120.02330 * 179.70209 * 21 20 19 36 36 H 0.96694 * 114.00325 * 270.03230 * 23 22 21 37 37 H 1.07999 * 120.02627 * 0.02687 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9429 0.8298 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1483 -2.2857 -3.6038 10 1 1.1678 -1.5866 -4.8166 11 1 3.1474 -0.1858 -4.8160 12 6 2.0323 -0.7105 1.2304 13 8 2.7295 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4545 15 6 2.1945 -0.9410 3.6507 16 1 3.1937 -1.3335 3.4614 17 6 1.2499 -2.0944 3.9942 18 6 2.2455 0.0272 4.8044 19 6 1.2352 0.9566 4.9714 20 6 1.2760 1.8424 6.0321 21 6 2.3328 1.8085 6.9216 22 6 3.3502 0.8810 6.7529 23 8 4.3910 0.8460 7.6261 24 6 3.3040 -0.0107 5.6909 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7084 1.1609 -3.4844 29 1 1.1489 0.5385 2.5435 30 1 1.2131 -2.7947 3.1598 31 1 1.6127 -2.6083 4.8845 32 1 0.2509 -1.7019 4.1835 33 1 0.4108 0.9879 4.2744 34 1 0.4837 2.5646 6.1627 35 1 2.3667 2.5039 7.7472 36 1 5.1337 1.4123 7.3758 37 1 4.0952 -0.7336 5.5573 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597408820.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:58 Heat of formation + Delta-G solvation = -88.976011 kcal Electronic energy + Delta-G solvation = -19429.012601 eV Core-core repulsion = 16363.073589 eV Total energy + Delta-G solvation = -3065.939012 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.21341 -40.26891 -38.08258 -36.09132 -35.71726 -33.18524 -31.91075 -30.72293 -29.95693 -27.19546 -25.41556 -24.17392 -23.61566 -21.88944 -20.97223 -19.20932 -18.30051 -17.90456 -17.28817 -17.05890 -16.36772 -16.19006 -15.95121 -15.80653 -15.10877 -14.75996 -14.50581 -14.36506 -14.09130 -13.50438 -13.23941 -13.12764 -12.96615 -12.84870 -12.69143 -12.59276 -12.46202 -12.27049 -12.15590 -12.01510 -11.38955 -11.01956 -10.60161 -10.32282 -10.07035 -9.81272 -9.56493 -8.14546 -6.24561 0.24933 0.33257 1.39604 1.41764 1.55134 1.94147 2.31494 2.49371 2.72980 3.15087 3.25675 3.61338 3.92249 4.19374 4.22058 4.25847 4.31648 4.45005 4.58141 4.71532 4.76225 4.86195 4.93326 4.96469 5.00364 5.05370 5.20038 5.41705 5.44262 5.46717 5.51341 5.68814 5.76912 5.87303 5.95804 6.22684 6.73995 6.84368 6.87019 7.40920 7.55152 8.91407 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.034642 B = 0.004104 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.083190 B = 6821.593723 C = 7001.069176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.023 3.977 3 H 0.041 0.959 4 C -0.528 4.528 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.954 3.046 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.274 1.274 12 C 0.524 3.476 13 O -0.585 6.585 14 N -0.719 5.719 15 C 0.180 3.820 16 H 0.070 0.930 17 C -0.150 4.150 18 C -0.075 4.075 19 C -0.130 4.130 20 C -0.094 4.094 21 C -0.149 4.149 22 C 0.102 3.898 23 O -0.510 6.510 24 C -0.150 4.150 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.023 0.977 28 H 0.265 0.735 29 H 0.408 0.592 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.136 0.864 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.410 0.590 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.324 4.703 19.204 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.002 3.998 3 H 0.058 0.942 4 C -0.566 4.566 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.780 3.220 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.200 1.200 12 C 0.313 3.687 13 O -0.465 6.465 14 N -0.373 5.373 15 C 0.076 3.924 16 H 0.088 0.912 17 C -0.208 4.208 18 C -0.076 4.076 19 C -0.148 4.148 20 C -0.112 4.112 21 C -0.167 4.167 22 C 0.057 3.943 23 O -0.323 6.323 24 C -0.169 4.169 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.245 0.755 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.154 0.846 34 H 0.174 0.826 35 H 0.166 0.834 36 H 0.269 0.731 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.246 3.721 19.295 19.652 hybrid contribution 0.589 0.057 -1.274 1.405 sum 0.344 3.778 18.021 18.416 Atomic orbital electron populations 1.21549 0.94889 0.99463 1.01761 1.18824 0.95481 0.95890 0.89598 0.94150 1.21319 1.31484 1.12660 0.91146 0.93410 1.25580 0.95221 0.95752 1.01369 1.69955 1.37247 1.23585 1.24211 0.85558 0.78353 0.78582 0.79477 1.20534 1.19905 1.19992 1.21541 0.78021 0.83670 0.85477 1.90504 1.39895 1.28619 1.87459 1.46166 1.54353 1.32425 1.04403 1.19716 0.98671 0.91590 0.82463 0.91209 1.22084 0.99916 0.97258 1.01528 1.19704 0.95436 0.96894 0.95571 1.21202 0.98648 0.95668 0.99256 1.21340 0.98320 0.98400 0.93150 1.21706 0.94960 0.99054 1.00995 1.18508 0.90573 0.95592 0.89608 1.84759 1.28785 1.70888 1.47884 1.21355 0.99343 1.01222 0.94986 0.92856 0.91095 0.95816 0.92623 0.75478 0.94025 0.90262 0.90913 0.84605 0.82592 0.83384 0.73122 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.87 71.98 0.64 -4.70 16 2 C 0.02 1.17 2.64 -12.28 -0.03 1.14 16 3 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 4 C -0.53 -30.71 8.37 25.60 0.21 -30.50 16 5 H 0.05 2.99 6.75 -2.91 -0.02 2.97 16 6 C 0.02 1.11 5.30 84.65 0.45 1.56 16 7 N -0.91 -50.98 11.32 21.45 0.24 -50.74 16 8 Si 0.95 45.07 29.54 68.60 2.03 47.09 16 9 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.52 24.06 7.11 87.66 0.62 24.69 16 13 O -0.59 -31.34 15.12 -3.02 -0.05 -31.38 16 14 N -0.72 -24.50 4.92 -446.11 -2.19 -26.70 16 15 C 0.18 5.38 2.78 44.24 0.12 5.50 16 16 H 0.07 2.41 7.44 -2.38 -0.02 2.39 16 17 C -0.15 -4.09 9.46 71.98 0.68 -3.41 16 18 C -0.08 -1.82 4.95 -19.88 -0.10 -1.92 16 19 C -0.13 -2.61 9.06 22.28 0.20 -2.41 16 20 C -0.09 -1.54 10.04 22.26 0.22 -1.32 16 21 C -0.15 -2.52 9.99 22.37 0.22 -2.29 16 22 C 0.10 2.04 6.70 22.50 0.15 2.19 16 23 O -0.51 -8.91 13.50 -92.45 -1.25 -10.16 16 24 C -0.15 -3.46 9.61 22.36 0.21 -3.24 16 25 H 0.05 1.90 7.56 -2.39 -0.02 1.88 16 26 H 0.07 3.54 6.07 -2.38 -0.01 3.52 16 27 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 29 H 0.41 11.67 6.27 -92.71 -0.58 11.09 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.14 2.41 6.89 -2.91 -0.02 2.39 16 34 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.41 3.33 9.06 -74.06 -0.67 2.66 16 37 H 0.13 2.87 8.04 -2.91 -0.02 2.85 16 Total: -1.00 -70.68 313.82 2.23 -68.44 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -0.16 Total: 18.15 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 3.61 Total: -14.71 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -1.95 Total: -77.43 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -1.29 Total: -41.54 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -70.68 2.23 -68.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597408820.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.531 kcal (2) G-P(sol) polarization free energy of solvation -70.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds