Wall clock time and date at job start Mon Mar 30 2020 06:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47430 * 2 1 4 4 C 1.50702 * 109.47241 * 120.00219 * 2 1 3 5 5 H 1.08000 * 119.99775 * 119.99633 * 4 2 1 6 6 C 1.37874 * 119.99682 * 300.00047 * 4 2 1 7 7 N 1.31516 * 120.00118 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99877 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46932 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47263 * 119.99589 * 8 6 4 11 11 H 1.48505 * 109.47192 * 239.99973 * 8 6 4 12 12 C 1.50702 * 109.46866 * 240.00090 * 2 1 3 13 13 O 1.21287 * 119.99949 * 239.99823 * 12 2 1 14 14 N 1.34777 * 120.00050 * 60.00339 * 12 2 1 15 15 C 1.46500 * 120.00059 * 180.02562 * 14 12 2 16 16 H 1.09006 * 109.47004 * 324.99673 * 15 14 12 17 17 C 1.52992 * 109.47357 * 84.99580 * 15 14 12 18 18 C 1.50703 * 109.47145 * 205.00122 * 15 14 12 19 19 C 1.38294 * 119.97003 * 320.01410 * 18 15 14 20 20 C 1.38232 * 120.11124 * 179.97438 * 19 18 15 21 21 C 1.38173 * 120.05823 * 359.97438 * 20 19 18 22 22 C 1.38705 * 119.94203 * 359.76822 * 21 20 19 23 23 O 1.35904 * 120.05924 * 180.25551 * 22 21 20 24 24 C 1.38122 * 119.97497 * 140.00082 * 18 15 14 25 25 H 1.08995 * 109.47272 * 300.00059 * 1 2 3 26 26 H 1.09000 * 109.46983 * 60.00043 * 1 2 3 27 27 H 1.08999 * 109.47430 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99606 * 179.97438 * 7 6 4 29 29 H 0.97003 * 119.99923 * 359.97438 * 14 12 2 30 30 H 1.09008 * 109.47101 * 180.02562 * 17 15 14 31 31 H 1.08998 * 109.47343 * 299.99949 * 17 15 14 32 32 H 1.08996 * 109.47175 * 60.00077 * 17 15 14 33 33 H 1.08003 * 119.94130 * 0.02562 * 19 18 15 34 34 H 1.08008 * 119.97134 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.02588 * 180.02562 * 21 20 19 36 36 H 0.96692 * 113.99886 * 270.25458 * 23 22 21 37 37 H 1.08002 * 120.02504 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6033 8 14 2.3213 -1.1204 4.0079 9 1 3.1455 -2.2878 3.6036 10 1 3.1466 -0.1875 4.8164 11 1 1.1660 -1.5868 4.8160 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7067 -0.2499 -2.4546 15 6 2.1945 -0.9408 -3.6508 16 1 3.1936 -1.3334 -3.4616 17 6 1.2500 -2.0943 -3.9944 18 6 2.2455 0.0274 -4.8045 19 6 1.2325 0.9534 -4.9746 20 6 1.2766 1.8433 -6.0315 21 6 2.3337 1.8099 -6.9206 22 6 3.3537 0.8857 -6.7491 23 8 4.3972 0.8543 -7.6192 24 6 3.3040 -0.0105 -5.6910 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7089 1.1613 3.4844 29 1 1.1488 0.5386 -2.5436 30 1 1.6132 -2.6086 -4.8842 31 1 1.2132 -2.7946 -3.1599 32 1 0.2509 -1.7018 -4.1836 33 1 0.4060 0.9819 -4.2799 34 1 0.4844 2.5658 -6.1619 35 1 2.3679 2.5057 -7.7459 36 1 4.2593 0.2708 -8.3778 37 1 4.0948 -0.7340 -5.5578 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597408821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:01 Heat of formation + Delta-G solvation = -66.264173 kcal Electronic energy + Delta-G solvation = -19425.377604 eV Core-core repulsion = 16360.423451 eV Total energy + Delta-G solvation = -3064.954153 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.14644 -38.82198 -37.10538 -34.80514 -33.70244 -31.64153 -30.41989 -29.65900 -28.87134 -25.12432 -24.13122 -22.91064 -22.46121 -20.75148 -19.31857 -18.23363 -16.75329 -16.31237 -16.04345 -15.78759 -15.25530 -14.79622 -14.42052 -14.22308 -13.92742 -13.52476 -12.99764 -12.97241 -12.53605 -12.29124 -12.10691 -12.05817 -11.48661 -11.46583 -11.18354 -11.00790 -10.68953 -10.66552 -10.51147 -10.23642 -9.94058 -9.04006 -8.94510 -8.79640 -8.56155 -8.46407 -8.29841 -6.01369 -4.04188 1.08256 1.16976 3.33737 3.41177 3.44763 3.49760 3.74908 3.83161 4.11733 4.49723 4.58932 4.76007 4.97214 5.14418 5.31751 5.32571 5.38711 5.50054 5.65888 5.76602 5.84493 5.99362 6.21577 6.22740 6.27178 6.36142 6.48320 6.62747 6.65447 6.84173 6.94089 7.11130 7.45329 7.49613 7.77301 8.01013 8.16492 8.46436 9.05377 9.25771 9.61438 11.06353 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.034897 B = 0.004100 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.160660 B = 6827.662158 C = 7015.162770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.075 0.925 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.521 3.479 13 O -0.545 6.545 14 N -0.741 5.741 15 C 0.179 3.821 16 H 0.092 0.908 17 C -0.155 4.155 18 C -0.064 4.064 19 C -0.121 4.121 20 C -0.100 4.100 21 C -0.150 4.150 22 C 0.104 3.896 23 O -0.500 6.500 24 C -0.136 4.136 25 H 0.093 0.907 26 H 0.011 0.989 27 H 0.031 0.969 28 H 0.260 0.740 29 H 0.395 0.605 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.388 0.612 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.200 1.287 -19.619 19.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.070 0.930 4 C -0.537 4.537 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.311 3.689 13 O -0.421 6.421 14 N -0.396 5.396 15 C 0.073 3.927 16 H 0.110 0.890 17 C -0.214 4.214 18 C -0.065 4.065 19 C -0.139 4.139 20 C -0.118 4.118 21 C -0.169 4.169 22 C 0.060 3.940 23 O -0.310 6.310 24 C -0.154 4.154 25 H 0.111 0.889 26 H 0.030 0.970 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.230 0.770 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.244 0.756 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.497 1.057 -18.973 19.009 hybrid contribution -0.182 -0.252 0.360 0.476 sum -0.678 0.805 -18.613 18.643 Atomic orbital electron populations 1.21733 0.96541 0.99785 1.00869 1.18887 0.94153 0.96875 0.89376 0.93014 1.21191 1.30809 1.12751 0.88975 0.90715 1.24952 0.95154 0.95078 0.99118 1.69883 1.37258 1.23142 1.23386 0.86409 0.78607 0.79798 0.82509 1.19561 1.21067 1.21078 1.21988 0.78249 0.84247 0.84386 1.90527 1.37949 1.26894 1.86716 1.46459 1.55455 1.32539 1.05153 1.19677 0.99660 0.90624 0.82696 0.88983 1.22147 0.99219 0.98145 1.01842 1.19969 0.94048 0.96468 0.96002 1.21043 0.98934 0.95652 0.98288 1.21019 0.97901 0.98551 0.94312 1.21403 0.93956 1.00344 1.01188 1.18424 0.87686 0.95847 0.92041 1.84843 1.39155 1.69501 1.37454 1.21293 0.98555 0.99617 0.95976 0.88858 0.97012 0.94992 0.93056 0.77019 0.92235 0.91301 0.92471 0.85503 0.85427 0.85588 0.75620 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.87 37.16 0.33 -2.67 16 2 C 0.03 0.70 2.64 -92.92 -0.25 0.46 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.23 8.37 -34.44 -0.29 -14.52 16 5 H 0.07 2.26 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.28 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 C 0.52 11.87 7.11 -10.98 -0.08 11.79 16 13 O -0.55 -14.14 15.12 5.55 0.08 -14.05 16 14 N -0.74 -12.92 4.92 -54.93 -0.27 -13.19 16 15 C 0.18 2.69 2.78 -69.08 -0.19 2.49 16 16 H 0.09 1.55 7.44 -51.93 -0.39 1.16 16 17 C -0.16 -2.11 9.46 37.15 0.35 -1.76 16 18 C -0.06 -0.82 4.95 -104.64 -0.52 -1.33 16 19 C -0.12 -1.37 9.05 -39.56 -0.36 -1.73 16 20 C -0.10 -0.99 10.04 -39.61 -0.40 -1.39 16 21 C -0.15 -1.51 9.99 -39.43 -0.39 -1.91 16 22 C 0.10 1.16 6.70 -39.22 -0.26 0.89 16 23 O -0.50 -4.89 13.50 -19.44 -0.26 -5.15 16 24 C -0.14 -1.63 9.61 -39.43 -0.38 -2.01 16 25 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 26 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.39 6.06 6.28 -40.82 -0.26 5.80 16 30 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.13 1.32 6.91 -52.48 -0.36 0.96 16 34 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.39 1.80 9.06 45.56 0.41 2.21 16 37 H 0.13 1.47 8.04 -52.49 -0.42 1.04 16 LS Contribution 313.85 15.07 4.73 4.73 Total: -1.00 -32.77 313.85 -6.81 -39.58 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -4.17 Total: 6.01 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -2.53 Total: -10.17 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.36 Total: -37.85 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.18 Total: -19.21 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.77 -6.81 -39.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597408821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.688 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds