Wall clock time and date at job start Mon Mar 30 2020 06:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47430 * 2 1 4 4 C 1.50702 * 109.47241 * 120.00219 * 2 1 3 5 5 H 1.08000 * 119.99775 * 119.99633 * 4 2 1 6 6 C 1.37874 * 119.99682 * 300.00047 * 4 2 1 7 7 N 1.31516 * 120.00118 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99877 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46932 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47263 * 119.99589 * 8 6 4 11 11 H 1.48505 * 109.47192 * 239.99973 * 8 6 4 12 12 C 1.50702 * 109.46866 * 240.00090 * 2 1 3 13 13 O 1.21287 * 119.99949 * 239.99823 * 12 2 1 14 14 N 1.34777 * 120.00050 * 60.00339 * 12 2 1 15 15 C 1.46500 * 120.00059 * 180.02562 * 14 12 2 16 16 H 1.09006 * 109.47004 * 324.99673 * 15 14 12 17 17 C 1.52992 * 109.47357 * 84.99580 * 15 14 12 18 18 C 1.50703 * 109.47145 * 205.00122 * 15 14 12 19 19 C 1.38294 * 119.97003 * 320.01410 * 18 15 14 20 20 C 1.38232 * 120.11124 * 179.97438 * 19 18 15 21 21 C 1.38173 * 120.05823 * 359.97438 * 20 19 18 22 22 C 1.38705 * 119.94203 * 359.76822 * 21 20 19 23 23 O 1.35904 * 120.05924 * 180.25551 * 22 21 20 24 24 C 1.38122 * 119.97497 * 140.00082 * 18 15 14 25 25 H 1.08995 * 109.47272 * 300.00059 * 1 2 3 26 26 H 1.09000 * 109.46983 * 60.00043 * 1 2 3 27 27 H 1.08999 * 109.47430 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99606 * 179.97438 * 7 6 4 29 29 H 0.97003 * 119.99923 * 359.97438 * 14 12 2 30 30 H 1.09008 * 109.47101 * 180.02562 * 17 15 14 31 31 H 1.08998 * 109.47343 * 299.99949 * 17 15 14 32 32 H 1.08996 * 109.47175 * 60.00077 * 17 15 14 33 33 H 1.08003 * 119.94130 * 0.02562 * 19 18 15 34 34 H 1.08008 * 119.97134 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.02588 * 180.02562 * 21 20 19 36 36 H 0.96692 * 113.99886 * 270.25458 * 23 22 21 37 37 H 1.08002 * 120.02504 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6033 8 14 2.3213 -1.1204 4.0079 9 1 3.1455 -2.2878 3.6036 10 1 3.1466 -0.1875 4.8164 11 1 1.1660 -1.5868 4.8160 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7067 -0.2499 -2.4546 15 6 2.1945 -0.9408 -3.6508 16 1 3.1936 -1.3334 -3.4616 17 6 1.2500 -2.0943 -3.9944 18 6 2.2455 0.0274 -4.8045 19 6 1.2325 0.9534 -4.9746 20 6 1.2766 1.8433 -6.0315 21 6 2.3337 1.8099 -6.9206 22 6 3.3537 0.8857 -6.7491 23 8 4.3972 0.8543 -7.6192 24 6 3.3040 -0.0105 -5.6910 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7089 1.1613 3.4844 29 1 1.1488 0.5386 -2.5436 30 1 1.6132 -2.6086 -4.8842 31 1 1.2132 -2.7946 -3.1599 32 1 0.2509 -1.7018 -4.1836 33 1 0.4060 0.9819 -4.2799 34 1 0.4844 2.5658 -6.1619 35 1 2.3679 2.5057 -7.7459 36 1 4.2593 0.2708 -8.3778 37 1 4.0948 -0.7340 -5.5578 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597408821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:00 Heat of formation + Delta-G solvation = -89.209067 kcal Electronic energy + Delta-G solvation = -19426.372569 eV Core-core repulsion = 16360.423451 eV Total energy + Delta-G solvation = -3065.949118 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.21320 -40.27171 -38.08686 -36.09314 -35.72026 -33.18780 -31.91322 -30.72591 -29.94882 -27.19940 -25.41303 -24.17462 -23.61533 -21.89657 -20.97592 -19.19643 -18.30503 -17.91852 -17.29730 -17.06087 -16.37790 -16.27419 -15.90480 -15.80187 -14.93103 -14.76194 -14.60767 -14.35879 -14.12268 -13.51104 -13.23086 -13.08342 -12.98188 -12.94667 -12.68736 -12.58699 -12.39222 -12.26681 -12.15720 -12.01857 -11.38945 -11.02367 -10.60600 -10.32937 -10.07130 -9.80631 -9.57133 -8.14827 -6.24950 0.24798 0.33357 1.39417 1.41400 1.54907 1.93690 2.32889 2.50553 2.69778 3.14744 3.26953 3.60601 3.92701 4.19225 4.22091 4.26059 4.31571 4.45355 4.58595 4.72131 4.75816 4.87237 4.93653 4.96199 5.00471 5.05256 5.21310 5.41908 5.44364 5.46811 5.50982 5.68742 5.76554 5.87805 5.95537 6.22256 6.73400 6.86468 6.86691 7.40500 7.54619 8.91189 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.034897 B = 0.004100 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.160660 B = 6827.662158 C = 7015.162770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.023 3.977 3 H 0.039 0.961 4 C -0.528 4.528 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.273 1.273 12 C 0.523 3.477 13 O -0.585 6.585 14 N -0.720 5.720 15 C 0.179 3.821 16 H 0.068 0.932 17 C -0.148 4.148 18 C -0.075 4.075 19 C -0.129 4.129 20 C -0.094 4.094 21 C -0.149 4.149 22 C 0.102 3.898 23 O -0.510 6.510 24 C -0.151 4.151 25 H 0.070 0.930 26 H 0.052 0.948 27 H 0.023 0.977 28 H 0.265 0.735 29 H 0.408 0.592 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.136 0.864 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.410 0.590 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.107 2.373 -21.240 21.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.001 3.999 3 H 0.057 0.943 4 C -0.566 4.566 5 H 0.066 0.934 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.200 1.200 11 H -0.198 1.198 12 C 0.313 3.687 13 O -0.465 6.465 14 N -0.374 5.374 15 C 0.075 3.925 16 H 0.086 0.914 17 C -0.206 4.206 18 C -0.076 4.076 19 C -0.147 4.147 20 C -0.112 4.112 21 C -0.167 4.167 22 C 0.058 3.942 23 O -0.324 6.324 24 C -0.170 4.170 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.245 0.755 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.154 0.846 34 H 0.174 0.826 35 H 0.166 0.834 36 H 0.270 0.730 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.432 2.169 -20.648 20.810 hybrid contribution 0.133 -0.537 0.739 0.923 sum -1.299 1.631 -19.908 20.017 Atomic orbital electron populations 1.21542 0.94814 0.99492 1.01751 1.18828 0.95550 0.95843 0.89636 0.94278 1.21318 1.31496 1.12670 0.91145 0.93399 1.25588 0.95216 0.95756 1.01393 1.69956 1.37281 1.23564 1.24221 0.85551 0.78363 0.78573 0.79439 1.20516 1.20019 1.19835 1.21543 0.78022 0.83676 0.85493 1.90505 1.39872 1.28634 1.87468 1.46179 1.54340 1.32440 1.04460 1.19738 0.98680 0.91687 0.82424 0.91386 1.22076 0.99855 0.97090 1.01605 1.19710 0.95382 0.97004 0.95523 1.21201 0.98754 0.95632 0.99158 1.21339 0.98423 0.98239 0.93225 1.21709 0.93346 1.00004 1.01661 1.18515 0.88091 0.95682 0.91945 1.84785 1.39033 1.70282 1.38266 1.21356 0.98546 1.00386 0.96672 0.91103 0.92870 0.95740 0.92616 0.75510 0.89955 0.94147 0.90844 0.84605 0.82595 0.83378 0.73049 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.87 71.98 0.64 -4.71 16 2 C 0.02 1.15 2.64 -12.29 -0.03 1.12 16 3 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.53 -30.96 8.37 25.60 0.21 -30.75 16 5 H 0.05 3.02 6.75 -2.91 -0.02 3.00 16 6 C 0.02 1.10 5.30 84.65 0.45 1.55 16 7 N -0.91 -51.36 11.32 21.45 0.24 -51.12 16 8 Si 0.95 45.36 29.54 68.60 2.03 47.38 16 9 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 12 C 0.52 24.32 7.11 87.66 0.62 24.95 16 13 O -0.59 -31.59 15.12 -3.05 -0.05 -31.63 16 14 N -0.72 -24.87 4.92 -446.09 -2.19 -27.07 16 15 C 0.18 5.35 2.78 44.24 0.12 5.48 16 16 H 0.07 2.37 7.44 -2.38 -0.02 2.35 16 17 C -0.15 -3.92 9.46 71.98 0.68 -3.24 16 18 C -0.08 -1.82 4.95 -19.88 -0.10 -1.92 16 19 C -0.13 -2.60 9.05 22.28 0.20 -2.40 16 20 C -0.09 -1.55 10.04 22.25 0.22 -1.32 16 21 C -0.15 -2.51 9.99 22.37 0.22 -2.29 16 22 C 0.10 2.05 6.70 22.51 0.15 2.20 16 23 O -0.51 -8.91 13.50 -92.47 -1.25 -10.16 16 24 C -0.15 -3.47 9.61 22.37 0.21 -3.26 16 25 H 0.07 3.56 6.07 -2.39 -0.01 3.54 16 26 H 0.05 1.91 7.56 -2.39 -0.02 1.89 16 27 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.41 11.89 6.28 -92.71 -0.58 11.31 16 30 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.14 2.42 6.91 -2.91 -0.02 2.40 16 34 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.41 2.86 9.06 -74.06 -0.67 2.19 16 37 H 0.13 2.87 8.04 -2.91 -0.02 2.85 16 Total: -1.00 -71.76 313.85 2.23 -69.53 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -0.16 Total: 17.67 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 3.61 Total: -14.60 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -1.95 Total: -78.19 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -1.29 Total: -41.80 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -71.76 2.23 -69.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597408821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.679 kcal (2) G-P(sol) polarization free energy of solvation -71.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds