Wall clock time and date at job start Mon Mar 30 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.47323 * 2 1 4 4 C 1.38274 * 119.91663 * 89.99857 * 3 2 1 5 5 C 1.38250 * 120.17465 * 180.02562 * 4 3 2 6 6 C 1.38552 * 120.01552 * 359.97438 * 5 4 3 7 7 O 1.35971 * 120.07902 * 179.97438 * 6 5 4 8 8 C 1.39293 * 119.83310 * 359.97438 * 6 5 4 9 9 N 1.40128 * 120.08521 * 180.02562 * 8 6 5 10 10 C 1.34774 * 119.99955 * 214.90017 * 9 8 6 11 11 O 1.21297 * 120.00056 * 355.54108 * 10 9 8 12 12 C 1.50706 * 120.00136 * 175.54412 * 10 9 8 13 13 H 1.08994 * 109.46929 * 59.99467 * 12 10 9 14 14 C 1.53003 * 109.46783 * 299.99768 * 12 10 9 15 15 C 1.50698 * 109.47086 * 180.02562 * 12 10 9 16 16 H 1.07998 * 120.00322 * 359.97438 * 15 12 10 17 17 C 1.37882 * 119.99744 * 180.02562 * 15 12 10 18 18 N 1.31509 * 119.99918 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99862 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47043 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46956 * 119.99916 * 19 17 15 22 22 H 1.48494 * 109.46917 * 239.99722 * 19 17 15 23 23 C 1.38199 * 119.91346 * 270.29685 * 3 2 1 24 24 H 1.09006 * 109.46842 * 60.00288 * 1 2 3 25 25 H 1.09000 * 109.47412 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47164 * 300.00447 * 1 2 3 27 27 H 1.08998 * 109.47472 * 239.99786 * 2 1 3 28 28 H 1.09006 * 109.46842 * 119.99712 * 2 1 3 29 29 H 1.08002 * 119.91279 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.98697 * 179.97438 * 5 4 3 31 31 H 0.96700 * 114.00023 * 270.02149 * 7 6 5 32 32 H 0.97003 * 120.00369 * 34.90324 * 9 8 6 33 33 H 1.08994 * 109.47338 * 300.00329 * 14 12 10 34 34 H 1.09000 * 109.46929 * 179.97438 * 14 12 10 35 35 H 1.09002 * 109.46640 * 60.00090 * 14 12 10 36 36 H 0.96997 * 120.00043 * 180.02562 * 18 17 15 37 37 H 1.07999 * 120.00939 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0710 1.1985 5 6 2.7226 3.3746 1.2047 6 6 2.9555 4.0331 0.0081 7 8 3.4078 5.3154 0.0128 8 6 2.7251 3.3782 -1.1995 9 7 2.9594 4.0390 -2.4127 10 6 2.1666 3.7976 -3.4756 11 8 1.3018 2.9498 -3.4070 12 6 2.3547 4.5807 -4.7494 13 1 3.3629 4.4180 -5.1304 14 6 2.1505 6.0705 -4.4669 15 6 1.3496 4.1219 -5.7742 16 1 0.6454 3.3411 -5.5280 17 6 1.3299 4.6984 -7.0266 18 7 2.1878 5.6489 -7.3265 19 14 0.0845 4.1292 -8.2972 20 1 -0.7616 3.0566 -7.7151 21 1 -0.7733 5.2736 -8.6968 22 1 0.7979 3.6054 -9.4895 23 6 2.2563 2.0727 -1.1979 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.0809 1.5594 2.1322 30 1 2.9007 3.8797 2.1426 31 1 2.7055 5.9802 0.0140 32 1 3.6921 4.6703 -2.4877 33 1 1.1424 6.2332 -4.0858 34 1 2.2870 6.6370 -5.3880 35 1 2.8772 6.4026 -3.7254 36 1 2.1737 6.0547 -8.2074 37 1 2.0709 1.5641 -2.1324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597441886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:40 Heat of formation + Delta-G solvation = -70.254272 kcal Electronic energy + Delta-G solvation = -19713.507226 eV Core-core repulsion = 16648.380050 eV Total energy + Delta-G solvation = -3065.127176 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.31917 -38.47542 -36.96192 -34.38572 -33.84384 -32.95387 -30.81876 -29.31994 -28.14730 -25.20408 -23.73167 -23.55026 -22.05183 -20.71529 -19.43567 -18.34049 -16.94439 -16.33597 -15.91179 -15.55151 -15.25145 -14.53402 -14.33159 -14.23844 -13.70401 -13.40829 -13.30606 -13.03683 -12.60393 -12.24610 -12.10436 -11.76911 -11.49722 -11.07454 -11.02398 -10.91742 -10.80870 -10.72148 -10.62466 -10.34133 -10.02520 -9.83705 -9.03643 -8.74616 -8.45291 -8.35419 -7.71898 -6.08805 -4.12610 1.34029 1.53169 3.29181 3.36937 3.42746 3.44732 3.69275 3.85261 4.37087 4.42931 4.85212 4.94093 5.20914 5.24822 5.35903 5.43556 5.55403 5.66254 5.75867 5.89723 5.98579 6.02861 6.23957 6.28720 6.36124 6.49109 6.56825 6.69614 6.75053 6.83040 6.88421 7.18516 7.38552 7.67997 7.75650 7.89601 8.03769 8.29525 8.95764 9.01441 9.53264 10.98869 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023040 B = 0.005401 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.989893 B = 5183.266675 C = 6217.113298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.073 4.073 4 C -0.132 4.132 5 C -0.125 4.125 6 C 0.059 3.941 7 O -0.496 6.496 8 C 0.145 3.855 9 N -0.683 5.683 10 C 0.518 3.482 11 O -0.524 6.524 12 C 0.031 3.969 13 H 0.056 0.944 14 C -0.133 4.133 15 C -0.503 4.503 16 H 0.075 0.925 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.900 3.100 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.112 4.112 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.385 0.615 32 H 0.411 0.589 33 H 0.031 0.969 34 H 0.095 0.905 35 H 0.014 0.986 36 H 0.261 0.739 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.311 -4.181 15.438 16.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.074 4.074 4 C -0.151 4.151 5 C -0.144 4.144 6 C 0.012 3.988 7 O -0.305 6.305 8 C 0.048 3.952 9 N -0.329 5.329 10 C 0.309 3.691 11 O -0.398 6.398 12 C 0.010 3.990 13 H 0.074 0.926 14 C -0.191 4.191 15 C -0.541 4.541 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.728 3.272 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.132 4.132 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.241 0.759 32 H 0.247 0.753 33 H 0.050 0.950 34 H 0.114 0.886 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.260 -4.903 15.223 16.043 hybrid contribution -0.653 0.517 -0.699 1.087 sum 0.608 -4.386 14.524 15.184 Atomic orbital electron populations 1.21751 0.94697 1.01484 1.02531 1.20503 0.96296 0.92487 1.02582 1.19813 0.98692 0.96328 0.92576 1.20762 1.02301 0.94622 0.97449 1.21104 1.00665 0.95716 0.96917 1.18204 1.03755 0.85679 0.91152 1.84806 1.36029 1.13294 1.96367 1.18308 0.99021 0.92096 0.85770 1.44066 1.34228 1.45212 1.09382 1.22335 0.78932 0.82823 0.84969 1.90525 1.33528 1.33137 1.82650 1.18915 1.00149 0.92238 0.87694 0.92637 1.21759 0.97893 0.97752 1.01728 1.21150 1.16717 1.20538 0.95719 0.90643 1.24951 0.96020 0.94921 0.98295 1.69872 1.36316 1.25807 1.21435 0.86381 0.81148 0.78702 0.80945 1.19548 1.21005 1.20984 1.21225 1.00328 0.92483 0.99163 0.91963 0.92607 0.92789 0.90949 0.91261 0.86106 0.85600 0.75941 0.75271 0.94951 0.88624 0.96725 0.92909 0.83699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.89 37.16 0.37 -1.30 16 2 C -0.08 -0.95 6.06 -27.88 -0.17 -1.11 16 3 C -0.07 -1.03 5.13 -104.62 -0.54 -1.57 16 4 C -0.13 -1.65 9.69 -39.56 -0.38 -2.03 16 5 C -0.12 -1.61 9.98 -39.46 -0.39 -2.00 16 6 C 0.06 0.88 6.72 -39.07 -0.26 0.61 16 7 O -0.50 -6.54 13.07 -19.65 -0.26 -6.80 16 8 C 0.14 2.50 6.32 -83.49 -0.53 1.97 16 9 N -0.68 -12.52 5.05 -9.74 -0.05 -12.57 16 10 C 0.52 11.62 7.00 -10.98 -0.08 11.55 16 11 O -0.52 -13.09 12.87 5.54 0.07 -13.02 16 12 C 0.03 0.76 2.64 -92.92 -0.24 0.51 16 13 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 14 C -0.13 -3.00 8.87 37.16 0.33 -2.67 16 15 C -0.50 -13.98 8.37 -34.44 -0.29 -14.27 16 16 H 0.08 2.21 6.75 -52.49 -0.35 1.86 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 18 N -0.90 -24.76 11.32 55.43 0.63 -24.13 16 19 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.11 -1.92 8.35 -39.42 -0.33 -2.25 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 28 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.39 3.69 9.06 45.56 0.41 4.10 16 32 H 0.41 6.74 8.13 -40.82 -0.33 6.41 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 2.38 6.07 -51.93 -0.32 2.06 16 35 H 0.01 0.26 7.67 -51.93 -0.40 -0.13 16 36 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.15 2.82 6.19 -52.49 -0.32 2.49 16 LS Contribution 312.68 15.07 4.71 4.71 Total: -1.00 -30.70 312.68 -6.77 -37.48 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -4.25 Total: 8.89 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -2.61 Total: -11.04 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.58 Total: -36.70 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.19 Total: -19.82 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.70 -6.77 -37.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597441886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.779 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds