Wall clock time and date at job start Mon Mar 30 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.47323 * 2 1 4 4 C 1.38274 * 119.91663 * 89.99857 * 3 2 1 5 5 C 1.38250 * 120.17465 * 180.02562 * 4 3 2 6 6 C 1.38552 * 120.01552 * 359.97438 * 5 4 3 7 7 O 1.35971 * 120.07902 * 179.97438 * 6 5 4 8 8 C 1.39293 * 119.83310 * 359.97438 * 6 5 4 9 9 N 1.40128 * 120.08521 * 180.02562 * 8 6 5 10 10 C 1.34774 * 119.99955 * 214.90017 * 9 8 6 11 11 O 1.21297 * 120.00056 * 355.54108 * 10 9 8 12 12 C 1.50706 * 120.00136 * 175.54412 * 10 9 8 13 13 H 1.08994 * 109.46929 * 59.99467 * 12 10 9 14 14 C 1.53003 * 109.46783 * 299.99768 * 12 10 9 15 15 C 1.50698 * 109.47086 * 180.02562 * 12 10 9 16 16 H 1.07998 * 120.00322 * 359.97438 * 15 12 10 17 17 C 1.37882 * 119.99744 * 180.02562 * 15 12 10 18 18 N 1.31509 * 119.99918 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 119.99862 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47043 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46956 * 119.99916 * 19 17 15 22 22 H 1.48494 * 109.46917 * 239.99722 * 19 17 15 23 23 C 1.38199 * 119.91346 * 270.29685 * 3 2 1 24 24 H 1.09006 * 109.46842 * 60.00288 * 1 2 3 25 25 H 1.09000 * 109.47412 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47164 * 300.00447 * 1 2 3 27 27 H 1.08998 * 109.47472 * 239.99786 * 2 1 3 28 28 H 1.09006 * 109.46842 * 119.99712 * 2 1 3 29 29 H 1.08002 * 119.91279 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.98697 * 179.97438 * 5 4 3 31 31 H 0.96700 * 114.00023 * 270.02149 * 7 6 5 32 32 H 0.97003 * 120.00369 * 34.90324 * 9 8 6 33 33 H 1.08994 * 109.47338 * 300.00329 * 14 12 10 34 34 H 1.09000 * 109.46929 * 179.97438 * 14 12 10 35 35 H 1.09002 * 109.46640 * 60.00090 * 14 12 10 36 36 H 0.96997 * 120.00043 * 180.02562 * 18 17 15 37 37 H 1.07999 * 120.00939 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0710 1.1985 5 6 2.7226 3.3746 1.2047 6 6 2.9555 4.0331 0.0081 7 8 3.4078 5.3154 0.0128 8 6 2.7251 3.3782 -1.1995 9 7 2.9594 4.0390 -2.4127 10 6 2.1666 3.7976 -3.4756 11 8 1.3018 2.9498 -3.4070 12 6 2.3547 4.5807 -4.7494 13 1 3.3629 4.4180 -5.1304 14 6 2.1505 6.0705 -4.4669 15 6 1.3496 4.1219 -5.7742 16 1 0.6454 3.3411 -5.5280 17 6 1.3299 4.6984 -7.0266 18 7 2.1878 5.6489 -7.3265 19 14 0.0845 4.1292 -8.2972 20 1 -0.7616 3.0566 -7.7151 21 1 -0.7733 5.2736 -8.6968 22 1 0.7979 3.6054 -9.4895 23 6 2.2563 2.0727 -1.1979 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.0809 1.5594 2.1322 30 1 2.9007 3.8797 2.1426 31 1 2.7055 5.9802 0.0140 32 1 3.6921 4.6703 -2.4877 33 1 1.1424 6.2332 -4.0858 34 1 2.2870 6.6370 -5.3880 35 1 2.8772 6.4026 -3.7254 36 1 2.1737 6.0547 -8.2074 37 1 2.0709 1.5641 -2.1324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597441886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:39 Heat of formation + Delta-G solvation = -90.868139 kcal Electronic energy + Delta-G solvation = -19714.401111 eV Core-core repulsion = 16648.380050 eV Total energy + Delta-G solvation = -3066.021061 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.67518 -39.95846 -38.00673 -35.93565 -35.76175 -34.00982 -32.69375 -30.62555 -29.27960 -27.24879 -25.19656 -24.69888 -23.46214 -21.88275 -21.09074 -19.48076 -18.54068 -18.04413 -17.51248 -16.81549 -16.67688 -16.20534 -15.92653 -15.42834 -14.92041 -14.81545 -14.44992 -14.41278 -14.30280 -13.61315 -13.29464 -13.19212 -12.97330 -12.79809 -12.64524 -12.59172 -12.26786 -12.06725 -11.99139 -11.85745 -11.73979 -11.21073 -11.06477 -10.62589 -10.33314 -9.57572 -8.98683 -8.18720 -6.29580 0.21402 0.37218 1.38145 1.40286 1.53358 1.78090 2.18713 2.45085 2.67732 3.11271 3.31037 3.82303 3.94309 4.17291 4.27399 4.38662 4.50976 4.52749 4.63112 4.68989 4.73852 4.89226 4.93859 5.02762 5.06532 5.11780 5.28465 5.34287 5.36883 5.43512 5.53070 5.68728 5.72814 5.88587 5.98640 6.14502 6.57183 6.79083 6.79438 7.29857 7.41468 8.87526 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023040 B = 0.005401 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.989893 B = 5183.266675 C = 6217.113298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.079 4.079 4 C -0.117 4.117 5 C -0.119 4.119 6 C 0.064 3.936 7 O -0.499 6.499 8 C 0.107 3.893 9 N -0.667 5.667 10 C 0.521 3.479 11 O -0.559 6.559 12 C 0.027 3.973 13 H 0.043 0.957 14 C -0.119 4.119 15 C -0.529 4.529 16 H 0.050 0.950 17 C 0.021 3.979 18 N -0.910 5.910 19 Si 0.957 3.043 20 H -0.280 1.280 21 H -0.273 1.273 22 H -0.274 1.274 23 C -0.135 4.135 24 H 0.028 0.972 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.161 0.839 30 H 0.160 0.840 31 H 0.403 0.597 32 H 0.420 0.580 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.266 0.734 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.461 -4.137 18.008 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.079 4.079 4 C -0.136 4.136 5 C -0.138 4.138 6 C 0.017 3.983 7 O -0.311 6.311 8 C 0.012 3.988 9 N -0.313 5.313 10 C 0.312 3.688 11 O -0.437 6.437 12 C 0.006 3.994 13 H 0.061 0.939 14 C -0.177 4.177 15 C -0.567 4.567 16 H 0.068 0.932 17 C -0.179 4.179 18 N -0.549 5.549 19 Si 0.783 3.217 20 H -0.205 1.205 21 H -0.198 1.198 22 H -0.200 1.200 23 C -0.156 4.156 24 H 0.048 0.952 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.120 0.880 29 H 0.178 0.822 30 H 0.178 0.822 31 H 0.261 0.739 32 H 0.257 0.743 33 H 0.043 0.957 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.438 -4.831 17.825 18.524 hybrid contribution -0.656 0.487 -1.381 1.605 sum 0.783 -4.344 16.444 17.026 Atomic orbital electron populations 1.21726 0.94517 1.02442 1.01463 1.20577 0.96363 0.91278 1.03626 1.20094 0.98281 0.97442 0.92111 1.21210 0.99885 0.94408 0.98057 1.21503 0.99190 0.95817 0.97281 1.18304 1.02909 0.86335 0.90758 1.84761 1.36997 1.13054 1.96258 1.18569 1.01728 0.92646 0.85882 1.43629 1.33493 1.45021 1.09163 1.21849 0.79169 0.82279 0.85480 1.90513 1.35302 1.34461 1.83383 1.18831 0.98469 0.93757 0.88367 0.93894 1.21561 0.98549 0.96009 1.01598 1.21271 1.17467 1.20599 0.97410 0.93178 1.25597 0.97606 0.94968 0.99702 1.69949 1.36973 1.26027 1.21975 0.85517 0.79142 0.78266 0.78810 1.20454 1.19846 1.19953 1.21116 1.02128 0.93117 0.99234 0.95224 0.90692 0.91570 0.92056 0.88042 0.82194 0.82247 0.73925 0.74277 0.95657 0.90818 0.93009 0.92499 0.87236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.89 71.98 0.71 -2.38 16 2 C -0.08 -1.76 6.06 29.85 0.18 -1.58 16 3 C -0.08 -2.11 5.13 -19.86 -0.10 -2.21 16 4 C -0.12 -2.47 9.69 22.28 0.22 -2.26 16 5 C -0.12 -2.60 9.98 22.35 0.22 -2.38 16 6 C 0.06 1.76 6.72 22.60 0.15 1.91 16 7 O -0.50 -11.90 13.07 -93.22 -1.22 -13.11 16 8 C 0.11 3.69 6.32 38.18 0.24 3.94 16 9 N -0.67 -24.91 5.05 -303.13 -1.53 -26.44 16 10 C 0.52 24.41 7.00 87.66 0.61 25.02 16 11 O -0.56 -29.68 12.87 -3.08 -0.04 -29.72 16 12 C 0.03 1.36 2.64 -12.28 -0.03 1.33 16 13 H 0.04 2.26 8.14 -2.39 -0.02 2.24 16 14 C -0.12 -5.42 8.87 71.98 0.64 -4.78 16 15 C -0.53 -30.58 8.37 25.60 0.21 -30.37 16 16 H 0.05 3.10 6.75 -2.91 -0.02 3.08 16 17 C 0.02 1.15 5.30 84.66 0.45 1.60 16 18 N -0.91 -50.90 11.32 21.45 0.24 -50.65 16 19 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 20 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 23 C -0.14 -4.80 8.35 22.38 0.19 -4.61 16 24 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.06 1.45 8.09 -2.39 -0.02 1.43 16 28 H 0.10 1.56 8.08 -2.38 -0.02 1.54 16 29 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 31 H 0.40 6.62 9.06 -74.06 -0.67 5.95 16 32 H 0.42 13.71 8.13 -92.71 -0.75 12.96 16 33 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 35 H 0.05 1.91 7.67 -2.39 -0.02 1.89 16 36 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 37 H 0.11 4.62 6.19 -2.91 -0.02 4.60 16 Total: -1.00 -68.94 312.68 2.85 -66.10 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.33 Total: 23.75 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 3.69 Total: -16.77 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -1.29 Total: -77.09 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -1.26 Total: -42.83 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -68.94 2.85 -66.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597441886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.770 kcal (2) G-P(sol) polarization free energy of solvation -68.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds