Wall clock time and date at job start Mon Mar 30 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47214 * 2 1 4 4 C 1.38286 * 119.91572 * 89.99426 * 3 2 1 5 5 C 1.38247 * 120.17713 * 180.02562 * 4 3 2 6 6 C 1.38546 * 120.01279 * 0.02562 * 5 4 3 7 7 O 1.35975 * 120.08240 * 179.97438 * 6 5 4 8 8 C 1.39299 * 119.83763 * 359.97438 * 6 5 4 9 9 N 1.40128 * 120.08360 * 180.02562 * 8 6 5 10 10 C 1.34776 * 119.99768 * 214.91017 * 9 8 6 11 11 O 1.21298 * 120.00108 * 355.55749 * 10 9 8 12 12 C 1.50700 * 120.00113 * 175.55717 * 10 9 8 13 13 H 1.08997 * 109.46999 * 299.99832 * 12 10 9 14 14 C 1.52996 * 109.47000 * 60.00164 * 12 10 9 15 15 C 1.50705 * 109.47130 * 180.02562 * 12 10 9 16 16 H 1.08003 * 120.00082 * 0.02562 * 15 12 10 17 17 C 1.37870 * 120.00003 * 179.97438 * 15 12 10 18 18 N 1.31518 * 120.00394 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 120.00239 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.47144 * 59.99867 * 19 17 15 21 21 H 1.48494 * 109.47547 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47340 * 300.00251 * 19 17 15 23 23 C 1.38189 * 119.91974 * 270.27960 * 3 2 1 24 24 H 1.09001 * 109.46971 * 60.00364 * 1 2 3 25 25 H 1.09008 * 109.46801 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47663 * 299.99504 * 1 2 3 27 27 H 1.09002 * 109.47734 * 239.99760 * 2 1 3 28 28 H 1.09003 * 109.47288 * 120.00057 * 2 1 3 29 29 H 1.07999 * 119.91049 * 0.02852 * 4 3 2 30 30 H 1.07994 * 119.98806 * 179.97438 * 5 4 3 31 31 H 0.96700 * 113.99436 * 270.02531 * 7 6 5 32 32 H 0.97003 * 120.00392 * 34.91731 * 9 8 6 33 33 H 1.09001 * 109.47476 * 299.99717 * 14 12 10 34 34 H 1.09001 * 109.46698 * 180.02562 * 14 12 10 35 35 H 1.09000 * 109.47273 * 60.00444 * 14 12 10 36 36 H 0.96994 * 120.00773 * 180.02562 * 18 17 15 37 37 H 1.08006 * 120.00680 * 359.97007 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0711 1.1986 5 6 2.7224 3.3746 1.2049 6 6 2.9544 4.0335 0.0084 7 8 3.4066 5.3158 0.0129 8 6 2.7231 3.3790 -1.1993 9 7 2.9565 4.0403 -2.4125 10 6 2.1628 3.7993 -3.4748 11 8 1.2977 2.9518 -3.4058 12 6 2.3501 4.5827 -4.7485 13 1 2.2051 5.6440 -4.5469 14 6 3.7647 4.3539 -5.2846 15 6 1.3440 4.1244 -5.7727 16 1 0.6392 3.3443 -5.5258 17 6 1.3227 4.7019 -7.0245 18 7 2.1807 5.6523 -7.3250 19 14 0.0752 4.1345 -8.2938 20 1 -1.2975 4.3569 -7.7726 21 1 0.2590 4.9072 -9.5484 22 1 0.2718 2.6885 -8.5691 23 6 2.2566 2.0726 -1.1977 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0815 1.5592 2.1323 30 1 2.9005 3.8797 2.1427 31 1 2.7043 5.9805 0.0150 32 1 3.6892 4.6714 -2.4878 33 1 4.4922 4.6857 -4.5437 34 1 3.9003 4.9209 -6.2055 35 1 3.9096 3.2926 -5.4862 36 1 2.1655 6.0589 -8.2055 37 1 2.0723 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597441889.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:42 Heat of formation + Delta-G solvation = -70.267988 kcal Electronic energy + Delta-G solvation = -19694.332434 eV Core-core repulsion = 16629.204663 eV Total energy + Delta-G solvation = -3065.127771 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.32041 -38.47908 -36.96540 -34.38529 -33.84349 -32.95558 -30.81726 -29.32572 -28.14501 -25.20477 -23.72186 -23.54087 -22.08807 -20.71626 -19.40157 -18.33369 -16.94736 -16.31216 -15.95051 -15.55337 -15.32904 -14.53756 -14.33681 -14.15209 -13.61465 -13.47941 -13.33198 -13.01221 -12.66446 -12.27219 -12.06400 -11.69545 -11.52640 -11.05161 -11.01494 -10.91902 -10.84573 -10.74163 -10.61848 -10.35907 -10.02461 -9.83023 -9.06177 -8.73628 -8.45882 -8.34734 -7.71926 -6.08246 -4.12413 1.33807 1.53053 3.33196 3.36118 3.40686 3.43424 3.68992 3.85129 4.36572 4.42858 4.85117 4.93904 5.20828 5.24997 5.35784 5.43509 5.55317 5.66050 5.75912 5.89580 5.98569 6.02788 6.23845 6.28676 6.36193 6.48900 6.57264 6.69855 6.74928 6.83522 6.87407 7.18321 7.39242 7.68726 7.75235 7.89561 8.03671 8.29680 8.95092 9.01336 9.53339 10.99257 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.022942 B = 0.005337 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.176508 B = 5244.812695 C = 6171.245173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.073 4.073 4 C -0.132 4.132 5 C -0.125 4.125 6 C 0.059 3.941 7 O -0.496 6.496 8 C 0.144 3.856 9 N -0.683 5.683 10 C 0.518 3.482 11 O -0.524 6.524 12 C 0.032 3.968 13 H 0.056 0.944 14 C -0.135 4.135 15 C -0.505 4.505 16 H 0.074 0.926 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.902 3.098 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.111 4.111 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.385 0.615 32 H 0.411 0.589 33 H 0.013 0.987 34 H 0.096 0.904 35 H 0.033 0.967 36 H 0.262 0.738 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.694 -4.559 15.217 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.074 4.074 4 C -0.151 4.151 5 C -0.144 4.144 6 C 0.012 3.988 7 O -0.305 6.305 8 C 0.048 3.952 9 N -0.329 5.329 10 C 0.309 3.691 11 O -0.399 6.399 12 C 0.011 3.989 13 H 0.073 0.927 14 C -0.193 4.193 15 C -0.543 4.543 16 H 0.092 0.908 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.730 3.270 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.132 4.132 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.241 0.759 32 H 0.248 0.752 33 H 0.032 0.968 34 H 0.114 0.886 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.646 -5.272 14.997 15.981 hybrid contribution -0.661 0.488 -0.686 1.070 sum 0.986 -4.784 14.311 15.121 Atomic orbital electron populations 1.21750 0.94691 1.01487 1.02531 1.20503 0.96299 0.92486 1.02585 1.19814 0.98681 0.96331 0.92575 1.20764 1.02300 0.94623 0.97449 1.21099 1.00659 0.95715 0.96911 1.18205 1.03793 0.85680 0.91154 1.84810 1.36028 1.13304 1.96372 1.18310 0.99024 0.92101 0.85766 1.44074 1.34225 1.45267 1.09364 1.22336 0.78788 0.83086 0.84843 1.90524 1.33594 1.33115 1.82619 1.18900 0.96414 0.95811 0.87743 0.92658 1.21775 0.94356 1.00669 1.02481 1.21068 1.16000 1.21064 0.96159 0.90756 1.24944 0.96033 0.94843 0.98303 1.69853 1.36107 1.25709 1.21775 0.86482 0.81621 0.78779 0.80122 1.20180 1.21316 1.20151 1.21219 1.00328 0.92463 0.99152 0.91967 0.92607 0.92779 0.90953 0.91259 0.86100 0.85591 0.75944 0.75243 0.96805 0.88564 0.94809 0.92790 0.83721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.89 37.16 0.37 -1.30 16 2 C -0.08 -0.95 6.06 -27.88 -0.17 -1.12 16 3 C -0.07 -1.03 5.13 -104.62 -0.54 -1.57 16 4 C -0.13 -1.65 9.69 -39.56 -0.38 -2.03 16 5 C -0.12 -1.60 9.98 -39.46 -0.39 -2.00 16 6 C 0.06 0.87 6.72 -39.07 -0.26 0.61 16 7 O -0.50 -6.53 13.07 -19.66 -0.26 -6.79 16 8 C 0.14 2.50 6.32 -83.49 -0.53 1.97 16 9 N -0.68 -12.56 5.11 -9.75 -0.05 -12.61 16 10 C 0.52 11.64 7.00 -10.99 -0.08 11.57 16 11 O -0.52 -13.10 12.88 5.54 0.07 -13.03 16 12 C 0.03 0.79 2.64 -92.92 -0.25 0.54 16 13 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 14 C -0.13 -3.06 8.86 37.16 0.33 -2.73 16 15 C -0.50 -14.03 8.37 -34.44 -0.29 -14.32 16 16 H 0.07 2.17 6.75 -52.48 -0.35 1.81 16 17 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 18 N -0.90 -24.77 11.32 55.43 0.63 -24.14 16 19 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 C -0.11 -1.92 8.35 -39.42 -0.33 -2.25 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 28 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.39 3.63 9.06 45.56 0.41 4.04 16 32 H 0.41 6.78 7.87 -40.82 -0.32 6.45 16 33 H 0.01 0.25 7.47 -51.93 -0.39 -0.14 16 34 H 0.10 2.40 6.07 -51.93 -0.32 2.08 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.15 2.82 6.20 -52.48 -0.33 2.50 16 LS Contribution 312.30 15.07 4.71 4.71 Total: -1.00 -30.66 312.30 -6.76 -37.42 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -4.23 Total: 8.99 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -2.61 Total: -11.08 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.58 Total: -36.74 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.19 Total: -19.81 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.66 -6.76 -37.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597441889.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.846 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds