Wall clock time and date at job start Mon Mar 30 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.46764 * 2 1 4 4 C 1.38103 * 120.00832 * 265.02287 * 3 2 1 5 5 C 1.38697 * 120.01498 * 179.97438 * 4 3 2 6 6 O 1.35975 * 119.98494 * 180.02562 * 5 4 3 7 7 C 1.38744 * 120.03042 * 359.97438 * 5 4 3 8 8 C 1.38066 * 120.01529 * 359.76091 * 7 5 4 9 9 C 1.38829 * 120.00654 * 85.00142 * 3 2 1 10 10 N 1.40103 * 120.01571 * 359.97438 * 9 3 2 11 11 C 1.34775 * 120.00047 * 155.44000 * 10 9 3 12 12 O 1.21293 * 119.99940 * 354.47672 * 11 10 9 13 13 C 1.50706 * 120.00019 * 174.47609 * 11 10 9 14 14 H 1.08996 * 109.47273 * 60.00263 * 13 11 10 15 15 C 1.52999 * 109.46979 * 300.00018 * 13 11 10 16 16 C 1.50701 * 109.47038 * 180.02562 * 13 11 10 17 17 H 1.08008 * 119.99841 * 359.97438 * 16 13 11 18 18 C 1.37872 * 120.00057 * 179.97438 * 16 13 11 19 19 N 1.31513 * 120.00238 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00187 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.47089 * 59.99841 * 20 18 16 22 22 H 1.48500 * 109.47509 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47225 * 300.00283 * 20 18 16 24 24 H 1.09002 * 109.47548 * 299.99574 * 1 2 3 25 25 H 1.08996 * 109.47422 * 60.00146 * 1 2 3 26 26 H 1.09007 * 109.46995 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47283 * 240.00031 * 2 1 3 28 28 H 1.09005 * 109.47336 * 119.99573 * 2 1 3 29 29 H 1.08000 * 119.99132 * 359.95124 * 4 3 2 30 30 H 0.96704 * 114.00171 * 89.99310 * 6 5 4 31 31 H 1.08001 * 119.98941 * 180.02562 * 7 5 4 32 32 H 1.08000 * 120.00937 * 180.26913 * 8 7 5 33 33 H 0.97003 * 120.00028 * 335.44908 * 10 9 3 34 34 H 1.09001 * 109.46873 * 180.02562 * 15 13 11 35 35 H 1.09006 * 109.47329 * 300.00212 * 15 13 11 36 36 H 1.08997 * 109.47266 * 59.99913 * 15 13 11 37 37 H 0.96994 * 120.00615 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3602 2.0375 -1.1914 5 6 2.8220 3.3454 -1.1916 6 8 3.1443 3.9521 -2.3650 7 6 2.9542 4.0353 0.0049 8 6 2.6215 3.4219 1.1962 9 6 2.1649 2.1104 1.1976 10 7 1.8313 1.4858 2.4066 11 6 2.3896 1.9065 3.5589 12 8 3.2542 2.7569 3.5388 13 6 1.9396 1.3202 4.8723 14 1 2.1181 0.2449 4.8704 15 6 0.4459 1.5889 5.0656 16 6 2.7137 1.9564 5.9979 17 1 3.4576 2.7097 5.7836 18 6 2.4725 1.5769 7.3012 19 7 1.5665 0.6601 7.5622 20 14 3.4325 2.3650 8.6964 21 1 3.1899 3.8301 8.6986 22 1 2.9891 1.7874 9.9907 23 1 4.8823 2.1037 8.5092 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.2575 1.5011 -2.1231 30 1 2.4076 4.4205 -2.7810 31 1 3.3134 5.0538 0.0039 32 1 2.7203 3.9604 2.1271 33 1 1.1987 0.7505 2.4142 34 1 0.1205 1.1652 6.0157 35 1 0.2673 2.6642 5.0675 36 1 -0.1144 1.1291 4.2515 37 1 1.3970 0.3929 8.4791 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597560365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:45 Heat of formation + Delta-G solvation = -67.135949 kcal Electronic energy + Delta-G solvation = -19723.294473 eV Core-core repulsion = 16658.302517 eV Total energy + Delta-G solvation = -3064.991956 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.38151 -38.72239 -36.91308 -34.05379 -33.73990 -33.55097 -30.66688 -29.63199 -27.97879 -25.22240 -24.00043 -23.44274 -21.99917 -20.90099 -19.45614 -17.90107 -17.54289 -16.35166 -15.98571 -15.46629 -15.31187 -14.55380 -14.30769 -14.10463 -13.88261 -13.59505 -13.21379 -12.90987 -12.58899 -12.50398 -12.13787 -11.76070 -11.53880 -11.44106 -11.06944 -11.01622 -10.82711 -10.75775 -10.40815 -10.35742 -10.02779 -9.84291 -9.08415 -8.81817 -8.58740 -8.39472 -7.56448 -6.09840 -4.13874 1.37130 1.50370 3.32822 3.35740 3.37704 3.40636 3.66064 3.90770 4.32488 4.42131 4.78883 4.91506 5.14498 5.23555 5.26267 5.32701 5.49549 5.63018 5.74094 5.85403 5.88467 6.00355 6.16626 6.23066 6.33017 6.50115 6.58482 6.62189 6.71066 6.76009 6.82363 7.21866 7.36283 7.65561 7.73255 7.86446 8.01251 8.26349 8.92985 8.97374 9.52052 10.97716 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028480 B = 0.004951 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.898447 B = 5654.299669 C = 6417.961882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.112 4.112 4 C -0.121 4.121 5 C 0.067 3.933 6 O -0.501 6.501 7 C -0.125 4.125 8 C -0.119 4.119 9 C 0.165 3.835 10 N -0.683 5.683 11 C 0.518 3.482 12 O -0.520 6.520 13 C 0.031 3.969 14 H 0.055 0.945 15 C -0.134 4.134 16 C -0.505 4.505 17 H 0.075 0.925 18 C 0.060 3.940 19 N -0.896 5.896 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.276 1.276 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.125 0.875 30 H 0.382 0.618 31 H 0.126 0.874 32 H 0.153 0.847 33 H 0.407 0.593 34 H 0.096 0.904 35 H 0.033 0.967 36 H 0.012 0.988 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.347 0.172 -15.895 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 C -0.116 4.116 4 C -0.140 4.140 5 C 0.022 3.978 6 O -0.310 6.310 7 C -0.144 4.144 8 C -0.140 4.140 9 C 0.068 3.932 10 N -0.327 5.327 11 C 0.309 3.691 12 O -0.394 6.394 13 C 0.010 3.990 14 H 0.073 0.927 15 C -0.192 4.192 16 C -0.543 4.543 17 H 0.093 0.907 18 C -0.141 4.141 19 N -0.535 5.535 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.143 0.857 30 H 0.236 0.764 31 H 0.144 0.856 32 H 0.170 0.830 33 H 0.243 0.757 34 H 0.115 0.885 35 H 0.052 0.948 36 H 0.031 0.969 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.252 0.438 -15.502 15.845 hybrid contribution -0.263 0.221 0.576 0.670 sum -3.515 0.659 -14.926 15.348 Atomic orbital electron populations 1.21787 0.94709 1.01862 1.02287 1.20469 0.96098 0.92427 1.03176 1.19440 1.04135 0.96330 0.91653 1.20948 1.00592 0.94954 0.97498 1.18332 1.02152 0.92061 0.85270 1.84864 1.39353 1.71417 1.35339 1.21299 1.01050 1.00421 0.91636 1.21430 0.99864 0.93310 0.99364 1.17861 0.97915 0.91757 0.85645 1.44230 1.46157 1.37006 1.05324 1.22342 0.79666 0.81500 0.85596 1.90504 1.30210 1.31800 1.86886 1.18913 0.94971 0.97834 0.87257 0.92684 1.21768 0.95394 0.99671 1.02323 1.21063 1.20808 1.22814 0.89629 0.90724 1.24937 0.95309 0.95015 0.98823 1.69846 1.32826 1.30731 1.20060 0.86478 0.80328 0.79598 0.80586 1.20145 1.21322 1.20146 0.92491 0.92497 0.92143 0.90782 0.90836 0.85687 0.76415 0.85568 0.82990 0.75662 0.88528 0.94807 0.96882 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.81 37.16 0.36 -1.07 16 2 C -0.08 -0.94 5.44 -27.88 -0.15 -1.09 16 3 C -0.11 -1.56 5.15 -104.45 -0.54 -2.10 16 4 C -0.12 -1.57 9.61 -39.46 -0.38 -1.95 16 5 C 0.07 0.92 6.70 -39.22 -0.26 0.65 16 6 O -0.50 -5.90 13.50 -19.66 -0.27 -6.17 16 7 C -0.12 -1.87 9.98 -39.46 -0.39 -2.27 16 8 C -0.12 -2.08 8.72 -39.41 -0.34 -2.43 16 9 C 0.16 2.76 6.41 -83.63 -0.54 2.22 16 10 N -0.68 -11.99 4.85 -9.83 -0.05 -12.04 16 11 C 0.52 11.43 6.95 -10.98 -0.08 11.35 16 12 O -0.52 -12.93 12.63 5.55 0.07 -12.86 16 13 C 0.03 0.75 2.64 -92.92 -0.25 0.51 16 14 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 15 C -0.13 -2.95 8.87 37.16 0.33 -2.62 16 16 C -0.50 -13.91 8.37 -34.44 -0.29 -14.20 16 17 H 0.07 2.17 6.75 -52.48 -0.35 1.81 16 18 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 19 N -0.90 -24.50 11.32 55.43 0.63 -23.87 16 20 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 27 H 0.07 0.71 8.05 -51.93 -0.42 0.30 16 28 H 0.07 0.86 7.25 -51.93 -0.38 0.48 16 29 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.38 2.54 9.06 45.56 0.41 2.96 16 31 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 32 H 0.15 3.00 5.79 -52.49 -0.30 2.70 16 33 H 0.41 6.11 6.33 -40.82 -0.26 5.85 16 34 H 0.10 2.36 6.07 -51.93 -0.31 2.04 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.01 0.23 7.70 -51.93 -0.40 -0.17 16 37 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 308.55 15.07 4.65 4.65 Total: -1.00 -30.92 308.55 -6.67 -37.60 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.07 Total: 7.72 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -2.62 Total: -11.45 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.58 Total: -35.91 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.20 Total: -19.03 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.92 -6.67 -37.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597560365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.540 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds