Wall clock time and date at job start Mon Mar 30 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.46764 * 2 1 4 4 C 1.38103 * 120.00832 * 265.02287 * 3 2 1 5 5 C 1.38697 * 120.01498 * 179.97438 * 4 3 2 6 6 O 1.35975 * 119.98494 * 180.02562 * 5 4 3 7 7 C 1.38744 * 120.03042 * 359.97438 * 5 4 3 8 8 C 1.38066 * 120.01529 * 359.76091 * 7 5 4 9 9 C 1.38829 * 120.00654 * 85.00142 * 3 2 1 10 10 N 1.40103 * 120.01571 * 359.97438 * 9 3 2 11 11 C 1.34775 * 120.00047 * 155.44000 * 10 9 3 12 12 O 1.21293 * 119.99940 * 354.47672 * 11 10 9 13 13 C 1.50706 * 120.00019 * 174.47609 * 11 10 9 14 14 H 1.08996 * 109.47273 * 60.00263 * 13 11 10 15 15 C 1.52999 * 109.46979 * 300.00018 * 13 11 10 16 16 C 1.50701 * 109.47038 * 180.02562 * 13 11 10 17 17 H 1.08008 * 119.99841 * 359.97438 * 16 13 11 18 18 C 1.37872 * 120.00057 * 179.97438 * 16 13 11 19 19 N 1.31513 * 120.00238 * 359.97438 * 18 16 13 20 20 Si 1.86797 * 120.00187 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.47089 * 59.99841 * 20 18 16 22 22 H 1.48500 * 109.47509 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47225 * 300.00283 * 20 18 16 24 24 H 1.09002 * 109.47548 * 299.99574 * 1 2 3 25 25 H 1.08996 * 109.47422 * 60.00146 * 1 2 3 26 26 H 1.09007 * 109.46995 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47283 * 240.00031 * 2 1 3 28 28 H 1.09005 * 109.47336 * 119.99573 * 2 1 3 29 29 H 1.08000 * 119.99132 * 359.95124 * 4 3 2 30 30 H 0.96704 * 114.00171 * 89.99310 * 6 5 4 31 31 H 1.08001 * 119.98941 * 180.02562 * 7 5 4 32 32 H 1.08000 * 120.00937 * 180.26913 * 8 7 5 33 33 H 0.97003 * 120.00028 * 335.44908 * 10 9 3 34 34 H 1.09001 * 109.46873 * 180.02562 * 15 13 11 35 35 H 1.09006 * 109.47329 * 300.00212 * 15 13 11 36 36 H 1.08997 * 109.47266 * 59.99913 * 15 13 11 37 37 H 0.96994 * 120.00615 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3602 2.0375 -1.1914 5 6 2.8220 3.3454 -1.1916 6 8 3.1443 3.9521 -2.3650 7 6 2.9542 4.0353 0.0049 8 6 2.6215 3.4219 1.1962 9 6 2.1649 2.1104 1.1976 10 7 1.8313 1.4858 2.4066 11 6 2.3896 1.9065 3.5589 12 8 3.2542 2.7569 3.5388 13 6 1.9396 1.3202 4.8723 14 1 2.1181 0.2449 4.8704 15 6 0.4459 1.5889 5.0656 16 6 2.7137 1.9564 5.9979 17 1 3.4576 2.7097 5.7836 18 6 2.4725 1.5769 7.3012 19 7 1.5665 0.6601 7.5622 20 14 3.4325 2.3650 8.6964 21 1 3.1899 3.8301 8.6986 22 1 2.9891 1.7874 9.9907 23 1 4.8823 2.1037 8.5092 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.2575 1.5011 -2.1231 30 1 2.4076 4.4205 -2.7810 31 1 3.3134 5.0538 0.0039 32 1 2.7203 3.9604 2.1271 33 1 1.1987 0.7505 2.4142 34 1 0.1205 1.1652 6.0157 35 1 0.2673 2.6642 5.0675 36 1 -0.1144 1.1291 4.2515 37 1 1.3970 0.3929 8.4791 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597560365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:44 Heat of formation + Delta-G solvation = -87.750931 kcal Electronic energy + Delta-G solvation = -19724.188406 eV Core-core repulsion = 16658.302517 eV Total energy + Delta-G solvation = -3065.885889 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.73764 -40.08829 -38.06672 -35.87845 -35.19305 -34.68878 -32.57040 -30.67532 -29.23331 -27.23342 -25.12781 -24.85390 -23.43487 -21.97950 -21.06341 -19.03941 -18.83989 -18.20634 -17.66624 -16.85570 -16.48220 -16.37025 -15.70414 -15.36768 -14.96289 -14.76661 -14.61181 -14.50460 -13.95779 -13.68205 -13.54838 -13.11736 -12.98056 -12.75072 -12.72536 -12.61841 -12.32146 -12.23034 -12.03054 -11.84219 -11.49529 -11.16748 -11.09569 -10.60365 -10.34372 -9.77922 -8.83356 -8.17317 -6.27931 0.19444 0.35265 1.41426 1.42221 1.50814 1.77072 2.18400 2.45992 2.70561 3.12796 3.32744 3.77890 3.88027 4.09846 4.23659 4.33214 4.48879 4.53791 4.57746 4.70239 4.79436 4.88900 4.94195 4.99307 5.09651 5.11097 5.24529 5.39036 5.41522 5.46739 5.49451 5.53636 5.71184 5.88469 5.97950 6.16339 6.58205 6.80056 6.91707 7.29204 7.42239 8.88370 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028480 B = 0.004951 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.898447 B = 5654.299669 C = 6417.961882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.099 4.099 4 C -0.118 4.118 5 C 0.082 3.918 6 O -0.505 6.505 7 C -0.136 4.136 8 C -0.140 4.140 9 C 0.132 3.868 10 N -0.664 5.664 11 C 0.520 3.480 12 O -0.557 6.557 13 C 0.028 3.972 14 H 0.047 0.953 15 C -0.121 4.121 16 C -0.531 4.531 17 H 0.050 0.950 18 C 0.023 3.977 19 N -0.909 5.909 20 Si 0.955 3.045 21 H -0.277 1.277 22 H -0.274 1.274 23 H -0.278 1.278 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.158 0.842 30 H 0.408 0.592 31 H 0.136 0.864 32 H 0.119 0.881 33 H 0.419 0.581 34 H 0.075 0.925 35 H 0.023 0.977 36 H 0.051 0.949 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.051 -0.649 -18.124 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.102 4.102 4 C -0.137 4.137 5 C 0.037 3.963 6 O -0.317 6.317 7 C -0.155 4.155 8 C -0.161 4.161 9 C 0.037 3.963 10 N -0.310 5.310 11 C 0.311 3.689 12 O -0.435 6.435 13 C 0.006 3.994 14 H 0.065 0.935 15 C -0.179 4.179 16 C -0.570 4.570 17 H 0.068 0.932 18 C -0.177 4.177 19 N -0.548 5.548 20 Si 0.781 3.219 21 H -0.202 1.202 22 H -0.199 1.199 23 H -0.203 1.203 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.115 0.885 28 H 0.084 0.916 29 H 0.175 0.825 30 H 0.266 0.734 31 H 0.154 0.846 32 H 0.137 0.863 33 H 0.258 0.742 34 H 0.093 0.907 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.003 -0.395 -17.781 18.231 hybrid contribution -0.042 0.505 1.087 1.200 sum -4.045 0.111 -16.694 17.177 Atomic orbital electron populations 1.21777 0.93362 1.03033 1.02199 1.20578 0.97180 0.90520 1.03985 1.19739 1.02418 0.97406 0.90615 1.21290 0.99421 0.94690 0.98312 1.18378 1.00218 0.92306 0.85377 1.84798 1.41019 1.71648 1.34278 1.21396 1.01497 1.01113 0.91527 1.21258 1.01679 0.94082 0.99081 1.18027 1.00270 0.91999 0.85984 1.43775 1.45662 1.36868 1.04666 1.21878 0.79571 0.81127 0.86339 1.90495 1.31977 1.33478 1.87528 1.18830 0.95785 0.96978 0.87764 0.93542 1.21580 0.94488 0.99141 1.02649 1.21216 1.21280 1.23025 0.91452 0.93202 1.25553 0.96108 0.95470 1.00548 1.69921 1.33190 1.31031 1.20613 0.85659 0.78984 0.78743 0.78532 1.20203 1.19884 1.20308 0.93646 0.91554 0.90379 0.88450 0.91594 0.82463 0.73352 0.84639 0.86295 0.74220 0.90659 0.95757 0.93003 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.81 71.98 0.71 -1.65 16 2 C -0.09 -1.64 5.44 29.85 0.16 -1.48 16 3 C -0.10 -2.52 5.15 -19.75 -0.10 -2.62 16 4 C -0.12 -2.68 9.61 22.35 0.21 -2.46 16 5 C 0.08 2.05 6.70 22.50 0.15 2.20 16 6 O -0.50 -10.14 13.50 -93.27 -1.26 -11.40 16 7 C -0.14 -4.01 9.98 22.35 0.22 -3.79 16 8 C -0.14 -5.04 8.72 22.38 0.20 -4.85 16 9 C 0.13 4.40 6.41 38.11 0.24 4.64 16 10 N -0.66 -23.48 4.85 -303.39 -1.47 -24.95 16 11 C 0.52 23.77 6.95 87.66 0.61 24.38 16 12 O -0.56 -29.25 12.63 -3.07 -0.04 -29.29 16 13 C 0.03 1.36 2.64 -12.28 -0.03 1.33 16 14 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 15 C -0.12 -5.37 8.87 71.98 0.64 -4.73 16 16 C -0.53 -30.32 8.37 25.60 0.21 -30.11 16 17 H 0.05 3.04 6.75 -2.91 -0.02 3.02 16 18 C 0.02 1.26 5.30 84.65 0.45 1.71 16 19 N -0.91 -50.07 11.32 21.45 0.24 -49.83 16 20 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H 0.04 0.83 7.45 -2.39 -0.02 0.82 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.10 1.46 8.05 -2.39 -0.02 1.44 16 28 H 0.07 1.39 7.25 -2.38 -0.02 1.37 16 29 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 30 H 0.41 3.84 9.06 -74.05 -0.67 3.17 16 31 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 32 H 0.12 5.06 5.79 -2.91 -0.02 5.04 16 33 H 0.42 12.29 6.33 -92.71 -0.59 11.71 16 34 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 35 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.05 1.85 7.70 -2.39 -0.02 1.83 16 37 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -68.47 308.55 3.02 -65.45 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -0.16 Total: 20.91 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 3.67 Total: -17.44 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -1.23 Total: -74.78 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -1.30 Total: -40.69 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -68.47 3.02 -65.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597560365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.302 kcal (2) G-P(sol) polarization free energy of solvation -68.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds