Wall clock time and date at job start Mon Mar 30 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.47414 * 2 1 4 4 C 1.38112 * 120.01005 * 265.00581 * 3 2 1 5 5 C 1.38694 * 120.01709 * 180.02562 * 4 3 2 6 6 O 1.35971 * 119.98732 * 179.97438 * 5 4 3 7 7 C 1.38747 * 120.02826 * 359.97438 * 5 4 3 8 8 C 1.38059 * 120.01595 * 0.02562 * 7 5 4 9 9 C 1.38821 * 120.00934 * 85.29700 * 3 2 1 10 10 N 1.40120 * 120.01133 * 359.97438 * 9 3 2 11 11 C 1.34777 * 119.99959 * 145.55018 * 10 9 3 12 12 O 1.21296 * 119.99891 * 4.49653 * 11 10 9 13 13 C 1.50699 * 119.99987 * 184.49253 * 11 10 9 14 14 H 1.08995 * 109.47321 * 300.00125 * 13 11 10 15 15 C 1.53002 * 109.46616 * 60.00280 * 13 11 10 16 16 C 1.50701 * 109.46924 * 179.97438 * 13 11 10 17 17 H 1.07995 * 120.00197 * 0.02562 * 16 13 11 18 18 C 1.37875 * 119.99700 * 180.02562 * 16 13 11 19 19 N 1.31518 * 120.00438 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 119.99927 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.46965 * 90.00627 * 20 18 16 22 22 H 1.48501 * 109.47313 * 210.00143 * 20 18 16 23 23 H 1.48500 * 109.47386 * 330.00430 * 20 18 16 24 24 H 1.08995 * 109.46954 * 59.99400 * 1 2 3 25 25 H 1.08995 * 109.47052 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46580 * 300.00161 * 1 2 3 27 27 H 1.09000 * 109.46836 * 240.00300 * 2 1 3 28 28 H 1.08995 * 109.46954 * 120.00600 * 2 1 3 29 29 H 1.08002 * 119.99057 * 0.04057 * 4 3 2 30 30 H 0.96699 * 114.00304 * 270.02649 * 6 5 4 31 31 H 1.08006 * 119.98994 * 179.97438 * 7 5 4 32 32 H 1.07998 * 120.00871 * 179.97438 * 8 7 5 33 33 H 0.96999 * 120.00195 * 325.55101 * 10 9 3 34 34 H 1.08997 * 109.47201 * 60.00401 * 15 13 11 35 35 H 1.09003 * 109.46999 * 179.97438 * 15 13 11 36 36 H 1.09001 * 109.47707 * 299.99682 * 15 13 11 37 37 H 0.96996 * 120.00696 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.3609 2.0373 -1.1914 5 6 2.8238 3.3447 -1.1915 6 8 3.1475 3.9509 -2.3648 7 6 2.9567 4.0343 0.0051 8 6 2.6288 3.4192 1.1968 9 6 2.1710 2.1082 1.1981 10 7 1.8433 1.4814 2.4077 11 6 2.5469 1.7595 3.5230 12 8 3.4099 2.6115 3.4990 13 6 2.2614 1.0119 4.8000 14 1 1.2251 1.1778 5.0942 15 6 2.4956 -0.4837 4.5785 16 6 3.1787 1.5078 5.8881 17 1 3.8962 2.2866 5.6762 18 6 3.1017 0.9670 7.1540 19 7 2.2283 0.0182 7.4120 20 14 4.2391 1.5811 8.5026 21 1 3.5947 2.7127 9.2165 22 1 4.5091 0.4801 9.4619 23 1 5.5177 2.0386 7.9017 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.2570 1.5013 -2.1233 30 1 4.0706 3.8323 -2.6273 31 1 3.3177 5.0523 0.0043 32 1 2.7327 3.9560 2.1281 33 1 1.1100 0.8474 2.4423 34 1 3.5319 -0.6496 4.2843 35 1 2.2896 -1.0245 5.5022 36 1 1.8325 -0.8427 3.7913 37 1 2.1744 -0.3625 8.3025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597560366.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:47 Heat of formation + Delta-G solvation = -68.815817 kcal Electronic energy + Delta-G solvation = -19739.124538 eV Core-core repulsion = 16674.059738 eV Total energy + Delta-G solvation = -3065.064800 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.34579 -38.70617 -36.90786 -34.03091 -33.72220 -33.54328 -30.65721 -29.63944 -27.97437 -25.21472 -23.97331 -23.44394 -21.95920 -20.89117 -19.47466 -17.94181 -17.51406 -16.38505 -15.97739 -15.38150 -15.16988 -14.69446 -14.38301 -14.09075 -13.81130 -13.62271 -13.22973 -12.93997 -12.54624 -12.36314 -12.14642 -11.83517 -11.58643 -11.37473 -11.06435 -10.98877 -10.79710 -10.76842 -10.40671 -10.32595 -10.03123 -9.73514 -9.06315 -8.82546 -8.59746 -8.39468 -7.65125 -6.09584 -4.13394 1.35435 1.49239 3.30350 3.36382 3.40400 3.42599 3.65928 3.90369 4.30155 4.42410 4.80619 4.93070 5.15203 5.24087 5.26890 5.34832 5.51477 5.63434 5.74767 5.87275 5.89847 6.02251 6.16981 6.21434 6.32685 6.51026 6.56563 6.62688 6.72541 6.75866 6.84376 7.21362 7.37224 7.66717 7.71551 7.87356 8.02059 8.27783 8.94590 9.00049 9.52538 10.98024 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028300 B = 0.005002 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.164905 B = 5596.894940 C = 6409.093949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.104 4.104 4 C -0.125 4.125 5 C 0.073 3.927 6 O -0.502 6.502 7 C -0.129 4.129 8 C -0.108 4.108 9 C 0.159 3.841 10 N -0.686 5.686 11 C 0.518 3.482 12 O -0.523 6.523 13 C 0.031 3.969 14 H 0.056 0.944 15 C -0.133 4.133 16 C -0.504 4.504 17 H 0.075 0.925 18 C 0.060 3.940 19 N -0.895 5.895 20 Si 0.901 3.099 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.273 1.273 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.126 0.874 30 H 0.383 0.617 31 H 0.126 0.874 32 H 0.146 0.854 33 H 0.407 0.593 34 H 0.032 0.968 35 H 0.096 0.904 36 H 0.012 0.988 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.343 0.103 -15.547 15.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 C -0.107 4.107 4 C -0.144 4.144 5 C 0.028 3.972 6 O -0.311 6.311 7 C -0.148 4.148 8 C -0.129 4.129 9 C 0.063 3.937 10 N -0.332 5.332 11 C 0.310 3.690 12 O -0.397 6.397 13 C 0.010 3.990 14 H 0.073 0.927 15 C -0.191 4.191 16 C -0.542 4.542 17 H 0.093 0.907 18 C -0.141 4.141 19 N -0.535 5.535 20 Si 0.729 3.271 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.144 0.856 30 H 0.238 0.762 31 H 0.144 0.856 32 H 0.164 0.836 33 H 0.243 0.757 34 H 0.051 0.949 35 H 0.114 0.886 36 H 0.031 0.969 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.352 0.741 -15.290 15.487 hybrid contribution 0.731 -0.157 0.673 1.006 sum -1.621 0.584 -14.617 14.718 Atomic orbital electron populations 1.21774 0.94734 1.01856 1.02212 1.20485 0.96100 0.92381 1.03277 1.19560 1.03256 0.96231 0.91638 1.20983 1.01953 0.94022 0.97422 1.18341 1.02526 0.91389 0.84968 1.84842 1.32828 1.75853 1.37557 1.21283 1.01706 1.00496 0.91347 1.21286 0.99540 0.93126 0.98906 1.17815 0.98660 0.91497 0.85685 1.44181 1.35995 1.45711 1.07288 1.22320 0.79275 0.82472 0.84978 1.90527 1.32290 1.32445 1.84475 1.18911 0.99765 0.92573 0.87738 0.92653 1.21766 0.98315 0.97468 1.01601 1.21106 1.19214 1.20839 0.93032 0.90692 1.24942 0.95713 0.94903 0.98571 1.69858 1.35519 1.26569 1.21519 0.86430 0.81189 0.78291 0.81189 1.20610 1.21247 1.19729 0.92477 0.92117 0.92615 0.90874 0.90564 0.85645 0.76214 0.85567 0.83615 0.75708 0.94852 0.88581 0.96877 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.83 37.16 0.37 -1.12 16 2 C -0.09 -0.97 5.46 -27.88 -0.15 -1.12 16 3 C -0.10 -1.45 5.15 -104.45 -0.54 -1.99 16 4 C -0.12 -1.62 9.61 -39.46 -0.38 -2.00 16 5 C 0.07 0.99 6.70 -39.22 -0.26 0.72 16 6 O -0.50 -5.85 13.50 -19.65 -0.27 -6.12 16 7 C -0.13 -1.91 9.98 -39.46 -0.39 -2.30 16 8 C -0.11 -1.86 8.70 -39.41 -0.34 -2.20 16 9 C 0.16 2.65 6.29 -83.62 -0.53 2.13 16 10 N -0.69 -12.03 4.64 -9.83 -0.05 -12.07 16 11 C 0.52 11.44 6.99 -10.99 -0.08 11.36 16 12 O -0.52 -13.00 12.88 5.54 0.07 -12.93 16 13 C 0.03 0.75 2.64 -92.92 -0.25 0.50 16 14 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 15 C -0.13 -2.96 8.87 37.16 0.33 -2.63 16 16 C -0.50 -13.89 8.37 -34.44 -0.29 -14.18 16 17 H 0.07 2.18 6.75 -52.49 -0.35 1.83 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 19 N -0.90 -24.53 11.32 55.43 0.63 -23.91 16 20 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.58 7.32 -51.93 -0.38 0.20 16 27 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 28 H 0.08 0.93 7.41 -51.93 -0.38 0.55 16 29 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 30 H 0.38 2.65 9.06 45.56 0.41 3.07 16 31 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16 32 H 0.15 2.80 6.20 -52.49 -0.33 2.47 16 33 H 0.41 6.13 6.61 -40.82 -0.27 5.86 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 2.35 6.07 -51.93 -0.32 2.04 16 36 H 0.01 0.23 7.67 -51.93 -0.40 -0.17 16 37 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 309.23 15.07 4.66 4.66 Total: -1.00 -30.89 309.23 -6.68 -37.57 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.10 Total: 7.68 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -2.60 Total: -11.30 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.58 Total: -35.98 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.19 Total: -19.04 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.89 -6.68 -37.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597560366.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.242 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds