Wall clock time and date at job start Mon Mar 30 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.47414 * 2 1 4 4 C 1.38112 * 120.01005 * 265.00581 * 3 2 1 5 5 C 1.38694 * 120.01709 * 180.02562 * 4 3 2 6 6 O 1.35971 * 119.98732 * 179.97438 * 5 4 3 7 7 C 1.38747 * 120.02826 * 359.97438 * 5 4 3 8 8 C 1.38059 * 120.01595 * 0.02562 * 7 5 4 9 9 C 1.38821 * 120.00934 * 85.29700 * 3 2 1 10 10 N 1.40120 * 120.01133 * 359.97438 * 9 3 2 11 11 C 1.34777 * 119.99959 * 145.55018 * 10 9 3 12 12 O 1.21296 * 119.99891 * 4.49653 * 11 10 9 13 13 C 1.50699 * 119.99987 * 184.49253 * 11 10 9 14 14 H 1.08995 * 109.47321 * 300.00125 * 13 11 10 15 15 C 1.53002 * 109.46616 * 60.00280 * 13 11 10 16 16 C 1.50701 * 109.46924 * 179.97438 * 13 11 10 17 17 H 1.07995 * 120.00197 * 0.02562 * 16 13 11 18 18 C 1.37875 * 119.99700 * 180.02562 * 16 13 11 19 19 N 1.31518 * 120.00438 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 119.99927 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.46965 * 90.00627 * 20 18 16 22 22 H 1.48501 * 109.47313 * 210.00143 * 20 18 16 23 23 H 1.48500 * 109.47386 * 330.00430 * 20 18 16 24 24 H 1.08995 * 109.46954 * 59.99400 * 1 2 3 25 25 H 1.08995 * 109.47052 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46580 * 300.00161 * 1 2 3 27 27 H 1.09000 * 109.46836 * 240.00300 * 2 1 3 28 28 H 1.08995 * 109.46954 * 120.00600 * 2 1 3 29 29 H 1.08002 * 119.99057 * 0.04057 * 4 3 2 30 30 H 0.96699 * 114.00304 * 270.02649 * 6 5 4 31 31 H 1.08006 * 119.98994 * 179.97438 * 7 5 4 32 32 H 1.07998 * 120.00871 * 179.97438 * 8 7 5 33 33 H 0.96999 * 120.00195 * 325.55101 * 10 9 3 34 34 H 1.08997 * 109.47201 * 60.00401 * 15 13 11 35 35 H 1.09003 * 109.46999 * 179.97438 * 15 13 11 36 36 H 1.09001 * 109.47707 * 299.99682 * 15 13 11 37 37 H 0.96996 * 120.00696 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.3609 2.0373 -1.1914 5 6 2.8238 3.3447 -1.1915 6 8 3.1475 3.9509 -2.3648 7 6 2.9567 4.0343 0.0051 8 6 2.6288 3.4192 1.1968 9 6 2.1710 2.1082 1.1981 10 7 1.8433 1.4814 2.4077 11 6 2.5469 1.7595 3.5230 12 8 3.4099 2.6115 3.4990 13 6 2.2614 1.0119 4.8000 14 1 1.2251 1.1778 5.0942 15 6 2.4956 -0.4837 4.5785 16 6 3.1787 1.5078 5.8881 17 1 3.8962 2.2866 5.6762 18 6 3.1017 0.9670 7.1540 19 7 2.2283 0.0182 7.4120 20 14 4.2391 1.5811 8.5026 21 1 3.5947 2.7127 9.2165 22 1 4.5091 0.4801 9.4619 23 1 5.5177 2.0386 7.9017 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.2570 1.5013 -2.1233 30 1 4.0706 3.8323 -2.6273 31 1 3.3177 5.0523 0.0043 32 1 2.7327 3.9560 2.1281 33 1 1.1100 0.8474 2.4423 34 1 3.5319 -0.6496 4.2843 35 1 2.2896 -1.0245 5.5022 36 1 1.8325 -0.8427 3.7913 37 1 2.1744 -0.3625 8.3025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597560366.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:47 Heat of formation + Delta-G solvation = -89.302992 kcal Electronic energy + Delta-G solvation = -19740.012929 eV Core-core repulsion = 16674.059738 eV Total energy + Delta-G solvation = -3065.953191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.68923 -40.07948 -38.06018 -35.86212 -35.16326 -34.69462 -32.55975 -30.68553 -29.22569 -27.22523 -25.11917 -24.84116 -23.39189 -21.96806 -21.09362 -19.04600 -18.84149 -18.21343 -17.65532 -16.75335 -16.49959 -16.22785 -15.90400 -15.31092 -15.02884 -14.77943 -14.59091 -14.48174 -14.08438 -13.53413 -13.44218 -13.15401 -12.98834 -12.84363 -12.67207 -12.60239 -12.28205 -12.24001 -12.03952 -11.83306 -11.45301 -11.13236 -11.04406 -10.61653 -10.34319 -9.78583 -8.91193 -8.17141 -6.27587 0.19016 0.35027 1.40329 1.41474 1.52821 1.78030 2.19811 2.46272 2.68645 3.13055 3.31903 3.79363 3.88831 4.12322 4.23180 4.33163 4.48292 4.55240 4.58450 4.71392 4.78132 4.90797 4.95033 4.98920 5.08805 5.10870 5.23939 5.38969 5.43486 5.45766 5.49630 5.55132 5.71901 5.89083 5.97732 6.16994 6.59061 6.80834 6.89034 7.31634 7.43279 8.88752 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028300 B = 0.005002 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.164905 B = 5596.894940 C = 6409.093949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.092 4.092 4 C -0.122 4.122 5 C 0.087 3.913 6 O -0.504 6.504 7 C -0.139 4.139 8 C -0.129 4.129 9 C 0.127 3.873 10 N -0.667 5.667 11 C 0.521 3.479 12 O -0.561 6.561 13 C 0.027 3.973 14 H 0.046 0.954 15 C -0.120 4.120 16 C -0.530 4.530 17 H 0.049 0.951 18 C 0.022 3.978 19 N -0.909 5.909 20 Si 0.955 3.045 21 H -0.275 1.275 22 H -0.274 1.274 23 H -0.279 1.279 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.158 0.842 30 H 0.408 0.592 31 H 0.137 0.863 32 H 0.115 0.885 33 H 0.418 0.582 34 H 0.023 0.977 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 -0.876 -17.721 17.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.095 4.095 4 C -0.141 4.141 5 C 0.042 3.958 6 O -0.317 6.317 7 C -0.159 4.159 8 C -0.149 4.149 9 C 0.032 3.968 10 N -0.313 5.313 11 C 0.312 3.688 12 O -0.438 6.438 13 C 0.006 3.994 14 H 0.064 0.936 15 C -0.178 4.178 16 C -0.568 4.568 17 H 0.068 0.932 18 C -0.177 4.177 19 N -0.548 5.548 20 Si 0.781 3.219 21 H -0.201 1.201 22 H -0.199 1.199 23 H -0.204 1.204 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.175 0.825 30 H 0.266 0.734 31 H 0.155 0.845 32 H 0.133 0.867 33 H 0.257 0.743 34 H 0.042 0.958 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.718 -0.258 -17.508 17.719 hybrid contribution 0.830 0.198 1.186 1.461 sum -1.888 -0.060 -16.322 16.431 Atomic orbital electron populations 1.21771 0.93531 1.03017 1.02058 1.20582 0.97051 0.90590 1.04048 1.19833 1.01668 0.97307 0.90681 1.21315 1.00744 0.93836 0.98191 1.18388 1.01012 0.91383 0.84993 1.84781 1.34985 1.75678 1.36230 1.21391 1.02034 1.01220 0.91206 1.21146 1.01229 0.93849 0.98700 1.17991 1.01027 0.91794 0.85967 1.43730 1.35441 1.45445 1.06718 1.21855 0.79354 0.81944 0.85667 1.90513 1.34169 1.33895 1.85198 1.18830 0.98318 0.94009 0.88256 0.93629 1.21575 0.98644 0.95797 1.01803 1.21247 1.19822 1.20911 0.94854 0.93226 1.25560 0.96951 0.95054 1.00168 1.69933 1.36045 1.26778 1.22057 0.85601 0.79181 0.78209 0.78921 1.20064 1.19920 1.20446 0.91812 0.90326 0.93640 0.88458 0.91465 0.82490 0.73359 0.84530 0.86742 0.74316 0.95771 0.90766 0.92853 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.83 71.98 0.71 -1.77 16 2 C -0.09 -1.68 5.46 29.85 0.16 -1.52 16 3 C -0.09 -2.36 5.15 -19.76 -0.10 -2.47 16 4 C -0.12 -2.76 9.61 22.35 0.21 -2.55 16 5 C 0.09 2.15 6.70 22.50 0.15 2.30 16 6 O -0.50 -10.02 13.50 -93.22 -1.26 -11.28 16 7 C -0.14 -4.04 9.98 22.35 0.22 -3.82 16 8 C -0.13 -4.55 8.70 22.38 0.19 -4.36 16 9 C 0.13 4.19 6.29 38.11 0.24 4.43 16 10 N -0.67 -23.53 4.64 -303.39 -1.41 -24.94 16 11 C 0.52 23.75 6.99 87.66 0.61 24.36 16 12 O -0.56 -29.29 12.88 -3.08 -0.04 -29.33 16 13 C 0.03 1.33 2.64 -12.29 -0.03 1.30 16 14 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 15 C -0.12 -5.33 8.87 71.98 0.64 -4.69 16 16 C -0.53 -30.23 8.37 25.60 0.21 -30.01 16 17 H 0.05 3.03 6.75 -2.91 -0.02 3.01 16 18 C 0.02 1.22 5.30 84.65 0.45 1.67 16 19 N -0.91 -50.12 11.32 21.45 0.24 -49.87 16 20 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 26 H 0.04 0.86 7.32 -2.39 -0.02 0.84 16 27 H 0.10 1.48 8.05 -2.39 -0.02 1.46 16 28 H 0.07 1.47 7.41 -2.39 -0.02 1.45 16 29 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 30 H 0.41 4.12 9.06 -74.06 -0.67 3.44 16 31 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 32 H 0.11 4.73 6.20 -2.91 -0.02 4.71 16 33 H 0.42 12.34 6.61 -92.71 -0.61 11.73 16 34 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 36 H 0.05 1.87 7.67 -2.39 -0.02 1.85 16 37 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -68.16 309.23 3.05 -65.10 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -0.18 Total: 20.94 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 3.67 Total: -17.11 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -1.17 Total: -74.81 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -1.30 Total: -40.61 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -68.16 3.05 -65.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597560366.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.200 kcal (2) G-P(sol) polarization free energy of solvation -68.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds